Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46780

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0090627: plant epidermal cell differentiation0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
5GO:0090042: tubulin deacetylation0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:2000505: regulation of energy homeostasis0.00E+00
8GO:1901918: negative regulation of exoribonuclease activity0.00E+00
9GO:0033494: ferulate metabolic process0.00E+00
10GO:0015979: photosynthesis1.30E-14
11GO:0009773: photosynthetic electron transport in photosystem I2.91E-12
12GO:0042549: photosystem II stabilization3.87E-06
13GO:0010207: photosystem II assembly4.56E-06
14GO:0009768: photosynthesis, light harvesting in photosystem I1.19E-05
15GO:0010206: photosystem II repair3.10E-05
16GO:0009735: response to cytokinin3.49E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.35E-05
18GO:0006546: glycine catabolic process9.42E-05
19GO:0010037: response to carbon dioxide9.42E-05
20GO:0015976: carbon utilization9.42E-05
21GO:0045727: positive regulation of translation9.42E-05
22GO:0015994: chlorophyll metabolic process9.42E-05
23GO:2000122: negative regulation of stomatal complex development9.42E-05
24GO:0006094: gluconeogenesis1.02E-04
25GO:0006810: transport1.13E-04
26GO:0018298: protein-chromophore linkage1.97E-04
27GO:0010218: response to far red light2.32E-04
28GO:0009637: response to blue light2.93E-04
29GO:0010196: nonphotochemical quenching3.65E-04
30GO:0009772: photosynthetic electron transport in photosystem II3.65E-04
31GO:0071370: cellular response to gibberellin stimulus3.97E-04
32GO:0010480: microsporocyte differentiation3.97E-04
33GO:0000481: maturation of 5S rRNA3.97E-04
34GO:0071461: cellular response to redox state3.97E-04
35GO:0010028: xanthophyll cycle3.97E-04
36GO:0034337: RNA folding3.97E-04
37GO:0071588: hydrogen peroxide mediated signaling pathway3.97E-04
38GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.97E-04
39GO:0010114: response to red light4.41E-04
40GO:0009657: plastid organization5.59E-04
41GO:0032544: plastid translation5.59E-04
42GO:0071482: cellular response to light stimulus5.59E-04
43GO:0010205: photoinhibition7.90E-04
44GO:0080005: photosystem stoichiometry adjustment8.60E-04
45GO:1900871: chloroplast mRNA modification8.60E-04
46GO:0010541: acropetal auxin transport8.60E-04
47GO:0090342: regulation of cell aging8.60E-04
48GO:0016122: xanthophyll metabolic process8.60E-04
49GO:0030388: fructose 1,6-bisphosphate metabolic process8.60E-04
50GO:0009409: response to cold9.37E-04
51GO:0015995: chlorophyll biosynthetic process1.28E-03
52GO:0009718: anthocyanin-containing compound biosynthetic process1.37E-03
53GO:0000280: nuclear division1.40E-03
54GO:0006518: peptide metabolic process1.40E-03
55GO:0006013: mannose metabolic process1.40E-03
56GO:0010160: formation of animal organ boundary1.40E-03
57GO:0045493: xylan catabolic process1.40E-03
58GO:2001295: malonyl-CoA biosynthetic process1.40E-03
59GO:0006000: fructose metabolic process1.40E-03
60GO:0009817: defense response to fungus, incompatible interaction1.46E-03
61GO:0010143: cutin biosynthetic process1.54E-03
62GO:0005985: sucrose metabolic process1.73E-03
63GO:0006833: water transport1.93E-03
64GO:0009226: nucleotide-sugar biosynthetic process2.02E-03
65GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.02E-03
66GO:1901332: negative regulation of lateral root development2.02E-03
67GO:2001141: regulation of RNA biosynthetic process2.02E-03
68GO:0046836: glycolipid transport2.02E-03
69GO:0051513: regulation of monopolar cell growth2.02E-03
70GO:0071484: cellular response to light intensity2.02E-03
71GO:0009152: purine ribonucleotide biosynthetic process2.02E-03
72GO:0046653: tetrahydrofolate metabolic process2.02E-03
73GO:0080170: hydrogen peroxide transmembrane transport2.02E-03
74GO:0043481: anthocyanin accumulation in tissues in response to UV light2.02E-03
75GO:0034599: cellular response to oxidative stress2.09E-03
76GO:0045454: cell redox homeostasis2.50E-03
77GO:0061077: chaperone-mediated protein folding2.60E-03
78GO:0051205: protein insertion into membrane2.71E-03
79GO:0010021: amylopectin biosynthetic process2.71E-03
80GO:0010023: proanthocyanidin biosynthetic process2.71E-03
81GO:0019464: glycine decarboxylation via glycine cleavage system2.71E-03
82GO:0009765: photosynthesis, light harvesting2.71E-03
83GO:0045038: protein import into chloroplast thylakoid membrane3.47E-03
84GO:0006461: protein complex assembly3.47E-03
85GO:0034220: ion transmembrane transport3.95E-03
86GO:0042631: cellular response to water deprivation3.95E-03
87GO:0042742: defense response to bacterium4.00E-03
88GO:0060918: auxin transport4.29E-03
89GO:1902456: regulation of stomatal opening4.29E-03
90GO:0010256: endomembrane system organization4.29E-03
91GO:0009913: epidermal cell differentiation4.29E-03
92GO:0008152: metabolic process4.30E-03
93GO:0015986: ATP synthesis coupled proton transport4.58E-03
94GO:0019252: starch biosynthetic process4.91E-03
95GO:0010019: chloroplast-nucleus signaling pathway5.17E-03
96GO:0000302: response to reactive oxygen species5.26E-03
97GO:0048437: floral organ development6.11E-03
98GO:0009645: response to low light intensity stimulus6.11E-03
99GO:0009769: photosynthesis, light harvesting in photosystem II6.11E-03
100GO:0009787: regulation of abscisic acid-activated signaling pathway7.10E-03
101GO:0009819: drought recovery7.10E-03
102GO:0032508: DNA duplex unwinding7.10E-03
103GO:0010492: maintenance of shoot apical meristem identity7.10E-03
104GO:0005978: glycogen biosynthetic process7.10E-03
105GO:0010027: thylakoid membrane organization7.61E-03
106GO:0055114: oxidation-reduction process7.63E-03
107GO:0006002: fructose 6-phosphate metabolic process8.15E-03
108GO:0048507: meristem development9.25E-03
109GO:0006754: ATP biosynthetic process9.25E-03
110GO:0009051: pentose-phosphate shunt, oxidative branch9.25E-03
111GO:0006098: pentose-phosphate shunt9.25E-03
112GO:0090305: nucleic acid phosphodiester bond hydrolysis9.25E-03
113GO:0042744: hydrogen peroxide catabolic process9.87E-03
114GO:0010119: regulation of stomatal movement1.15E-02
115GO:0006949: syncytium formation1.16E-02
116GO:0032259: methylation1.26E-02
117GO:0009089: lysine biosynthetic process via diaminopimelate1.29E-02
118GO:0006352: DNA-templated transcription, initiation1.29E-02
119GO:0000272: polysaccharide catabolic process1.29E-02
120GO:0018119: peptidyl-cysteine S-nitrosylation1.29E-02
121GO:0048229: gametophyte development1.29E-02
122GO:0010015: root morphogenesis1.29E-02
123GO:0009698: phenylpropanoid metabolic process1.29E-02
124GO:0019684: photosynthesis, light reaction1.29E-02
125GO:0005983: starch catabolic process1.42E-02
126GO:0016024: CDP-diacylglycerol biosynthetic process1.42E-02
127GO:0008361: regulation of cell size1.42E-02
128GO:0006006: glucose metabolic process1.55E-02
129GO:0018107: peptidyl-threonine phosphorylation1.55E-02
130GO:0010075: regulation of meristem growth1.55E-02
131GO:0009767: photosynthetic electron transport chain1.55E-02
132GO:0005986: sucrose biosynthetic process1.55E-02
133GO:0019253: reductive pentose-phosphate cycle1.69E-02
134GO:0010540: basipetal auxin transport1.69E-02
135GO:0009934: regulation of meristem structural organization1.69E-02
136GO:0009644: response to high light intensity1.77E-02
137GO:0010030: positive regulation of seed germination1.83E-02
138GO:0006636: unsaturated fatty acid biosynthetic process1.98E-02
139GO:0009737: response to abscisic acid2.01E-02
140GO:0009664: plant-type cell wall organization2.06E-02
141GO:0009658: chloroplast organization2.20E-02
142GO:0006364: rRNA processing2.21E-02
143GO:0007017: microtubule-based process2.29E-02
144GO:0016575: histone deacetylation2.29E-02
145GO:0048511: rhythmic process2.44E-02
146GO:0009269: response to desiccation2.44E-02
147GO:0035428: hexose transmembrane transport2.61E-02
148GO:0019748: secondary metabolic process2.61E-02
149GO:0006096: glycolytic process2.61E-02
150GO:0006012: galactose metabolic process2.77E-02
151GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.77E-02
152GO:0048443: stamen development2.94E-02
153GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.12E-02
154GO:0080022: primary root development3.29E-02
155GO:0000413: protein peptidyl-prolyl isomerization3.29E-02
156GO:0048653: anther development3.29E-02
157GO:0006662: glycerol ether metabolic process3.48E-02
158GO:0046323: glucose import3.48E-02
159GO:0009958: positive gravitropism3.48E-02
160GO:0042752: regulation of circadian rhythm3.66E-02
161GO:0045893: positive regulation of transcription, DNA-templated3.84E-02
162GO:0048825: cotyledon development3.85E-02
163GO:0002229: defense response to oomycetes4.04E-02
164GO:0010193: response to ozone4.04E-02
165GO:1901657: glycosyl compound metabolic process4.43E-02
166GO:0030163: protein catabolic process4.43E-02
167GO:0009639: response to red or far red light4.63E-02
168GO:0009828: plant-type cell wall loosening4.63E-02
169GO:0006633: fatty acid biosynthetic process4.92E-02
RankGO TermAdjusted P value
1GO:0051721: protein phosphatase 2A binding0.00E+00
2GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
3GO:0042903: tubulin deacetylase activity0.00E+00
4GO:0043014: alpha-tubulin binding0.00E+00
5GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
6GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
7GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
8GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
9GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
10GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
11GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
12GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
13GO:0046422: violaxanthin de-epoxidase activity0.00E+00
14GO:0005528: FK506 binding4.60E-09
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.31E-07
16GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.04E-06
17GO:0031409: pigment binding7.60E-06
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.42E-05
19GO:0016168: chlorophyll binding1.36E-04
20GO:0004130: cytochrome-c peroxidase activity2.10E-04
21GO:0004332: fructose-bisphosphate aldolase activity2.10E-04
22GO:0004017: adenylate kinase activity2.83E-04
23GO:0004856: xylulokinase activity3.97E-04
24GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.97E-04
25GO:0045485: omega-6 fatty acid desaturase activity3.97E-04
26GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.60E-04
27GO:0008967: phosphoglycolate phosphatase activity8.60E-04
28GO:0047746: chlorophyllase activity8.60E-04
29GO:0016868: intramolecular transferase activity, phosphotransferases8.60E-04
30GO:0010297: heteropolysaccharide binding8.60E-04
31GO:0004047: aminomethyltransferase activity8.60E-04
32GO:0033201: alpha-1,4-glucan synthase activity8.60E-04
33GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.60E-04
34GO:0004089: carbonate dehydratase activity1.37E-03
35GO:0004075: biotin carboxylase activity1.40E-03
36GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.40E-03
37GO:0008864: formyltetrahydrofolate deformylase activity1.40E-03
38GO:0004324: ferredoxin-NADP+ reductase activity1.40E-03
39GO:0004373: glycogen (starch) synthase activity1.40E-03
40GO:0050734: hydroxycinnamoyltransferase activity1.40E-03
41GO:0008266: poly(U) RNA binding1.54E-03
42GO:0048487: beta-tubulin binding2.02E-03
43GO:0016851: magnesium chelatase activity2.02E-03
44GO:0017089: glycolipid transporter activity2.02E-03
45GO:0004375: glycine dehydrogenase (decarboxylating) activity2.02E-03
46GO:0019201: nucleotide kinase activity2.02E-03
47GO:0009011: starch synthase activity2.71E-03
48GO:0009044: xylan 1,4-beta-xylosidase activity2.71E-03
49GO:0008878: glucose-1-phosphate adenylyltransferase activity2.71E-03
50GO:0046556: alpha-L-arabinofuranosidase activity2.71E-03
51GO:0004659: prenyltransferase activity2.71E-03
52GO:0001053: plastid sigma factor activity2.71E-03
53GO:0004345: glucose-6-phosphate dehydrogenase activity2.71E-03
54GO:0051861: glycolipid binding2.71E-03
55GO:0016987: sigma factor activity2.71E-03
56GO:1990137: plant seed peroxidase activity2.71E-03
57GO:0004185: serine-type carboxypeptidase activity2.73E-03
58GO:0005509: calcium ion binding3.36E-03
59GO:0003727: single-stranded RNA binding3.37E-03
60GO:0003959: NADPH dehydrogenase activity3.47E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor3.47E-03
62GO:0003989: acetyl-CoA carboxylase activity3.47E-03
63GO:0004556: alpha-amylase activity4.29E-03
64GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.29E-03
65GO:0016688: L-ascorbate peroxidase activity4.29E-03
66GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.29E-03
67GO:0050662: coenzyme binding4.58E-03
68GO:0004602: glutathione peroxidase activity5.17E-03
69GO:0004559: alpha-mannosidase activity5.17E-03
70GO:0051920: peroxiredoxin activity5.17E-03
71GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.17E-03
72GO:0048038: quinone binding5.26E-03
73GO:0004564: beta-fructofuranosidase activity7.10E-03
74GO:0016209: antioxidant activity7.10E-03
75GO:0004034: aldose 1-epimerase activity7.10E-03
76GO:0015250: water channel activity7.61E-03
77GO:0016787: hydrolase activity8.03E-03
78GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.15E-03
79GO:0015078: hydrogen ion transmembrane transporter activity8.15E-03
80GO:0019843: rRNA binding8.36E-03
81GO:0004575: sucrose alpha-glucosidase activity1.04E-02
82GO:0030234: enzyme regulator activity1.16E-02
83GO:0015386: potassium:proton antiporter activity1.29E-02
84GO:0044183: protein binding involved in protein folding1.29E-02
85GO:0047372: acylglycerol lipase activity1.29E-02
86GO:0008378: galactosyltransferase activity1.42E-02
87GO:0004565: beta-galactosidase activity1.55E-02
88GO:0010329: auxin efflux transmembrane transporter activity1.55E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.55E-02
90GO:0031072: heat shock protein binding1.55E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding1.77E-02
92GO:0043621: protein self-association1.77E-02
93GO:0008168: methyltransferase activity2.09E-02
94GO:0004407: histone deacetylase activity2.13E-02
95GO:0004601: peroxidase activity2.20E-02
96GO:0015079: potassium ion transmembrane transporter activity2.29E-02
97GO:0004707: MAP kinase activity2.44E-02
98GO:0004176: ATP-dependent peptidase activity2.44E-02
99GO:0033612: receptor serine/threonine kinase binding2.44E-02
100GO:0030570: pectate lyase activity2.77E-02
101GO:0003756: protein disulfide isomerase activity2.94E-02
102GO:0047134: protein-disulfide reductase activity3.12E-02
103GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.48E-02
104GO:0005355: glucose transmembrane transporter activity3.66E-02
105GO:0004791: thioredoxin-disulfide reductase activity3.66E-02
106GO:0016853: isomerase activity3.66E-02
107GO:0004518: nuclease activity4.23E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.43E-02
109GO:0046872: metal ion binding4.46E-02
110GO:0016791: phosphatase activity4.63E-02
111GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.69E-02
112GO:0005200: structural constituent of cytoskeleton4.83E-02
113GO:0008483: transaminase activity4.83E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0009507: chloroplast1.01E-57
3GO:0009534: chloroplast thylakoid3.76E-53
4GO:0009535: chloroplast thylakoid membrane5.67E-47
5GO:0009941: chloroplast envelope5.81E-31
6GO:0009570: chloroplast stroma4.05E-28
7GO:0009543: chloroplast thylakoid lumen2.46E-23
8GO:0009579: thylakoid2.52E-23
9GO:0030095: chloroplast photosystem II1.20E-15
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.11E-11
11GO:0031977: thylakoid lumen1.90E-10
12GO:0010287: plastoglobule6.32E-10
13GO:0009523: photosystem II8.16E-08
14GO:0009654: photosystem II oxygen evolving complex3.31E-07
15GO:0019898: extrinsic component of membrane2.59E-06
16GO:0009533: chloroplast stromal thylakoid1.06E-05
17GO:0048046: apoplast2.72E-05
18GO:0009522: photosystem I4.72E-05
19GO:0010319: stromule9.94E-05
20GO:0009783: photosystem II antenna complex3.97E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]3.97E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex8.60E-04
23GO:0009706: chloroplast inner membrane1.19E-03
24GO:0016020: membrane1.31E-03
25GO:0010007: magnesium chelatase complex1.40E-03
26GO:0030076: light-harvesting complex1.73E-03
27GO:0031969: chloroplast membrane1.82E-03
28GO:0005960: glycine cleavage complex2.02E-03
29GO:0009531: secondary cell wall2.02E-03
30GO:0005775: vacuolar lumen2.02E-03
31GO:0042651: thylakoid membrane2.36E-03
32GO:0009517: PSII associated light-harvesting complex II2.71E-03
33GO:0009544: chloroplast ATP synthase complex2.71E-03
34GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)4.29E-03
35GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.29E-03
36GO:0009505: plant-type cell wall6.53E-03
37GO:0009501: amyloplast7.10E-03
38GO:0009538: photosystem I reaction center7.10E-03
39GO:0005811: lipid particle8.15E-03
40GO:0045298: tubulin complex9.25E-03
41GO:0032040: small-subunit processome1.42E-02
42GO:0016021: integral component of membrane1.71E-02
43GO:0005773: vacuole2.89E-02
44GO:0005618: cell wall3.22E-02
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Gene type



Gene DE type