co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0008064: regulation of actin polymerization or depolymerization	0.00E+00
2	GO:0051493: regulation of cytoskeleton organization	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
9	GO:0006633: fatty acid biosynthetic process	5.94E-05
10	GO:0048564: photosystem I assembly	1.56E-04
11	GO:2000021: regulation of ion homeostasis	1.93E-04
12	GO:0043007: maintenance of rDNA	1.93E-04
13	GO:0000476: maturation of 4.5S rRNA	1.93E-04
14	GO:0000967: rRNA 5'-end processing	1.93E-04
15	GO:0043266: regulation of potassium ion transport	1.93E-04
16	GO:0010442: guard cell morphogenesis	1.93E-04
17	GO:0032544: plastid translation	1.95E-04
18	GO:1900865: chloroplast RNA modification	2.82E-04
19	GO:0015995: chlorophyll biosynthetic process	3.43E-04
20	GO:0010424: DNA methylation on cytosine within a CG sequence	4.33E-04
21	GO:0034470: ncRNA processing	4.33E-04
22	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.33E-04
23	GO:0052541: plant-type cell wall cellulose metabolic process	4.33E-04
24	GO:0010069: zygote asymmetric cytokinesis in embryo sac	4.33E-04
25	GO:0019388: galactose catabolic process	4.33E-04
26	GO:0045717: negative regulation of fatty acid biosynthetic process	4.33E-04
27	GO:2001295: malonyl-CoA biosynthetic process	7.06E-04
28	GO:1902448: positive regulation of shade avoidance	7.06E-04
29	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.06E-04
30	GO:0034059: response to anoxia	1.01E-03
31	GO:0016556: mRNA modification	1.01E-03
32	GO:0006424: glutamyl-tRNA aminoacylation	1.01E-03
33	GO:0009590: detection of gravity	1.01E-03
34	GO:0055070: copper ion homeostasis	1.01E-03
35	GO:0042254: ribosome biogenesis	1.11E-03
36	GO:0006546: glycine catabolic process	1.34E-03
37	GO:0000413: protein peptidyl-prolyl isomerization	1.40E-03
38	GO:0035434: copper ion transmembrane transport	1.70E-03
39	GO:0016123: xanthophyll biosynthetic process	1.70E-03
40	GO:0000304: response to singlet oxygen	1.70E-03
41	GO:0032543: mitochondrial translation	1.70E-03
42	GO:0045038: protein import into chloroplast thylakoid membrane	1.70E-03
43	GO:0010405: arabinogalactan protein metabolic process	2.10E-03
44	GO:0006751: glutathione catabolic process	2.10E-03
45	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.10E-03
46	GO:0016554: cytidine to uridine editing	2.10E-03
47	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.10E-03
48	GO:0006796: phosphate-containing compound metabolic process	2.10E-03
49	GO:0010190: cytochrome b6f complex assembly	2.10E-03
50	GO:2000033: regulation of seed dormancy process	2.52E-03
51	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.96E-03
52	GO:0010444: guard mother cell differentiation	2.96E-03
53	GO:0045292: mRNA cis splicing, via spliceosome	3.43E-03
54	GO:0010928: regulation of auxin mediated signaling pathway	3.43E-03
55	GO:0005978: glycogen biosynthetic process	3.43E-03
56	GO:0006526: arginine biosynthetic process	3.93E-03
57	GO:0010206: photosystem II repair	4.44E-03
58	GO:0000373: Group II intron splicing	4.44E-03
59	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	4.99E-03
60	GO:0006779: porphyrin-containing compound biosynthetic process	4.99E-03
61	GO:0006349: regulation of gene expression by genetic imprinting	4.99E-03
62	GO:0030001: metal ion transport	5.01E-03
63	GO:0006412: translation	5.26E-03
64	GO:0043069: negative regulation of programmed cell death	5.55E-03
65	GO:0010162: seed dormancy process	5.55E-03
66	GO:0006782: protoporphyrinogen IX biosynthetic process	5.55E-03
67	GO:0009658: chloroplast organization	5.73E-03
68	GO:0010216: maintenance of DNA methylation	6.13E-03
69	GO:0006415: translational termination	6.13E-03
70	GO:0009807: lignan biosynthetic process	6.13E-03
71	GO:0018119: peptidyl-cysteine S-nitrosylation	6.13E-03
72	GO:0006820: anion transport	6.73E-03
73	GO:0050826: response to freezing	7.36E-03
74	GO:0009767: photosynthetic electron transport chain	7.36E-03
75	GO:0006006: glucose metabolic process	7.36E-03
76	GO:0010207: photosystem II assembly	8.01E-03
77	GO:0006071: glycerol metabolic process	9.35E-03
78	GO:0045454: cell redox homeostasis	9.48E-03
79	GO:0042545: cell wall modification	1.06E-02
80	GO:0006418: tRNA aminoacylation for protein translation	1.08E-02
81	GO:0010026: trichome differentiation	1.08E-02
82	GO:0019915: lipid storage	1.15E-02
83	GO:0031408: oxylipin biosynthetic process	1.15E-02
84	GO:0006012: galactose metabolic process	1.31E-02
85	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.31E-02
86	GO:0009294: DNA mediated transformation	1.31E-02
87	GO:0008152: metabolic process	1.40E-02
88	GO:0016117: carotenoid biosynthetic process	1.47E-02
89	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.47E-02
90	GO:0010182: sugar mediated signaling pathway	1.63E-02
91	GO:0008360: regulation of cell shape	1.63E-02
92	GO:0009958: positive gravitropism	1.63E-02
93	GO:0006520: cellular amino acid metabolic process	1.63E-02
94	GO:0019252: starch biosynthetic process	1.81E-02
95	GO:0045490: pectin catabolic process	1.89E-02
96	GO:0080156: mitochondrial mRNA modification	1.90E-02
97	GO:0071554: cell wall organization or biogenesis	1.90E-02
98	GO:0007264: small GTPase mediated signal transduction	1.99E-02
99	GO:0030163: protein catabolic process	2.08E-02
100	GO:0009828: plant-type cell wall loosening	2.18E-02
101	GO:0009735: response to cytokinin	2.28E-02
102	GO:0051607: defense response to virus	2.37E-02
103	GO:0010027: thylakoid membrane organization	2.47E-02
104	GO:0042128: nitrate assimilation	2.67E-02
105	GO:0010411: xyloglucan metabolic process	2.77E-02
106	GO:0016311: dephosphorylation	2.88E-02
107	GO:0009817: defense response to fungus, incompatible interaction	2.98E-02
108	GO:0048481: plant ovule development	2.98E-02
109	GO:0009407: toxin catabolic process	3.20E-02
110	GO:0009910: negative regulation of flower development	3.31E-02
111	GO:0006865: amino acid transport	3.42E-02
112	GO:0006839: mitochondrial transport	3.87E-02
113	GO:0006631: fatty acid metabolic process	3.99E-02
114	GO:0015979: photosynthesis	4.12E-02
115	GO:0042546: cell wall biogenesis	4.35E-02
116	GO:0009636: response to toxic substance	4.59E-02
117	GO:0006855: drug transmembrane transport	4.71E-02
118	GO:0009664: plant-type cell wall organization	4.96E-02
119	GO:0042538: hyperosmotic salinity response	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0051920: peroxiredoxin activity	9.18E-05
9	GO:0016209: antioxidant activity	1.56E-04
10	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.93E-04
11	GO:0004560: alpha-L-fucosidase activity	1.93E-04
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.93E-04
13	GO:0080132: fatty acid alpha-hydroxylase activity	1.93E-04
14	GO:0003867: 4-aminobutyrate transaminase activity	1.93E-04
15	GO:0019843: rRNA binding	3.37E-04
16	GO:0010283: pinoresinol reductase activity	4.33E-04
17	GO:0003839: gamma-glutamylcyclotransferase activity	4.33E-04
18	GO:0004047: aminomethyltransferase activity	4.33E-04
19	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.33E-04
20	GO:0004614: phosphoglucomutase activity	4.33E-04
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.06E-04
22	GO:0016531: copper chaperone activity	7.06E-04
23	GO:0019829: cation-transporting ATPase activity	7.06E-04
24	GO:0002161: aminoacyl-tRNA editing activity	7.06E-04
25	GO:0004075: biotin carboxylase activity	7.06E-04
26	GO:0030267: glyoxylate reductase (NADP) activity	7.06E-04
27	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.88E-04
28	GO:0043023: ribosomal large subunit binding	1.01E-03
29	GO:0008097: 5S rRNA binding	1.01E-03
30	GO:0001872: (1->3)-beta-D-glucan binding	1.01E-03
31	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.01E-03
32	GO:0016851: magnesium chelatase activity	1.01E-03
33	GO:0016149: translation release factor activity, codon specific	1.01E-03
34	GO:0016836: hydro-lyase activity	1.34E-03
35	GO:0003989: acetyl-CoA carboxylase activity	1.70E-03
36	GO:0008381: mechanically-gated ion channel activity	1.70E-03
37	GO:0003735: structural constituent of ribosome	1.75E-03
38	GO:0008200: ion channel inhibitor activity	2.10E-03
39	GO:0080030: methyl indole-3-acetate esterase activity	2.10E-03
40	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.10E-03
41	GO:0015631: tubulin binding	2.52E-03
42	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.52E-03
43	GO:0016597: amino acid binding	2.52E-03
44	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.52E-03
45	GO:0004427: inorganic diphosphatase activity	2.96E-03
46	GO:0043295: glutathione binding	2.96E-03
47	GO:0004519: endonuclease activity	3.05E-03
48	GO:0008312: 7S RNA binding	3.43E-03
49	GO:0004034: aldose 1-epimerase activity	3.43E-03
50	GO:0004033: aldo-keto reductase (NADP) activity	3.43E-03
51	GO:0005375: copper ion transmembrane transporter activity	3.93E-03
52	GO:0003747: translation release factor activity	4.44E-03
53	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.44E-03
54	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.13E-03
55	GO:0008378: galactosyltransferase activity	6.73E-03
56	GO:0000049: tRNA binding	6.73E-03
57	GO:0004565: beta-galactosidase activity	7.36E-03
58	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.36E-03
59	GO:0004022: alcohol dehydrogenase (NAD) activity	7.36E-03
60	GO:0045330: aspartyl esterase activity	8.45E-03
61	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.35E-03
62	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.35E-03
63	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.35E-03
64	GO:0005528: FK506 binding	1.01E-02
65	GO:0030599: pectinesterase activity	1.02E-02
66	GO:0043424: protein histidine kinase binding	1.08E-02
67	GO:0008324: cation transmembrane transporter activity	1.08E-02
68	GO:0016758: transferase activity, transferring hexosyl groups	1.33E-02
69	GO:0004812: aminoacyl-tRNA ligase activity	1.47E-02
70	GO:0004252: serine-type endopeptidase activity	1.52E-02
71	GO:0003713: transcription coactivator activity	1.63E-02
72	GO:0016853: isomerase activity	1.72E-02
73	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.90E-02
74	GO:0008483: transaminase activity	2.27E-02
75	GO:0016413: O-acetyltransferase activity	2.37E-02
76	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.77E-02
77	GO:0030247: polysaccharide binding	2.77E-02
78	GO:0016491: oxidoreductase activity	2.80E-02
79	GO:0008168: methyltransferase activity	2.81E-02
80	GO:0000287: magnesium ion binding	2.87E-02
81	GO:0008236: serine-type peptidase activity	2.88E-02
82	GO:0004601: peroxidase activity	2.92E-02
83	GO:0016788: hydrolase activity, acting on ester bonds	2.98E-02
84	GO:0015238: drug transmembrane transporter activity	3.09E-02
85	GO:0005096: GTPase activator activity	3.09E-02
86	GO:0030145: manganese ion binding	3.31E-02
87	GO:0003993: acid phosphatase activity	3.64E-02
88	GO:0005507: copper ion binding	3.96E-02
89	GO:0004364: glutathione transferase activity	4.11E-02
90	GO:0015293: symporter activity	4.59E-02
91	GO:0051287: NAD binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0070971: endoplasmic reticulum exit site	0.00E+00
3	GO:0009507: chloroplast	2.62E-21
4	GO:0009570: chloroplast stroma	1.32E-17
5	GO:0009941: chloroplast envelope	4.96E-16
6	GO:0009579: thylakoid	1.64E-06
7	GO:0009533: chloroplast stromal thylakoid	1.72E-06
8	GO:0009535: chloroplast thylakoid membrane	7.97E-06
9	GO:0009534: chloroplast thylakoid	1.56E-05
10	GO:0009543: chloroplast thylakoid lumen	3.55E-05
11	GO:0031977: thylakoid lumen	6.34E-05
12	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.93E-04
13	GO:0080085: signal recognition particle, chloroplast targeting	4.33E-04
14	GO:0009505: plant-type cell wall	6.40E-04
15	GO:0010007: magnesium chelatase complex	7.06E-04
16	GO:0048046: apoplast	7.57E-04
17	GO:0005840: ribosome	1.60E-03
18	GO:0009536: plastid	2.18E-03
19	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.93E-03
20	GO:0046658: anchored component of plasma membrane	4.70E-03
21	GO:0000311: plastid large ribosomal subunit	6.73E-03
22	GO:0031969: chloroplast membrane	7.54E-03
23	GO:0043234: protein complex	9.35E-03
24	GO:0019898: extrinsic component of membrane	1.81E-02
25	GO:0005618: cell wall	2.14E-02
26	GO:0010319: stromule	2.27E-02
27	GO:0022626: cytosolic ribosome	2.42E-02
28	GO:0009707: chloroplast outer membrane	2.98E-02
29	GO:0031225: anchored component of membrane	4.42E-02
30	GO:0016020: membrane	4.71E-02