Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
2GO:0016236: macroautophagy0.00E+00
3GO:0090421: embryonic meristem initiation1.39E-05
4GO:0048508: embryonic meristem development1.39E-05
5GO:0030242: pexophagy1.39E-05
6GO:0034728: nucleosome organization1.39E-05
7GO:0080136: priming of cellular response to stress1.39E-05
8GO:1900036: positive regulation of cellular response to heat1.39E-05
9GO:0000719: photoreactive repair3.65E-05
10GO:2000693: positive regulation of seed maturation3.65E-05
11GO:0002240: response to molecule of oomycetes origin3.65E-05
12GO:0055078: sodium ion homeostasis3.65E-05
13GO:0009945: radial axis specification3.65E-05
14GO:0016584: nucleosome positioning3.65E-05
15GO:0007032: endosome organization6.55E-05
16GO:0043044: ATP-dependent chromatin remodeling6.55E-05
17GO:2000038: regulation of stomatal complex development1.37E-04
18GO:0045324: late endosome to vacuole transport1.37E-04
19GO:0009846: pollen germination2.49E-04
20GO:0009942: longitudinal axis specification2.68E-04
21GO:2000037: regulation of stomatal complex patterning2.68E-04
22GO:0010224: response to UV-B2.77E-04
23GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.15E-04
24GO:0009626: plant-type hypersensitive response3.38E-04
25GO:0016569: covalent chromatin modification3.59E-04
26GO:0055075: potassium ion homeostasis3.65E-04
27GO:0010120: camalexin biosynthetic process4.16E-04
28GO:0009808: lignin metabolic process4.16E-04
29GO:0009880: embryonic pattern specification4.16E-04
30GO:0001708: cell fate specification4.68E-04
31GO:0010345: suberin biosynthetic process4.68E-04
32GO:0008202: steroid metabolic process5.23E-04
33GO:0048268: clathrin coat assembly5.23E-04
34GO:0010152: pollen maturation6.93E-04
35GO:0006470: protein dephosphorylation7.35E-04
36GO:0010229: inflorescence development7.52E-04
37GO:0010143: cutin biosynthetic process8.13E-04
38GO:0007033: vacuole organization8.75E-04
39GO:0010053: root epidermal cell differentiation8.75E-04
40GO:0010025: wax biosynthetic process9.38E-04
41GO:0010073: meristem maintenance1.07E-03
42GO:0008299: isoprenoid biosynthetic process1.07E-03
43GO:0051260: protein homooligomerization1.13E-03
44GO:0009409: response to cold1.15E-03
45GO:0030433: ubiquitin-dependent ERAD pathway1.20E-03
46GO:0009411: response to UV1.27E-03
47GO:0009561: megagametogenesis1.34E-03
48GO:0010091: trichome branching1.34E-03
49GO:0048653: anther development1.49E-03
50GO:0042335: cuticle development1.49E-03
51GO:0006623: protein targeting to vacuole1.72E-03
52GO:0010183: pollen tube guidance1.72E-03
53GO:0000302: response to reactive oxygen species1.80E-03
54GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.80E-03
55GO:0010193: response to ozone1.80E-03
56GO:0007165: signal transduction1.97E-03
57GO:0006914: autophagy2.04E-03
58GO:0016049: cell growth2.66E-03
59GO:0048481: plant ovule development2.75E-03
60GO:0009908: flower development2.77E-03
61GO:0009555: pollen development3.06E-03
62GO:0006897: endocytosis3.63E-03
63GO:0042542: response to hydrogen peroxide3.73E-03
64GO:0009620: response to fungus5.62E-03
65GO:0009553: embryo sac development5.86E-03
66GO:0009414: response to water deprivation6.01E-03
67GO:0015031: protein transport7.82E-03
68GO:0010150: leaf senescence8.74E-03
69GO:0010228: vegetative to reproductive phase transition of meristem9.02E-03
70GO:0010468: regulation of gene expression9.90E-03
71GO:0006468: protein phosphorylation1.04E-02
72GO:0006970: response to osmotic stress1.25E-02
73GO:0007049: cell cycle1.28E-02
74GO:0009723: response to ethylene1.32E-02
75GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.42E-02
76GO:0016192: vesicle-mediated transport1.43E-02
77GO:0016310: phosphorylation1.52E-02
78GO:0006869: lipid transport1.68E-02
79GO:0006281: DNA repair1.82E-02
80GO:0006397: mRNA processing1.88E-02
81GO:0048364: root development1.88E-02
82GO:0009611: response to wounding2.79E-02
83GO:0051301: cell division2.92E-02
84GO:0045893: positive regulation of transcription, DNA-templated3.03E-02
85GO:0042742: defense response to bacterium4.54E-02
86GO:0006979: response to oxidative stress4.56E-02
87GO:0030154: cell differentiation4.82E-02
RankGO TermAdjusted P value
1GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway1.37E-04
2GO:0004712: protein serine/threonine/tyrosine kinase activity1.65E-04
3GO:0035091: phosphatidylinositol binding2.14E-04
4GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides2.68E-04
5GO:0031491: nucleosome binding2.68E-04
6GO:0016301: kinase activity3.35E-04
7GO:0008142: oxysterol binding4.16E-04
8GO:0008138: protein tyrosine/serine/threonine phosphatase activity4.68E-04
9GO:0005545: 1-phosphatidylinositol binding5.78E-04
10GO:0005524: ATP binding6.97E-04
11GO:0004725: protein tyrosine phosphatase activity9.38E-04
12GO:0043424: protein histidine kinase binding1.07E-03
13GO:0004707: MAP kinase activity1.13E-03
14GO:0008094: DNA-dependent ATPase activity1.13E-03
15GO:0004672: protein kinase activity1.27E-03
16GO:0030276: clathrin binding1.56E-03
17GO:0016853: isomerase activity1.64E-03
18GO:0051213: dioxygenase activity2.30E-03
19GO:0016887: ATPase activity2.68E-03
20GO:0004222: metalloendopeptidase activity2.94E-03
21GO:0045735: nutrient reservoir activity5.26E-03
22GO:0004386: helicase activity6.35E-03
23GO:0046982: protein heterodimerization activity1.17E-02
24GO:0005515: protein binding1.43E-02
25GO:0004722: protein serine/threonine phosphatase activity1.68E-02
26GO:0046872: metal ion binding2.19E-02
27GO:0008289: lipid binding2.31E-02
28GO:0004674: protein serine/threonine kinase activity3.05E-02
29GO:0030246: carbohydrate binding3.39E-02
30GO:0008270: zinc ion binding4.60E-02
RankGO TermAdjusted P value
1GO:0071561: nucleus-vacuole junction0.00E+00
2GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I1.39E-05
3GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II1.39E-05
4GO:0032585: multivesicular body membrane9.94E-05
5GO:0005771: multivesicular body2.22E-04
6GO:0034045: pre-autophagosomal structure membrane4.16E-04
7GO:0009574: preprophase band7.52E-04
8GO:0030176: integral component of endoplasmic reticulum membrane8.75E-04
9GO:0005905: clathrin-coated pit1.13E-03
10GO:0030136: clathrin-coated vesicle1.41E-03
11GO:0005770: late endosome1.56E-03
12GO:0005643: nuclear pore2.75E-03
13GO:0009524: phragmoplast7.25E-03
14GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.27E-02
15GO:0005743: mitochondrial inner membrane1.73E-02
16GO:0005886: plasma membrane3.26E-02
17GO:0005802: trans-Golgi network3.84E-02
18GO:0005634: nucleus4.80E-02
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Gene type



Gene DE type