GO Enrichment Analysis of Co-expressed Genes with
AT3G46560
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 2 | GO:0019918: peptidyl-arginine methylation, to symmetrical-dimethyl arginine | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 5 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 6 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 7 | GO:0006412: translation | 8.31E-65 |
| 8 | GO:0042254: ribosome biogenesis | 3.12E-28 |
| 9 | GO:0000027: ribosomal large subunit assembly | 1.17E-09 |
| 10 | GO:0045041: protein import into mitochondrial intermembrane space | 5.31E-07 |
| 11 | GO:0009735: response to cytokinin | 2.85E-06 |
| 12 | GO:0031167: rRNA methylation | 1.50E-05 |
| 13 | GO:0006364: rRNA processing | 2.33E-05 |
| 14 | GO:0006458: 'de novo' protein folding | 3.24E-05 |
| 15 | GO:0042026: protein refolding | 3.24E-05 |
| 16 | GO:0000028: ribosomal small subunit assembly | 5.73E-05 |
| 17 | GO:0001510: RNA methylation | 7.24E-05 |
| 18 | GO:0006407: rRNA export from nucleus | 1.00E-04 |
| 19 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.00E-04 |
| 20 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.00E-04 |
| 21 | GO:0010220: positive regulation of vernalization response | 2.36E-04 |
| 22 | GO:0045905: positive regulation of translational termination | 2.36E-04 |
| 23 | GO:0045901: positive regulation of translational elongation | 2.36E-04 |
| 24 | GO:0006452: translational frameshifting | 2.36E-04 |
| 25 | GO:0009793: embryo development ending in seed dormancy | 3.19E-04 |
| 26 | GO:0006954: inflammatory response | 3.92E-04 |
| 27 | GO:1902626: assembly of large subunit precursor of preribosome | 3.92E-04 |
| 28 | GO:0002181: cytoplasmic translation | 3.92E-04 |
| 29 | GO:0042256: mature ribosome assembly | 3.92E-04 |
| 30 | GO:0061077: chaperone-mediated protein folding | 3.94E-04 |
| 31 | GO:0007005: mitochondrion organization | 4.31E-04 |
| 32 | GO:0051131: chaperone-mediated protein complex assembly | 5.64E-04 |
| 33 | GO:0006986: response to unfolded protein | 5.64E-04 |
| 34 | GO:0070301: cellular response to hydrogen peroxide | 5.64E-04 |
| 35 | GO:0051085: chaperone mediated protein folding requiring cofactor | 5.64E-04 |
| 36 | GO:0006241: CTP biosynthetic process | 5.64E-04 |
| 37 | GO:0006165: nucleoside diphosphate phosphorylation | 5.64E-04 |
| 38 | GO:0006228: UTP biosynthetic process | 5.64E-04 |
| 39 | GO:0046686: response to cadmium ion | 5.75E-04 |
| 40 | GO:0008033: tRNA processing | 5.95E-04 |
| 41 | GO:0006183: GTP biosynthetic process | 7.50E-04 |
| 42 | GO:0071493: cellular response to UV-B | 9.47E-04 |
| 43 | GO:0006413: translational initiation | 9.73E-04 |
| 44 | GO:0042255: ribosome assembly | 1.87E-03 |
| 45 | GO:0001558: regulation of cell growth | 2.14E-03 |
| 46 | GO:0000387: spliceosomal snRNP assembly | 2.70E-03 |
| 47 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 3.63E-03 |
| 48 | GO:0012501: programmed cell death | 3.63E-03 |
| 49 | GO:0006820: anion transport | 3.63E-03 |
| 50 | GO:0006626: protein targeting to mitochondrion | 3.95E-03 |
| 51 | GO:0010229: inflorescence development | 3.95E-03 |
| 52 | GO:0010102: lateral root morphogenesis | 3.95E-03 |
| 53 | GO:0048467: gynoecium development | 4.30E-03 |
| 54 | GO:0030150: protein import into mitochondrial matrix | 5.37E-03 |
| 55 | GO:0051302: regulation of cell division | 5.75E-03 |
| 56 | GO:0015992: proton transport | 6.14E-03 |
| 57 | GO:0000413: protein peptidyl-prolyl isomerization | 8.21E-03 |
| 58 | GO:0009651: response to salt stress | 8.94E-03 |
| 59 | GO:0009791: post-embryonic development | 9.56E-03 |
| 60 | GO:0032502: developmental process | 1.05E-02 |
| 61 | GO:0016049: cell growth | 1.51E-02 |
| 62 | GO:0006811: ion transport | 1.68E-02 |
| 63 | GO:0048527: lateral root development | 1.74E-02 |
| 64 | GO:0010043: response to zinc ion | 1.74E-02 |
| 65 | GO:0006099: tricarboxylic acid cycle | 1.91E-02 |
| 66 | GO:0009408: response to heat | 2.17E-02 |
| 67 | GO:0008283: cell proliferation | 2.22E-02 |
| 68 | GO:0009965: leaf morphogenesis | 2.41E-02 |
| 69 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.55E-02 |
| 70 | GO:0009409: response to cold | 2.90E-02 |
| 71 | GO:0009909: regulation of flower development | 2.95E-02 |
| 72 | GO:0009734: auxin-activated signaling pathway | 3.05E-02 |
| 73 | GO:0006096: glycolytic process | 3.09E-02 |
| 74 | GO:0009620: response to fungus | 3.31E-02 |
| 75 | GO:0000398: mRNA splicing, via spliceosome | 3.91E-02 |
| 76 | GO:0006457: protein folding | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 2 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 3 | GO:0003735: structural constituent of ribosome | 1.86E-75 |
| 4 | GO:0003729: mRNA binding | 7.38E-25 |
| 5 | GO:0003723: RNA binding | 1.30E-08 |
| 6 | GO:0008649: rRNA methyltransferase activity | 2.01E-06 |
| 7 | GO:0030515: snoRNA binding | 4.38E-05 |
| 8 | GO:0048037: cofactor binding | 1.00E-04 |
| 9 | GO:0005507: copper ion binding | 1.01E-04 |
| 10 | GO:0044183: protein binding involved in protein folding | 1.52E-04 |
| 11 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 2.36E-04 |
| 12 | GO:0004634: phosphopyruvate hydratase activity | 2.36E-04 |
| 13 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 2.36E-04 |
| 14 | GO:0008469: histone-arginine N-methyltransferase activity | 3.92E-04 |
| 15 | GO:0051082: unfolded protein binding | 5.38E-04 |
| 16 | GO:0004550: nucleoside diphosphate kinase activity | 5.64E-04 |
| 17 | GO:0008097: 5S rRNA binding | 5.64E-04 |
| 18 | GO:0008276: protein methyltransferase activity | 5.64E-04 |
| 19 | GO:0003743: translation initiation factor activity | 1.28E-03 |
| 20 | GO:0008143: poly(A) binding | 1.62E-03 |
| 21 | GO:0008235: metalloexopeptidase activity | 1.62E-03 |
| 22 | GO:0043022: ribosome binding | 1.87E-03 |
| 23 | GO:0015288: porin activity | 1.87E-03 |
| 24 | GO:0008308: voltage-gated anion channel activity | 2.14E-03 |
| 25 | GO:0001055: RNA polymerase II activity | 2.70E-03 |
| 26 | GO:0001054: RNA polymerase I activity | 3.31E-03 |
| 27 | GO:0001056: RNA polymerase III activity | 3.63E-03 |
| 28 | GO:0015266: protein channel activity | 3.95E-03 |
| 29 | GO:0051087: chaperone binding | 5.75E-03 |
| 30 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.57E-02 |
| 31 | GO:0003746: translation elongation factor activity | 1.86E-02 |
| 32 | GO:0005198: structural molecule activity | 2.41E-02 |
| 33 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.48E-02 |
| 34 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.75E-02 |
| 35 | GO:0008026: ATP-dependent helicase activity | 3.68E-02 |
| 36 | GO:0019843: rRNA binding | 4.14E-02 |
| 37 | GO:0008565: protein transporter activity | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0022625: cytosolic large ribosomal subunit | 4.17E-56 |
| 3 | GO:0022626: cytosolic ribosome | 1.29E-51 |
| 4 | GO:0005840: ribosome | 2.22E-51 |
| 5 | GO:0005730: nucleolus | 4.97E-37 |
| 6 | GO:0022627: cytosolic small ribosomal subunit | 4.07E-25 |
| 7 | GO:0005829: cytosol | 2.43E-22 |
| 8 | GO:0009506: plasmodesma | 2.14E-20 |
| 9 | GO:0005737: cytoplasm | 5.99E-20 |
| 10 | GO:0005774: vacuolar membrane | 4.20E-12 |
| 11 | GO:0015934: large ribosomal subunit | 4.16E-11 |
| 12 | GO:0016020: membrane | 1.00E-09 |
| 13 | GO:0015935: small ribosomal subunit | 2.10E-09 |
| 14 | GO:0005773: vacuole | 9.51E-08 |
| 15 | GO:0031428: box C/D snoRNP complex | 2.28E-05 |
| 16 | GO:0005886: plasma membrane | 3.54E-05 |
| 17 | GO:0005742: mitochondrial outer membrane translocase complex | 7.24E-05 |
| 18 | GO:0030686: 90S preribosome | 1.00E-04 |
| 19 | GO:0015030: Cajal body | 1.09E-04 |
| 20 | GO:0032040: small-subunit processome | 1.77E-04 |
| 21 | GO:0000015: phosphopyruvate hydratase complex | 2.36E-04 |
| 22 | GO:0005618: cell wall | 2.94E-04 |
| 23 | GO:0034719: SMN-Sm protein complex | 3.92E-04 |
| 24 | GO:0005741: mitochondrial outer membrane | 3.94E-04 |
| 25 | GO:0005682: U5 snRNP | 7.50E-04 |
| 26 | GO:0005687: U4 snRNP | 9.47E-04 |
| 27 | GO:0097526: spliceosomal tri-snRNP complex | 9.47E-04 |
| 28 | GO:0005689: U12-type spliceosomal complex | 1.38E-03 |
| 29 | GO:0071004: U2-type prespliceosome | 1.87E-03 |
| 30 | GO:0046930: pore complex | 2.14E-03 |
| 31 | GO:0005763: mitochondrial small ribosomal subunit | 2.41E-03 |
| 32 | GO:0005736: DNA-directed RNA polymerase I complex | 2.41E-03 |
| 33 | GO:0005685: U1 snRNP | 2.41E-03 |
| 34 | GO:0005666: DNA-directed RNA polymerase III complex | 2.70E-03 |
| 35 | GO:0071011: precatalytic spliceosome | 2.70E-03 |
| 36 | GO:0005686: U2 snRNP | 3.00E-03 |
| 37 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.00E-03 |
| 38 | GO:0005740: mitochondrial envelope | 3.00E-03 |
| 39 | GO:0071013: catalytic step 2 spliceosome | 3.31E-03 |
| 40 | GO:0005665: DNA-directed RNA polymerase II, core complex | 3.63E-03 |
| 41 | GO:0019013: viral nucleocapsid | 3.95E-03 |
| 42 | GO:0005759: mitochondrial matrix | 6.93E-03 |
| 43 | GO:0009507: chloroplast | 8.98E-03 |
| 44 | GO:0016592: mediator complex | 1.05E-02 |
| 45 | GO:0030529: intracellular ribonucleoprotein complex | 1.30E-02 |
| 46 | GO:0005622: intracellular | 1.68E-02 |
| 47 | GO:0005681: spliceosomal complex | 3.09E-02 |
| 48 | GO:0005747: mitochondrial respiratory chain complex I | 3.17E-02 |
| 49 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.76E-02 |