GO Enrichment Analysis of Co-expressed Genes with
AT3G46130
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 2 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 3 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 4 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 7 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 8 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 9 | GO:0032544: plastid translation | 3.63E-10 |
| 10 | GO:0006412: translation | 3.14E-07 |
| 11 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.41E-06 |
| 12 | GO:0042254: ribosome biogenesis | 3.64E-06 |
| 13 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.27E-04 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.27E-04 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 2.27E-04 |
| 16 | GO:0042371: vitamin K biosynthetic process | 2.27E-04 |
| 17 | GO:1902458: positive regulation of stomatal opening | 2.27E-04 |
| 18 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.27E-04 |
| 19 | GO:0019684: photosynthesis, light reaction | 4.83E-04 |
| 20 | GO:0009773: photosynthetic electron transport in photosystem I | 4.83E-04 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.05E-04 |
| 22 | GO:0034755: iron ion transmembrane transport | 5.05E-04 |
| 23 | GO:0018026: peptidyl-lysine monomethylation | 5.05E-04 |
| 24 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.05E-04 |
| 25 | GO:0010270: photosystem II oxygen evolving complex assembly | 5.05E-04 |
| 26 | GO:0009767: photosynthetic electron transport chain | 6.27E-04 |
| 27 | GO:0006954: inflammatory response | 8.21E-04 |
| 28 | GO:0006518: peptide metabolic process | 8.21E-04 |
| 29 | GO:0016556: mRNA modification | 1.17E-03 |
| 30 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.17E-03 |
| 31 | GO:0006424: glutamyl-tRNA aminoacylation | 1.17E-03 |
| 32 | GO:2001141: regulation of RNA biosynthetic process | 1.17E-03 |
| 33 | GO:0009152: purine ribonucleotide biosynthetic process | 1.17E-03 |
| 34 | GO:0046653: tetrahydrofolate metabolic process | 1.17E-03 |
| 35 | GO:2000122: negative regulation of stomatal complex development | 1.56E-03 |
| 36 | GO:0010037: response to carbon dioxide | 1.56E-03 |
| 37 | GO:0006808: regulation of nitrogen utilization | 1.56E-03 |
| 38 | GO:0015976: carbon utilization | 1.56E-03 |
| 39 | GO:0016117: carotenoid biosynthetic process | 1.63E-03 |
| 40 | GO:0032543: mitochondrial translation | 1.99E-03 |
| 41 | GO:0010236: plastoquinone biosynthetic process | 1.99E-03 |
| 42 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.99E-03 |
| 43 | GO:0009247: glycolipid biosynthetic process | 1.99E-03 |
| 44 | GO:0006828: manganese ion transport | 2.45E-03 |
| 45 | GO:0032973: amino acid export | 2.45E-03 |
| 46 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 2.45E-03 |
| 47 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.45E-03 |
| 48 | GO:0010190: cytochrome b6f complex assembly | 2.45E-03 |
| 49 | GO:0010405: arabinogalactan protein metabolic process | 2.45E-03 |
| 50 | GO:0016554: cytidine to uridine editing | 2.45E-03 |
| 51 | GO:0042026: protein refolding | 2.94E-03 |
| 52 | GO:0042372: phylloquinone biosynthetic process | 2.94E-03 |
| 53 | GO:0006458: 'de novo' protein folding | 2.94E-03 |
| 54 | GO:0010019: chloroplast-nucleus signaling pathway | 2.94E-03 |
| 55 | GO:0010027: thylakoid membrane organization | 3.36E-03 |
| 56 | GO:0006821: chloride transport | 3.47E-03 |
| 57 | GO:0009395: phospholipid catabolic process | 3.47E-03 |
| 58 | GO:0009772: photosynthetic electron transport in photosystem II | 3.47E-03 |
| 59 | GO:0043090: amino acid import | 3.47E-03 |
| 60 | GO:0010439: regulation of glucosinolate biosynthetic process | 4.02E-03 |
| 61 | GO:0019375: galactolipid biosynthetic process | 4.02E-03 |
| 62 | GO:2000070: regulation of response to water deprivation | 4.02E-03 |
| 63 | GO:0048564: photosystem I assembly | 4.02E-03 |
| 64 | GO:0017004: cytochrome complex assembly | 4.60E-03 |
| 65 | GO:0071482: cellular response to light stimulus | 4.60E-03 |
| 66 | GO:0009407: toxin catabolic process | 4.82E-03 |
| 67 | GO:0006810: transport | 4.95E-03 |
| 68 | GO:0009821: alkaloid biosynthetic process | 5.22E-03 |
| 69 | GO:0010206: photosystem II repair | 5.22E-03 |
| 70 | GO:0080144: amino acid homeostasis | 5.22E-03 |
| 71 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.22E-03 |
| 72 | GO:0009853: photorespiration | 5.54E-03 |
| 73 | GO:1900865: chloroplast RNA modification | 5.85E-03 |
| 74 | GO:0030001: metal ion transport | 6.32E-03 |
| 75 | GO:0043069: negative regulation of programmed cell death | 6.51E-03 |
| 76 | GO:0006415: translational termination | 7.20E-03 |
| 77 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.20E-03 |
| 78 | GO:0009073: aromatic amino acid family biosynthetic process | 7.20E-03 |
| 79 | GO:0006879: cellular iron ion homeostasis | 7.20E-03 |
| 80 | GO:0006352: DNA-templated transcription, initiation | 7.20E-03 |
| 81 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.20E-03 |
| 82 | GO:0006816: calcium ion transport | 7.20E-03 |
| 83 | GO:0009658: chloroplast organization | 7.71E-03 |
| 84 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.92E-03 |
| 85 | GO:0009735: response to cytokinin | 8.00E-03 |
| 86 | GO:0009636: response to toxic substance | 8.03E-03 |
| 87 | GO:0010628: positive regulation of gene expression | 8.66E-03 |
| 88 | GO:0006006: glucose metabolic process | 8.66E-03 |
| 89 | GO:0010207: photosystem II assembly | 9.42E-03 |
| 90 | GO:0090351: seedling development | 1.02E-02 |
| 91 | GO:0000027: ribosomal large subunit assembly | 1.19E-02 |
| 92 | GO:0015979: photosynthesis | 1.20E-02 |
| 93 | GO:0016575: histone deacetylation | 1.27E-02 |
| 94 | GO:0061077: chaperone-mediated protein folding | 1.36E-02 |
| 95 | GO:0035428: hexose transmembrane transport | 1.45E-02 |
| 96 | GO:0006730: one-carbon metabolic process | 1.45E-02 |
| 97 | GO:0006012: galactose metabolic process | 1.54E-02 |
| 98 | GO:0019722: calcium-mediated signaling | 1.64E-02 |
| 99 | GO:0009306: protein secretion | 1.64E-02 |
| 100 | GO:0009058: biosynthetic process | 1.82E-02 |
| 101 | GO:0000413: protein peptidyl-prolyl isomerization | 1.83E-02 |
| 102 | GO:0046323: glucose import | 1.93E-02 |
| 103 | GO:0009790: embryo development | 2.02E-02 |
| 104 | GO:0006814: sodium ion transport | 2.03E-02 |
| 105 | GO:0002229: defense response to oomycetes | 2.24E-02 |
| 106 | GO:0019761: glucosinolate biosynthetic process | 2.35E-02 |
| 107 | GO:1901657: glycosyl compound metabolic process | 2.46E-02 |
| 108 | GO:0007267: cell-cell signaling | 2.68E-02 |
| 109 | GO:0009627: systemic acquired resistance | 3.15E-02 |
| 110 | GO:0042128: nitrate assimilation | 3.15E-02 |
| 111 | GO:0015995: chlorophyll biosynthetic process | 3.27E-02 |
| 112 | GO:0009793: embryo development ending in seed dormancy | 3.35E-02 |
| 113 | GO:0018298: protein-chromophore linkage | 3.52E-02 |
| 114 | GO:0009817: defense response to fungus, incompatible interaction | 3.52E-02 |
| 115 | GO:0010119: regulation of stomatal movement | 3.90E-02 |
| 116 | GO:0009637: response to blue light | 4.17E-02 |
| 117 | GO:0006839: mitochondrial transport | 4.57E-02 |
| 118 | GO:0006631: fatty acid metabolic process | 4.71E-02 |
| 119 | GO:0005975: carbohydrate metabolic process | 4.82E-02 |
| 120 | GO:0010114: response to red light | 4.98E-02 |
| 121 | GO:0051707: response to other organism | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 2 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 3 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 6 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 7 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 1.39E-11 |
| 9 | GO:0003735: structural constituent of ribosome | 4.11E-09 |
| 10 | GO:0051920: peroxiredoxin activity | 1.19E-04 |
| 11 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.19E-04 |
| 12 | GO:0004033: aldo-keto reductase (NADP) activity | 2.00E-04 |
| 13 | GO:0016209: antioxidant activity | 2.00E-04 |
| 14 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.27E-04 |
| 15 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.27E-04 |
| 16 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.27E-04 |
| 17 | GO:0080132: fatty acid alpha-hydroxylase activity | 2.27E-04 |
| 18 | GO:0016788: hydrolase activity, acting on ester bonds | 2.97E-04 |
| 19 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.05E-04 |
| 20 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 5.05E-04 |
| 21 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 5.05E-04 |
| 22 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 5.05E-04 |
| 23 | GO:0004751: ribose-5-phosphate isomerase activity | 8.21E-04 |
| 24 | GO:0030267: glyoxylate reductase (NADP) activity | 8.21E-04 |
| 25 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 8.21E-04 |
| 26 | GO:0070402: NADPH binding | 8.21E-04 |
| 27 | GO:0008864: formyltetrahydrofolate deformylase activity | 8.21E-04 |
| 28 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 8.21E-04 |
| 29 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 8.21E-04 |
| 30 | GO:0017150: tRNA dihydrouridine synthase activity | 8.21E-04 |
| 31 | GO:0005528: FK506 binding | 9.67E-04 |
| 32 | GO:0016851: magnesium chelatase activity | 1.17E-03 |
| 33 | GO:0035250: UDP-galactosyltransferase activity | 1.17E-03 |
| 34 | GO:0048487: beta-tubulin binding | 1.17E-03 |
| 35 | GO:0016149: translation release factor activity, codon specific | 1.17E-03 |
| 36 | GO:0043023: ribosomal large subunit binding | 1.17E-03 |
| 37 | GO:0008097: 5S rRNA binding | 1.17E-03 |
| 38 | GO:0008508: bile acid:sodium symporter activity | 1.17E-03 |
| 39 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.18E-03 |
| 40 | GO:0043495: protein anchor | 1.56E-03 |
| 41 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.56E-03 |
| 42 | GO:0004659: prenyltransferase activity | 1.56E-03 |
| 43 | GO:0016279: protein-lysine N-methyltransferase activity | 1.56E-03 |
| 44 | GO:0001053: plastid sigma factor activity | 1.56E-03 |
| 45 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.56E-03 |
| 46 | GO:0016987: sigma factor activity | 1.56E-03 |
| 47 | GO:0008200: ion channel inhibitor activity | 2.45E-03 |
| 48 | GO:0005247: voltage-gated chloride channel activity | 2.45E-03 |
| 49 | GO:0080030: methyl indole-3-acetate esterase activity | 2.45E-03 |
| 50 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 2.45E-03 |
| 51 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.94E-03 |
| 52 | GO:0019899: enzyme binding | 3.47E-03 |
| 53 | GO:0043295: glutathione binding | 3.47E-03 |
| 54 | GO:0004034: aldose 1-epimerase activity | 4.02E-03 |
| 55 | GO:0008236: serine-type peptidase activity | 4.16E-03 |
| 56 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 4.60E-03 |
| 57 | GO:0004222: metalloendopeptidase activity | 4.82E-03 |
| 58 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 5.22E-03 |
| 59 | GO:0003747: translation release factor activity | 5.22E-03 |
| 60 | GO:0005384: manganese ion transmembrane transporter activity | 5.85E-03 |
| 61 | GO:0047617: acyl-CoA hydrolase activity | 5.85E-03 |
| 62 | GO:0016844: strictosidine synthase activity | 5.85E-03 |
| 63 | GO:0005381: iron ion transmembrane transporter activity | 5.85E-03 |
| 64 | GO:0004364: glutathione transferase activity | 6.86E-03 |
| 65 | GO:0044183: protein binding involved in protein folding | 7.20E-03 |
| 66 | GO:0004601: peroxidase activity | 7.71E-03 |
| 67 | GO:0008378: galactosyltransferase activity | 7.92E-03 |
| 68 | GO:0004089: carbonate dehydratase activity | 8.66E-03 |
| 69 | GO:0015095: magnesium ion transmembrane transporter activity | 8.66E-03 |
| 70 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.42E-03 |
| 71 | GO:0004407: histone deacetylase activity | 1.19E-02 |
| 72 | GO:0043424: protein histidine kinase binding | 1.27E-02 |
| 73 | GO:0022891: substrate-specific transmembrane transporter activity | 1.54E-02 |
| 74 | GO:0016758: transferase activity, transferring hexosyl groups | 1.68E-02 |
| 75 | GO:0004519: endonuclease activity | 1.85E-02 |
| 76 | GO:0008080: N-acetyltransferase activity | 1.93E-02 |
| 77 | GO:0005355: glucose transmembrane transporter activity | 2.03E-02 |
| 78 | GO:0016853: isomerase activity | 2.03E-02 |
| 79 | GO:0019901: protein kinase binding | 2.14E-02 |
| 80 | GO:0005509: calcium ion binding | 2.34E-02 |
| 81 | GO:0008237: metallopeptidase activity | 2.68E-02 |
| 82 | GO:0016597: amino acid binding | 2.80E-02 |
| 83 | GO:0051213: dioxygenase activity | 2.91E-02 |
| 84 | GO:0003824: catalytic activity | 3.02E-02 |
| 85 | GO:0016168: chlorophyll binding | 3.03E-02 |
| 86 | GO:0102483: scopolin beta-glucosidase activity | 3.27E-02 |
| 87 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 3.40E-02 |
| 88 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 4.30E-02 |
| 89 | GO:0003993: acid phosphatase activity | 4.30E-02 |
| 90 | GO:0008422: beta-glucosidase activity | 4.43E-02 |
| 91 | GO:0050661: NADP binding | 4.57E-02 |
| 92 | GO:0030246: carbohydrate binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.09E-46 |
| 3 | GO:0009941: chloroplast envelope | 1.69E-22 |
| 4 | GO:0009570: chloroplast stroma | 1.71E-20 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.41E-17 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.75E-16 |
| 7 | GO:0009579: thylakoid | 2.30E-10 |
| 8 | GO:0005840: ribosome | 7.28E-09 |
| 9 | GO:0031977: thylakoid lumen | 7.41E-09 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 2.07E-06 |
| 11 | GO:0009534: chloroplast thylakoid | 4.42E-06 |
| 12 | GO:0019898: extrinsic component of membrane | 1.06E-05 |
| 13 | GO:0030095: chloroplast photosystem II | 3.55E-05 |
| 14 | GO:0009533: chloroplast stromal thylakoid | 1.57E-04 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.27E-04 |
| 16 | GO:0009536: plastid | 2.83E-04 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.00E-04 |
| 18 | GO:0031969: chloroplast membrane | 4.27E-04 |
| 19 | GO:0033281: TAT protein transport complex | 8.21E-04 |
| 20 | GO:0010007: magnesium chelatase complex | 8.21E-04 |
| 21 | GO:0034707: chloride channel complex | 2.45E-03 |
| 22 | GO:0015934: large ribosomal subunit | 5.06E-03 |
| 23 | GO:0000311: plastid large ribosomal subunit | 7.92E-03 |
| 24 | GO:0000312: plastid small ribosomal subunit | 9.42E-03 |
| 25 | GO:0022625: cytosolic large ribosomal subunit | 1.08E-02 |
| 26 | GO:0042651: thylakoid membrane | 1.27E-02 |
| 27 | GO:0009523: photosystem II | 2.14E-02 |
| 28 | GO:0016592: mediator complex | 2.35E-02 |
| 29 | GO:0016020: membrane | 2.97E-02 |
| 30 | GO:0022626: cytosolic ribosome | 3.23E-02 |
| 31 | GO:0009707: chloroplast outer membrane | 3.52E-02 |