Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G45640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0048227: plasma membrane to endosome transport0.00E+00
2GO:0032780: negative regulation of ATPase activity0.00E+00
3GO:0046292: formaldehyde metabolic process0.00E+00
4GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
5GO:0006069: ethanol oxidation0.00E+00
6GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
7GO:1904215: regulation of protein import into chloroplast stroma0.00E+00
8GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
9GO:0006468: protein phosphorylation1.07E-10
10GO:0006952: defense response2.06E-07
11GO:0006212: uracil catabolic process5.29E-06
12GO:0019483: beta-alanine biosynthetic process5.29E-06
13GO:0046777: protein autophosphorylation6.50E-06
14GO:0048194: Golgi vesicle budding4.12E-05
15GO:0010200: response to chitin4.84E-05
16GO:0042742: defense response to bacterium5.18E-05
17GO:0010102: lateral root morphogenesis7.32E-05
18GO:0060548: negative regulation of cell death7.33E-05
19GO:0007166: cell surface receptor signaling pathway8.09E-05
20GO:0070588: calcium ion transmembrane transport1.06E-04
21GO:1900425: negative regulation of defense response to bacterium1.66E-04
22GO:0031348: negative regulation of defense response2.19E-04
23GO:0010044: response to aluminum ion2.93E-04
24GO:0006643: membrane lipid metabolic process3.42E-04
25GO:0034214: protein hexamerization3.42E-04
26GO:0010201: response to continuous far red light stimulus by the high-irradiance response system3.42E-04
27GO:0048508: embryonic meristem development3.42E-04
28GO:0006805: xenobiotic metabolic process3.42E-04
29GO:0000303: response to superoxide3.42E-04
30GO:0060862: negative regulation of floral organ abscission3.42E-04
31GO:0006605: protein targeting3.67E-04
32GO:0010150: leaf senescence3.88E-04
33GO:0030968: endoplasmic reticulum unfolded protein response4.51E-04
34GO:0043562: cellular response to nitrogen levels4.51E-04
35GO:0051865: protein autoubiquitination5.41E-04
36GO:0035556: intracellular signal transduction5.89E-04
37GO:0019441: tryptophan catabolic process to kynurenine7.45E-04
38GO:0006996: organelle organization7.45E-04
39GO:0002221: pattern recognition receptor signaling pathway7.45E-04
40GO:0043069: negative regulation of programmed cell death7.45E-04
41GO:1905182: positive regulation of urease activity7.45E-04
42GO:0006672: ceramide metabolic process7.45E-04
43GO:0009812: flavonoid metabolic process7.45E-04
44GO:0007584: response to nutrient7.45E-04
45GO:1902000: homogentisate catabolic process7.45E-04
46GO:0030010: establishment of cell polarity7.45E-04
47GO:0031349: positive regulation of defense response7.45E-04
48GO:0009945: radial axis specification7.45E-04
49GO:0009816: defense response to bacterium, incompatible interaction8.55E-04
50GO:0018105: peptidyl-serine phosphorylation8.94E-04
51GO:0006970: response to osmotic stress9.64E-04
52GO:0006807: nitrogen compound metabolic process1.11E-03
53GO:0008219: cell death1.11E-03
54GO:0071492: cellular response to UV-A1.21E-03
55GO:0006517: protein deglycosylation1.21E-03
56GO:0009072: aromatic amino acid family metabolic process1.21E-03
57GO:0048281: inflorescence morphogenesis1.21E-03
58GO:1900140: regulation of seedling development1.21E-03
59GO:0010359: regulation of anion channel activity1.21E-03
60GO:0061158: 3'-UTR-mediated mRNA destabilization1.21E-03
61GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.21E-03
62GO:0006499: N-terminal protein myristoylation1.25E-03
63GO:0009790: embryo development1.51E-03
64GO:0034976: response to endoplasmic reticulum stress1.55E-03
65GO:0006986: response to unfolded protein1.74E-03
66GO:0001676: long-chain fatty acid metabolic process1.74E-03
67GO:0002679: respiratory burst involved in defense response1.74E-03
68GO:0006624: vacuolar protein processing1.74E-03
69GO:0007231: osmosensory signaling pathway1.74E-03
70GO:2001289: lipid X metabolic process1.74E-03
71GO:0070301: cellular response to hydrogen peroxide1.74E-03
72GO:0072334: UDP-galactose transmembrane transport1.74E-03
73GO:0006809: nitric oxide biosynthetic process1.74E-03
74GO:0009399: nitrogen fixation1.74E-03
75GO:0072583: clathrin-dependent endocytosis1.74E-03
76GO:0009738: abscisic acid-activated signaling pathway1.77E-03
77GO:0006886: intracellular protein transport1.79E-03
78GO:0006542: glutamine biosynthetic process2.33E-03
79GO:0071486: cellular response to high light intensity2.33E-03
80GO:0048830: adventitious root development2.33E-03
81GO:0009765: photosynthesis, light harvesting2.33E-03
82GO:0010107: potassium ion import2.33E-03
83GO:0033500: carbohydrate homeostasis2.33E-03
84GO:0080142: regulation of salicylic acid biosynthetic process2.33E-03
85GO:0010508: positive regulation of autophagy2.33E-03
86GO:0006878: cellular copper ion homeostasis2.33E-03
87GO:0031365: N-terminal protein amino acid modification2.98E-03
88GO:0030308: negative regulation of cell growth2.98E-03
89GO:0042631: cellular response to water deprivation3.17E-03
90GO:0010197: polar nucleus fusion3.41E-03
91GO:0009759: indole glucosinolate biosynthetic process3.68E-03
92GO:0035435: phosphate ion transmembrane transport3.68E-03
93GO:0010942: positive regulation of cell death3.68E-03
94GO:0006751: glutathione catabolic process3.68E-03
95GO:1902456: regulation of stomatal opening3.68E-03
96GO:0009267: cellular response to starvation3.68E-03
97GO:0006623: protein targeting to vacuole3.94E-03
98GO:0009620: response to fungus4.21E-03
99GO:0010193: response to ozone4.22E-03
100GO:0010555: response to mannitol4.43E-03
101GO:2000067: regulation of root morphogenesis4.43E-03
102GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.43E-03
103GO:0009612: response to mechanical stimulus4.43E-03
104GO:0000911: cytokinesis by cell plate formation4.43E-03
105GO:0006694: steroid biosynthetic process4.43E-03
106GO:0009942: longitudinal axis specification4.43E-03
107GO:0007264: small GTPase mediated signal transduction4.50E-03
108GO:0009737: response to abscisic acid4.68E-03
109GO:0009610: response to symbiotic fungus5.23E-03
110GO:0046470: phosphatidylcholine metabolic process5.23E-03
111GO:0043090: amino acid import5.23E-03
112GO:0070370: cellular heat acclimation5.23E-03
113GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.23E-03
114GO:0009651: response to salt stress5.40E-03
115GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.57E-03
116GO:0006491: N-glycan processing6.08E-03
117GO:1900150: regulation of defense response to fungus6.08E-03
118GO:0016559: peroxisome fission6.08E-03
119GO:0009819: drought recovery6.08E-03
120GO:0009808: lignin metabolic process6.98E-03
121GO:0006002: fructose 6-phosphate metabolic process6.98E-03
122GO:0009880: embryonic pattern specification6.98E-03
123GO:0010120: camalexin biosynthetic process6.98E-03
124GO:0007186: G-protein coupled receptor signaling pathway6.98E-03
125GO:0048573: photoperiodism, flowering7.19E-03
126GO:0006979: response to oxidative stress7.73E-03
127GO:0009821: alkaloid biosynthetic process7.91E-03
128GO:0090333: regulation of stomatal closure7.91E-03
129GO:0042761: very long-chain fatty acid biosynthetic process8.89E-03
130GO:0048268: clathrin coat assembly8.89E-03
131GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.89E-03
132GO:0008202: steroid metabolic process8.89E-03
133GO:0010119: regulation of stomatal movement9.22E-03
134GO:0009751: response to salicylic acid9.36E-03
135GO:0009641: shade avoidance9.92E-03
136GO:0000103: sulfate assimilation9.92E-03
137GO:0006995: cellular response to nitrogen starvation9.92E-03
138GO:0019538: protein metabolic process9.92E-03
139GO:0009750: response to fructose1.10E-02
140GO:0030148: sphingolipid biosynthetic process1.10E-02
141GO:0009684: indoleacetic acid biosynthetic process1.10E-02
142GO:0072593: reactive oxygen species metabolic process1.10E-02
143GO:0043085: positive regulation of catalytic activity1.10E-02
144GO:0009682: induced systemic resistance1.10E-02
145GO:0052544: defense response by callose deposition in cell wall1.10E-02
146GO:0006470: protein dephosphorylation1.13E-02
147GO:0006897: endocytosis1.20E-02
148GO:0006631: fatty acid metabolic process1.20E-02
149GO:0045037: protein import into chloroplast stroma1.21E-02
150GO:0000266: mitochondrial fission1.21E-02
151GO:0012501: programmed cell death1.21E-02
152GO:0015031: protein transport1.21E-02
153GO:0034605: cellular response to heat1.44E-02
154GO:0007034: vacuolar transport1.44E-02
155GO:0009636: response to toxic substance1.47E-02
156GO:0010053: root epidermal cell differentiation1.56E-02
157GO:0042343: indole glucosinolate metabolic process1.56E-02
158GO:0009901: anther dehiscence1.56E-02
159GO:0000162: tryptophan biosynthetic process1.69E-02
160GO:2000377: regulation of reactive oxygen species metabolic process1.82E-02
161GO:0016575: histone deacetylation1.95E-02
162GO:0009723: response to ethylene1.99E-02
163GO:0098542: defense response to other organism2.08E-02
164GO:0061077: chaperone-mediated protein folding2.08E-02
165GO:0048367: shoot system development2.16E-02
166GO:0009414: response to water deprivation2.17E-02
167GO:0007005: mitochondrion organization2.22E-02
168GO:0009626: plant-type hypersensitive response2.23E-02
169GO:0009611: response to wounding2.34E-02
170GO:0010227: floral organ abscission2.37E-02
171GO:0071215: cellular response to abscisic acid stimulus2.37E-02
172GO:0050832: defense response to fungus2.51E-02
173GO:0010091: trichome branching2.51E-02
174GO:0042147: retrograde transport, endosome to Golgi2.66E-02
175GO:0000413: protein peptidyl-prolyl isomerization2.81E-02
176GO:0042391: regulation of membrane potential2.81E-02
177GO:0010118: stomatal movement2.81E-02
178GO:0046323: glucose import2.96E-02
179GO:0071472: cellular response to salt stress2.96E-02
180GO:0006662: glycerol ether metabolic process2.96E-02
181GO:0061025: membrane fusion3.12E-02
182GO:0048544: recognition of pollen3.12E-02
183GO:0009749: response to glucose3.28E-02
184GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.44E-02
185GO:0000302: response to reactive oxygen species3.44E-02
186GO:0071554: cell wall organization or biogenesis3.44E-02
187GO:0006891: intra-Golgi vesicle-mediated transport3.44E-02
188GO:0002229: defense response to oomycetes3.44E-02
189GO:0009408: response to heat3.54E-02
190GO:0016032: viral process3.61E-02
191GO:0030163: protein catabolic process3.78E-02
192GO:0006914: autophagy3.95E-02
193GO:0010286: heat acclimation4.12E-02
194GO:0040008: regulation of growth4.14E-02
195GO:0051607: defense response to virus4.30E-02
196GO:0009615: response to virus4.47E-02
197GO:0009607: response to biotic stimulus4.65E-02
198GO:0042128: nitrate assimilation4.84E-02
RankGO TermAdjusted P value
1GO:0015575: mannitol transmembrane transporter activity0.00E+00
2GO:0042030: ATPase inhibitor activity0.00E+00
3GO:0016504: peptidase activator activity0.00E+00
4GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
5GO:0016034: maleylacetoacetate isomerase activity0.00E+00
6GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
7GO:0015576: sorbitol transmembrane transporter activity0.00E+00
8GO:0015370: solute:sodium symporter activity0.00E+00
9GO:0003837: beta-ureidopropionase activity0.00E+00
10GO:0070577: lysine-acetylated histone binding0.00E+00
11GO:0004698: calcium-dependent protein kinase C activity0.00E+00
12GO:0033550: MAP kinase tyrosine phosphatase activity0.00E+00
13GO:0015591: D-ribose transmembrane transporter activity0.00E+00
14GO:0015148: D-xylose transmembrane transporter activity0.00E+00
15GO:0004157: dihydropyrimidinase activity0.00E+00
16GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
17GO:0005524: ATP binding2.77E-14
18GO:0016301: kinase activity2.05E-09
19GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.55E-08
20GO:0004012: phospholipid-translocating ATPase activity3.68E-08
21GO:0005516: calmodulin binding3.09E-07
22GO:0004674: protein serine/threonine kinase activity1.02E-05
23GO:0004714: transmembrane receptor protein tyrosine kinase activity1.09E-05
24GO:0005515: protein binding1.59E-05
25GO:0004713: protein tyrosine kinase activity3.77E-05
26GO:0005509: calcium ion binding3.83E-05
27GO:0005388: calcium-transporting ATPase activity7.32E-05
28GO:0004683: calmodulin-dependent protein kinase activity1.12E-04
29GO:0102391: decanoate--CoA ligase activity2.25E-04
30GO:0003950: NAD+ ADP-ribosyltransferase activity2.25E-04
31GO:0004467: long-chain fatty acid-CoA ligase activity2.93E-04
32GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.40E-04
33GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity3.42E-04
34GO:0019786: Atg8-specific protease activity3.42E-04
35GO:0032050: clathrin heavy chain binding3.42E-04
36GO:0015085: calcium ion transmembrane transporter activity3.42E-04
37GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity3.42E-04
38GO:0015168: glycerol transmembrane transporter activity3.42E-04
39GO:0004672: protein kinase activity6.45E-04
40GO:0045140: inositol phosphoceramide synthase activity7.45E-04
41GO:0004061: arylformamidase activity7.45E-04
42GO:0047209: coniferyl-alcohol glucosyltransferase activity7.45E-04
43GO:0019779: Atg8 activating enzyme activity7.45E-04
44GO:0000287: magnesium ion binding8.21E-04
45GO:0009931: calcium-dependent protein serine/threonine kinase activity9.15E-04
46GO:0031683: G-protein beta/gamma-subunit complex binding1.21E-03
47GO:0001664: G-protein coupled receptor binding1.21E-03
48GO:0005093: Rab GDP-dissociation inhibitor activity1.21E-03
49GO:0016151: nickel cation binding1.21E-03
50GO:0005047: signal recognition particle binding1.21E-03
51GO:0016174: NAD(P)H oxidase activity1.21E-03
52GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.21E-03
53GO:0003840: gamma-glutamyltransferase activity1.21E-03
54GO:0036374: glutathione hydrolase activity1.21E-03
55GO:0004190: aspartic-type endopeptidase activity1.39E-03
56GO:0005354: galactose transmembrane transporter activity1.74E-03
57GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.74E-03
58GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.74E-03
59GO:0033612: receptor serine/threonine kinase binding2.09E-03
60GO:0004301: epoxide hydrolase activity2.33E-03
61GO:0015204: urea transmembrane transporter activity2.33E-03
62GO:0070628: proteasome binding2.33E-03
63GO:0019776: Atg8 ligase activity2.33E-03
64GO:0016004: phospholipase activator activity2.33E-03
65GO:0004356: glutamate-ammonia ligase activity2.98E-03
66GO:0005459: UDP-galactose transmembrane transporter activity2.98E-03
67GO:0015145: monosaccharide transmembrane transporter activity2.98E-03
68GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.98E-03
69GO:0005496: steroid binding2.98E-03
70GO:0031593: polyubiquitin binding3.68E-03
71GO:0043531: ADP binding4.39E-03
72GO:0008235: metalloexopeptidase activity5.23E-03
73GO:0003872: 6-phosphofructokinase activity5.23E-03
74GO:0008142: oxysterol binding6.98E-03
75GO:0004630: phospholipase D activity6.98E-03
76GO:0005267: potassium channel activity6.98E-03
77GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.98E-03
78GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity6.98E-03
79GO:0016844: strictosidine synthase activity8.89E-03
80GO:0003924: GTPase activity9.57E-03
81GO:0005545: 1-phosphatidylinositol binding9.92E-03
82GO:0004177: aminopeptidase activity1.10E-02
83GO:0030246: carbohydrate binding1.12E-02
84GO:0004521: endoribonuclease activity1.21E-02
85GO:0019825: oxygen binding1.24E-02
86GO:0005315: inorganic phosphate transmembrane transporter activity1.32E-02
87GO:0005262: calcium channel activity1.32E-02
88GO:0004022: alcohol dehydrogenase (NAD) activity1.32E-02
89GO:0004175: endopeptidase activity1.44E-02
90GO:0015293: symporter activity1.47E-02
91GO:0005198: structural molecule activity1.47E-02
92GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.53E-02
93GO:0030552: cAMP binding1.56E-02
94GO:0030553: cGMP binding1.56E-02
95GO:0005525: GTP binding1.59E-02
96GO:0004725: protein tyrosine phosphatase activity1.69E-02
97GO:0003954: NADH dehydrogenase activity1.82E-02
98GO:0004407: histone deacetylase activity1.82E-02
99GO:0005528: FK506 binding1.82E-02
100GO:0020037: heme binding1.84E-02
101GO:0016887: ATPase activity1.85E-02
102GO:0043424: protein histidine kinase binding1.95E-02
103GO:0005216: ion channel activity1.95E-02
104GO:0004707: MAP kinase activity2.08E-02
105GO:0005506: iron ion binding2.20E-02
106GO:0003727: single-stranded RNA binding2.51E-02
107GO:0003756: protein disulfide isomerase activity2.51E-02
108GO:0047134: protein-disulfide reductase activity2.66E-02
109GO:0005249: voltage-gated potassium channel activity2.81E-02
110GO:0030551: cyclic nucleotide binding2.81E-02
111GO:0042803: protein homodimerization activity2.89E-02
112GO:0030276: clathrin binding2.96E-02
113GO:0001085: RNA polymerase II transcription factor binding2.96E-02
114GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.00E-02
115GO:0004722: protein serine/threonine phosphatase activity3.06E-02
116GO:0004791: thioredoxin-disulfide reductase activity3.12E-02
117GO:0016853: isomerase activity3.12E-02
118GO:0005355: glucose transmembrane transporter activity3.12E-02
119GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.24E-02
120GO:0004197: cysteine-type endopeptidase activity3.61E-02
121GO:0046872: metal ion binding3.63E-02
122GO:0015144: carbohydrate transmembrane transporter activity3.77E-02
123GO:0008565: protein transporter activity3.77E-02
124GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.78E-02
125GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.12E-02
126GO:0005351: sugar:proton symporter activity4.24E-02
127GO:0016413: O-acetyltransferase activity4.30E-02
128GO:0051213: dioxygenase activity4.47E-02
129GO:0016168: chlorophyll binding4.65E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0005886: plasma membrane5.98E-19
3GO:0016021: integral component of membrane3.12E-08
4GO:0005783: endoplasmic reticulum1.11E-06
5GO:0031902: late endosome membrane2.58E-05
6GO:0016363: nuclear matrix2.25E-04
7GO:0005887: integral component of plasma membrane2.79E-04
8GO:0005794: Golgi apparatus6.97E-04
9GO:0030125: clathrin vesicle coat7.45E-04
10GO:0031304: intrinsic component of mitochondrial inner membrane7.45E-04
11GO:0017119: Golgi transport complex7.45E-04
12GO:0042406: extrinsic component of endoplasmic reticulum membrane1.21E-03
13GO:0030139: endocytic vesicle1.21E-03
14GO:0005802: trans-Golgi network1.47E-03
15GO:0005775: vacuolar lumen1.74E-03
16GO:0000323: lytic vacuole1.74E-03
17GO:0005905: clathrin-coated pit2.09E-03
18GO:0005789: endoplasmic reticulum membrane2.13E-03
19GO:0005776: autophagosome2.33E-03
20GO:0005945: 6-phosphofructokinase complex2.98E-03
21GO:0000164: protein phosphatase type 1 complex2.98E-03
22GO:0030904: retromer complex3.68E-03
23GO:0005829: cytosol4.13E-03
24GO:0030173: integral component of Golgi membrane4.43E-03
25GO:0030131: clathrin adaptor complex6.08E-03
26GO:0000421: autophagosome membrane6.08E-03
27GO:0005623: cell6.52E-03
28GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.98E-03
29GO:0005777: peroxisome8.52E-03
30GO:0030665: clathrin-coated vesicle membrane8.89E-03
31GO:0048471: perinuclear region of cytoplasm1.10E-02
32GO:0016602: CCAAT-binding factor complex1.32E-02
33GO:0005795: Golgi stack1.56E-02
34GO:0030176: integral component of endoplasmic reticulum membrane1.56E-02
35GO:0005622: intracellular1.81E-02
36GO:0005768: endosome1.89E-02
37GO:0045271: respiratory chain complex I1.95E-02
38GO:0005839: proteasome core complex2.08E-02
39GO:0005741: mitochondrial outer membrane2.08E-02
40GO:0031410: cytoplasmic vesicle2.22E-02
41GO:0016020: membrane2.62E-02
42GO:0030136: clathrin-coated vesicle2.66E-02
43GO:0009523: photosystem II3.28E-02
44GO:0019898: extrinsic component of membrane3.28E-02
45GO:0009504: cell plate3.28E-02
46GO:0005774: vacuolar membrane3.42E-02
47GO:0005778: peroxisomal membrane4.12E-02
48GO:0030529: intracellular ribonucleoprotein complex4.47E-02
49GO:0005788: endoplasmic reticulum lumen4.65E-02
50GO:0005667: transcription factor complex4.84E-02
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Gene type



Gene DE type