co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G44990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905499: trichome papilla formation	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
6	GO:0010020: chloroplast fission	2.39E-05
7	GO:0048564: photosystem I assembly	1.53E-04
8	GO:0032544: plastid translation	1.91E-04
9	GO:0043686: co-translational protein modification	1.91E-04
10	GO:0005980: glycogen catabolic process	1.91E-04
11	GO:0006949: syncytium formation	3.27E-04
12	GO:0006415: translational termination	3.78E-04
13	GO:0045717: negative regulation of fatty acid biosynthetic process	4.29E-04
14	GO:0080009: mRNA methylation	4.29E-04
15	GO:0008616: queuosine biosynthetic process	4.29E-04
16	GO:0010289: homogalacturonan biosynthetic process	4.29E-04
17	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.29E-04
18	GO:0010198: synergid death	4.29E-04
19	GO:0006633: fatty acid biosynthetic process	4.70E-04
20	GO:0090506: axillary shoot meristem initiation	6.99E-04
21	GO:0007010: cytoskeleton organization	7.65E-04
22	GO:0016998: cell wall macromolecule catabolic process	9.21E-04
23	GO:0043572: plastid fission	9.97E-04
24	GO:0055070: copper ion homeostasis	9.97E-04
25	GO:0010371: regulation of gibberellin biosynthetic process	9.97E-04
26	GO:0009102: biotin biosynthetic process	9.97E-04
27	GO:0010239: chloroplast mRNA processing	9.97E-04
28	GO:0042989: sequestering of actin monomers	9.97E-04
29	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.97E-04
30	GO:0016556: mRNA modification	9.97E-04
31	GO:0006424: glutamyl-tRNA aminoacylation	9.97E-04
32	GO:0046739: transport of virus in multicellular host	9.97E-04
33	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.32E-03
34	GO:0015976: carbon utilization	1.32E-03
35	GO:0008295: spermidine biosynthetic process	1.32E-03
36	GO:0031365: N-terminal protein amino acid modification	1.68E-03
37	GO:0035434: copper ion transmembrane transport	1.68E-03
38	GO:0016123: xanthophyll biosynthetic process	1.68E-03
39	GO:0006665: sphingolipid metabolic process	1.68E-03
40	GO:0048359: mucilage metabolic process involved in seed coat development	1.68E-03
41	GO:0000304: response to singlet oxygen	1.68E-03
42	GO:0045487: gibberellin catabolic process	1.68E-03
43	GO:0030041: actin filament polymerization	1.68E-03
44	GO:0032543: mitochondrial translation	1.68E-03
45	GO:0006014: D-ribose metabolic process	2.07E-03
46	GO:0010405: arabinogalactan protein metabolic process	2.07E-03
47	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.07E-03
48	GO:0016554: cytidine to uridine editing	2.07E-03
49	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.07E-03
50	GO:0006655: phosphatidylglycerol biosynthetic process	2.07E-03
51	GO:0006796: phosphate-containing compound metabolic process	2.07E-03
52	GO:0010190: cytochrome b6f complex assembly	2.07E-03
53	GO:0009828: plant-type cell wall loosening	2.21E-03
54	GO:0009099: valine biosynthetic process	2.49E-03
55	GO:0010067: procambium histogenesis	2.49E-03
56	GO:2000033: regulation of seed dormancy process	2.49E-03
57	GO:1901259: chloroplast rRNA processing	2.49E-03
58	GO:0009082: branched-chain amino acid biosynthetic process	2.49E-03
59	GO:0051510: regulation of unidimensional cell growth	2.93E-03
60	GO:0006955: immune response	2.93E-03
61	GO:0009395: phospholipid catabolic process	2.93E-03
62	GO:0015995: chlorophyll biosynthetic process	3.09E-03
63	GO:0010411: xyloglucan metabolic process	3.09E-03
64	GO:0009451: RNA modification	3.32E-03
65	GO:0016559: peroxisome fission	3.40E-03
66	GO:0045292: mRNA cis splicing, via spliceosome	3.40E-03
67	GO:0006353: DNA-templated transcription, termination	3.40E-03
68	GO:0009817: defense response to fungus, incompatible interaction	3.42E-03
69	GO:0017004: cytochrome complex assembly	3.88E-03
70	GO:0010497: plasmodesmata-mediated intercellular transport	3.88E-03
71	GO:0009657: plastid organization	3.88E-03
72	GO:0009097: isoleucine biosynthetic process	3.88E-03
73	GO:0016051: carbohydrate biosynthetic process	4.33E-03
74	GO:0006754: ATP biosynthetic process	4.40E-03
75	GO:0000373: Group II intron splicing	4.40E-03
76	GO:0048589: developmental growth	4.40E-03
77	GO:0015780: nucleotide-sugar transport	4.40E-03
78	GO:0009098: leucine biosynthetic process	4.93E-03
79	GO:1900865: chloroplast RNA modification	4.93E-03
80	GO:0042761: very long-chain fatty acid biosynthetic process	4.93E-03
81	GO:0010162: seed dormancy process	5.48E-03
82	GO:0009658: chloroplast organization	5.61E-03
83	GO:0042546: cell wall biogenesis	5.79E-03
84	GO:0018119: peptidyl-cysteine S-nitrosylation	6.06E-03
85	GO:0030148: sphingolipid biosynthetic process	6.06E-03
86	GO:0046856: phosphatidylinositol dephosphorylation	6.06E-03
87	GO:0006820: anion transport	6.66E-03
88	GO:0016024: CDP-diacylglycerol biosynthetic process	6.66E-03
89	GO:0009664: plant-type cell wall organization	6.99E-03
90	GO:0009767: photosynthetic electron transport chain	7.28E-03
91	GO:0010223: secondary shoot formation	7.91E-03
92	GO:0009266: response to temperature stimulus	7.91E-03
93	GO:0010207: photosystem II assembly	7.91E-03
94	GO:0071732: cellular response to nitric oxide	8.57E-03
95	GO:0090351: seedling development	8.57E-03
96	GO:0010025: wax biosynthetic process	9.25E-03
97	GO:0045454: cell redox homeostasis	9.28E-03
98	GO:0019953: sexual reproduction	1.07E-02
99	GO:0031408: oxylipin biosynthetic process	1.14E-02
100	GO:0035428: hexose transmembrane transport	1.21E-02
101	GO:0071369: cellular response to ethylene stimulus	1.29E-02
102	GO:0001944: vasculature development	1.29E-02
103	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.29E-02
104	GO:0010089: xylem development	1.37E-02
105	GO:0010091: trichome branching	1.37E-02
106	GO:0016117: carotenoid biosynthetic process	1.45E-02
107	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.45E-02
108	GO:0000413: protein peptidyl-prolyl isomerization	1.53E-02
109	GO:0010087: phloem or xylem histogenesis	1.53E-02
110	GO:0042335: cuticle development	1.53E-02
111	GO:0010182: sugar mediated signaling pathway	1.62E-02
112	GO:0046323: glucose import	1.62E-02
113	GO:0019252: starch biosynthetic process	1.79E-02
114	GO:0071555: cell wall organization	1.82E-02
115	GO:0071281: cellular response to iron ion	2.06E-02
116	GO:0016125: sterol metabolic process	2.15E-02
117	GO:0010027: thylakoid membrane organization	2.44E-02
118	GO:0016126: sterol biosynthetic process	2.44E-02
119	GO:0009627: systemic acquired resistance	2.64E-02
120	GO:0009826: unidimensional cell growth	2.77E-02
121	GO:0016311: dephosphorylation	2.84E-02
122	GO:0018298: protein-chromophore linkage	2.95E-02
123	GO:0048767: root hair elongation	3.05E-02
124	GO:0009813: flavonoid biosynthetic process	3.05E-02
125	GO:0009407: toxin catabolic process	3.16E-02
126	GO:0048527: lateral root development	3.27E-02
127	GO:0005975: carbohydrate metabolic process	3.36E-02
128	GO:0030001: metal ion transport	3.83E-02
129	GO:0006631: fatty acid metabolic process	3.94E-02
130	GO:0015979: photosynthesis	4.06E-02
131	GO:0010114: response to red light	4.18E-02
132	GO:0051707: response to other organism	4.18E-02
133	GO:0008643: carbohydrate transport	4.41E-02
134	GO:0009636: response to toxic substance	4.54E-02
135	GO:0006812: cation transport	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
6	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
7	GO:0004496: mevalonate kinase activity	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
10	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.74E-06
11	GO:0016149: translation release factor activity, codon specific	1.47E-05
12	GO:0016788: hydrolase activity, acting on ester bonds	1.83E-04
13	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.91E-04
14	GO:0005227: calcium activated cation channel activity	1.91E-04
15	GO:0004560: alpha-L-fucosidase activity	1.91E-04
16	GO:0008184: glycogen phosphorylase activity	1.91E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.91E-04
18	GO:0042834: peptidoglycan binding	1.91E-04
19	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.91E-04
20	GO:0042586: peptide deformylase activity	1.91E-04
21	GO:0004645: phosphorylase activity	1.91E-04
22	GO:0047560: 3-dehydrosphinganine reductase activity	1.91E-04
23	GO:0003747: translation release factor activity	2.33E-04
24	GO:0004766: spermidine synthase activity	4.29E-04
25	GO:0008479: queuine tRNA-ribosyltransferase activity	4.29E-04
26	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	4.29E-04
27	GO:0004751: ribose-5-phosphate isomerase activity	6.99E-04
28	GO:0030267: glyoxylate reductase (NADP) activity	6.99E-04
29	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	6.99E-04
30	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	6.99E-04
31	GO:0016531: copper chaperone activity	6.99E-04
32	GO:0019829: cation-transporting ATPase activity	6.99E-04
33	GO:0003913: DNA photolyase activity	6.99E-04
34	GO:0005504: fatty acid binding	6.99E-04
35	GO:0052656: L-isoleucine transaminase activity	9.97E-04
36	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	9.97E-04
37	GO:0043023: ribosomal large subunit binding	9.97E-04
38	GO:0052654: L-leucine transaminase activity	9.97E-04
39	GO:0052655: L-valine transaminase activity	9.97E-04
40	GO:0001872: (1->3)-beta-D-glucan binding	9.97E-04
41	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.97E-04
42	GO:0004445: inositol-polyphosphate 5-phosphatase activity	9.97E-04
43	GO:0016851: magnesium chelatase activity	9.97E-04
44	GO:0016836: hydro-lyase activity	1.32E-03
45	GO:0052793: pectin acetylesterase activity	1.32E-03
46	GO:0004084: branched-chain-amino-acid transaminase activity	1.32E-03
47	GO:0045430: chalcone isomerase activity	1.32E-03
48	GO:0008381: mechanically-gated ion channel activity	1.68E-03
49	GO:0009922: fatty acid elongase activity	1.68E-03
50	GO:0003785: actin monomer binding	1.68E-03
51	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.83E-03
52	GO:0080030: methyl indole-3-acetate esterase activity	2.07E-03
53	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.07E-03
54	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.07E-03
55	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.07E-03
56	GO:0008237: metallopeptidase activity	2.34E-03
57	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.44E-03
58	GO:0051920: peroxiredoxin activity	2.49E-03
59	GO:0015631: tubulin binding	2.49E-03
60	GO:0004747: ribokinase activity	2.49E-03
61	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.49E-03
62	GO:0043295: glutathione binding	2.93E-03
63	GO:0004427: inorganic diphosphatase activity	2.93E-03
64	GO:0009881: photoreceptor activity	2.93E-03
65	GO:0004519: endonuclease activity	2.98E-03
66	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.09E-03
67	GO:0016209: antioxidant activity	3.40E-03
68	GO:0008865: fructokinase activity	3.40E-03
69	GO:0004222: metalloendopeptidase activity	3.77E-03
70	GO:0005375: copper ion transmembrane transporter activity	3.88E-03
71	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.40E-03
72	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.40E-03
73	GO:0047617: acyl-CoA hydrolase activity	4.93E-03
74	GO:0047372: acylglycerol lipase activity	6.06E-03
75	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.66E-03
76	GO:0004089: carbonate dehydratase activity	7.28E-03
77	GO:0009982: pseudouridine synthase activity	7.28E-03
78	GO:0004565: beta-galactosidase activity	7.28E-03
79	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.28E-03
80	GO:0052689: carboxylic ester hydrolase activity	8.38E-03
81	GO:0030599: pectinesterase activity	1.01E-02
82	GO:0043424: protein histidine kinase binding	1.07E-02
83	GO:0008324: cation transmembrane transporter activity	1.07E-02
84	GO:0004176: ATP-dependent peptidase activity	1.14E-02
85	GO:0033612: receptor serine/threonine kinase binding	1.14E-02
86	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.21E-02
87	GO:0019843: rRNA binding	1.34E-02
88	GO:0008514: organic anion transmembrane transporter activity	1.37E-02
89	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.38E-02
90	GO:0005102: receptor binding	1.45E-02
91	GO:0003713: transcription coactivator activity	1.62E-02
92	GO:0008080: N-acetyltransferase activity	1.62E-02
93	GO:0005355: glucose transmembrane transporter activity	1.70E-02
94	GO:0050662: coenzyme binding	1.70E-02
95	GO:0019901: protein kinase binding	1.79E-02
96	GO:0016887: ATPase activity	2.11E-02
97	GO:0005200: structural constituent of cytoskeleton	2.25E-02
98	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.25E-02
99	GO:0016491: oxidoreductase activity	2.73E-02
100	GO:0030247: polysaccharide binding	2.74E-02
101	GO:0008236: serine-type peptidase activity	2.84E-02
102	GO:0003746: translation elongation factor activity	3.49E-02
103	GO:0004497: monooxygenase activity	3.56E-02
104	GO:0003993: acid phosphatase activity	3.60E-02
105	GO:0051539: 4 iron, 4 sulfur cluster binding	3.83E-02
106	GO:0004364: glutathione transferase activity	4.06E-02
107	GO:0051537: 2 iron, 2 sulfur cluster binding	4.41E-02
108	GO:0043621: protein self-association	4.41E-02
109	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009507: chloroplast	6.38E-15
3	GO:0009570: chloroplast stroma	7.69E-10
4	GO:0009536: plastid	3.70E-06
5	GO:0009941: chloroplast envelope	7.44E-06
6	GO:0005618: cell wall	1.71E-05
7	GO:0046658: anchored component of plasma membrane	1.28E-04
8	GO:0009923: fatty acid elongase complex	1.91E-04
9	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.91E-04
10	GO:0031225: anchored component of membrane	1.97E-04
11	GO:0009543: chloroplast thylakoid lumen	3.28E-04
12	GO:0009579: thylakoid	4.97E-04
13	GO:0009505: plant-type cell wall	6.16E-04
14	GO:0031977: thylakoid lumen	6.48E-04
15	GO:0005853: eukaryotic translation elongation factor 1 complex	6.99E-04
16	GO:0010007: magnesium chelatase complex	6.99E-04
17	GO:0031969: chloroplast membrane	1.45E-03
18	GO:0009535: chloroplast thylakoid membrane	2.19E-03
19	GO:0009533: chloroplast stromal thylakoid	2.93E-03
20	GO:0005886: plasma membrane	5.77E-03
21	GO:0048046: apoplast	6.28E-03
22	GO:0000311: plastid large ribosomal subunit	6.66E-03
23	GO:0005938: cell cortex	7.28E-03
24	GO:0009534: chloroplast thylakoid	8.35E-03
25	GO:0043234: protein complex	9.25E-03
26	GO:0009706: chloroplast inner membrane	1.07E-02
27	GO:0015629: actin cytoskeleton	1.29E-02
28	GO:0043231: intracellular membrane-bounded organelle	1.37E-02
29	GO:0009506: plasmodesma	1.90E-02
30	GO:0009707: chloroplast outer membrane	2.95E-02
31	GO:0005856: cytoskeleton	4.54E-02