GO Enrichment Analysis of Co-expressed Genes with
AT3G44020
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 3 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 4 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 4.39E-06 |
| 6 | GO:0015979: photosynthesis | 9.51E-06 |
| 7 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.29E-05 |
| 8 | GO:0000413: protein peptidyl-prolyl isomerization | 4.28E-05 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.23E-04 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 1.23E-04 |
| 11 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.23E-04 |
| 12 | GO:0018026: peptidyl-lysine monomethylation | 2.86E-04 |
| 13 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.86E-04 |
| 14 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.86E-04 |
| 15 | GO:0046741: transport of virus in host, tissue to tissue | 2.86E-04 |
| 16 | GO:0080040: positive regulation of cellular response to phosphate starvation | 2.86E-04 |
| 17 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.86E-04 |
| 18 | GO:0010207: photosystem II assembly | 3.07E-04 |
| 19 | GO:0006000: fructose metabolic process | 4.72E-04 |
| 20 | GO:0090391: granum assembly | 4.72E-04 |
| 21 | GO:0046836: glycolipid transport | 6.76E-04 |
| 22 | GO:0009152: purine ribonucleotide biosynthetic process | 6.76E-04 |
| 23 | GO:0046653: tetrahydrofolate metabolic process | 6.76E-04 |
| 24 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.76E-04 |
| 25 | GO:0010037: response to carbon dioxide | 8.97E-04 |
| 26 | GO:0015976: carbon utilization | 8.97E-04 |
| 27 | GO:0009765: photosynthesis, light harvesting | 8.97E-04 |
| 28 | GO:2000122: negative regulation of stomatal complex development | 8.97E-04 |
| 29 | GO:0006546: glycine catabolic process | 8.97E-04 |
| 30 | GO:0031365: N-terminal protein amino acid modification | 1.13E-03 |
| 31 | GO:0016123: xanthophyll biosynthetic process | 1.13E-03 |
| 32 | GO:0016120: carotene biosynthetic process | 1.13E-03 |
| 33 | GO:0010190: cytochrome b6f complex assembly | 1.39E-03 |
| 34 | GO:0010555: response to mannitol | 1.66E-03 |
| 35 | GO:0071470: cellular response to osmotic stress | 1.66E-03 |
| 36 | GO:0015995: chlorophyll biosynthetic process | 1.70E-03 |
| 37 | GO:0018298: protein-chromophore linkage | 1.89E-03 |
| 38 | GO:0006400: tRNA modification | 1.95E-03 |
| 39 | GO:0010196: nonphotochemical quenching | 1.95E-03 |
| 40 | GO:0009704: de-etiolation | 2.26E-03 |
| 41 | GO:0048564: photosystem I assembly | 2.26E-03 |
| 42 | GO:0009642: response to light intensity | 2.26E-03 |
| 43 | GO:0009853: photorespiration | 2.38E-03 |
| 44 | GO:0017004: cytochrome complex assembly | 2.58E-03 |
| 45 | GO:0006002: fructose 6-phosphate metabolic process | 2.58E-03 |
| 46 | GO:0006783: heme biosynthetic process | 2.91E-03 |
| 47 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.91E-03 |
| 48 | GO:0010206: photosystem II repair | 2.91E-03 |
| 49 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.26E-03 |
| 50 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.62E-03 |
| 51 | GO:0006457: protein folding | 3.68E-03 |
| 52 | GO:0019684: photosynthesis, light reaction | 4.00E-03 |
| 53 | GO:0006006: glucose metabolic process | 4.79E-03 |
| 54 | GO:0006094: gluconeogenesis | 4.79E-03 |
| 55 | GO:0009767: photosynthetic electron transport chain | 4.79E-03 |
| 56 | GO:0005986: sucrose biosynthetic process | 4.79E-03 |
| 57 | GO:0010628: positive regulation of gene expression | 4.79E-03 |
| 58 | GO:0019253: reductive pentose-phosphate cycle | 5.20E-03 |
| 59 | GO:0010167: response to nitrate | 5.63E-03 |
| 60 | GO:0019344: cysteine biosynthetic process | 6.51E-03 |
| 61 | GO:0000027: ribosomal large subunit assembly | 6.51E-03 |
| 62 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.98E-03 |
| 63 | GO:0006012: galactose metabolic process | 8.43E-03 |
| 64 | GO:0016117: carotenoid biosynthetic process | 9.45E-03 |
| 65 | GO:0042335: cuticle development | 9.99E-03 |
| 66 | GO:0019252: starch biosynthetic process | 1.16E-02 |
| 67 | GO:0006508: proteolysis | 1.25E-02 |
| 68 | GO:0005975: carbohydrate metabolic process | 1.36E-02 |
| 69 | GO:0051607: defense response to virus | 1.52E-02 |
| 70 | GO:0010027: thylakoid membrane organization | 1.58E-02 |
| 71 | GO:0009615: response to virus | 1.58E-02 |
| 72 | GO:0042254: ribosome biogenesis | 1.59E-02 |
| 73 | GO:0042128: nitrate assimilation | 1.71E-02 |
| 74 | GO:0010411: xyloglucan metabolic process | 1.78E-02 |
| 75 | GO:0010218: response to far red light | 2.05E-02 |
| 76 | GO:0009407: toxin catabolic process | 2.05E-02 |
| 77 | GO:0010119: regulation of stomatal movement | 2.12E-02 |
| 78 | GO:0016051: carbohydrate biosynthetic process | 2.26E-02 |
| 79 | GO:0009637: response to blue light | 2.26E-02 |
| 80 | GO:0045454: cell redox homeostasis | 2.33E-02 |
| 81 | GO:0034599: cellular response to oxidative stress | 2.34E-02 |
| 82 | GO:0030001: metal ion transport | 2.48E-02 |
| 83 | GO:0010114: response to red light | 2.71E-02 |
| 84 | GO:0042546: cell wall biogenesis | 2.79E-02 |
| 85 | GO:0042742: defense response to bacterium | 2.82E-02 |
| 86 | GO:0009636: response to toxic substance | 2.95E-02 |
| 87 | GO:0006412: translation | 3.07E-02 |
| 88 | GO:0055114: oxidation-reduction process | 3.17E-02 |
| 89 | GO:0006486: protein glycosylation | 3.35E-02 |
| 90 | GO:0006417: regulation of translation | 3.60E-02 |
| 91 | GO:0006810: transport | 4.53E-02 |
| 92 | GO:0009735: response to cytokinin | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 2 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 3 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 6 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 7 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 6.84E-06 |
| 8 | GO:0051920: peroxiredoxin activity | 4.51E-05 |
| 9 | GO:0016209: antioxidant activity | 7.88E-05 |
| 10 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.23E-04 |
| 11 | GO:0008883: glutamyl-tRNA reductase activity | 2.86E-04 |
| 12 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.86E-04 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.07E-04 |
| 14 | GO:0043424: protein histidine kinase binding | 4.71E-04 |
| 15 | GO:0004751: ribose-5-phosphate isomerase activity | 4.72E-04 |
| 16 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.72E-04 |
| 17 | GO:0070402: NADPH binding | 4.72E-04 |
| 18 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.72E-04 |
| 19 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 6.76E-04 |
| 20 | GO:0017089: glycolipid transporter activity | 6.76E-04 |
| 21 | GO:0016851: magnesium chelatase activity | 6.76E-04 |
| 22 | GO:0016279: protein-lysine N-methyltransferase activity | 8.97E-04 |
| 23 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 8.97E-04 |
| 24 | GO:0051861: glycolipid binding | 8.97E-04 |
| 25 | GO:0043495: protein anchor | 8.97E-04 |
| 26 | GO:0019843: rRNA binding | 1.01E-03 |
| 27 | GO:0080030: methyl indole-3-acetate esterase activity | 1.39E-03 |
| 28 | GO:0042578: phosphoric ester hydrolase activity | 1.39E-03 |
| 29 | GO:0005509: calcium ion binding | 1.53E-03 |
| 30 | GO:0016168: chlorophyll binding | 1.53E-03 |
| 31 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.66E-03 |
| 32 | GO:0043295: glutathione binding | 1.95E-03 |
| 33 | GO:0008235: metalloexopeptidase activity | 1.95E-03 |
| 34 | GO:0019899: enzyme binding | 1.95E-03 |
| 35 | GO:0004034: aldose 1-epimerase activity | 2.26E-03 |
| 36 | GO:0004033: aldo-keto reductase (NADP) activity | 2.26E-03 |
| 37 | GO:0050661: NADP binding | 2.71E-03 |
| 38 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.71E-03 |
| 39 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.91E-03 |
| 40 | GO:0004177: aminopeptidase activity | 4.00E-03 |
| 41 | GO:0008378: galactosyltransferase activity | 4.39E-03 |
| 42 | GO:0004089: carbonate dehydratase activity | 4.79E-03 |
| 43 | GO:0031072: heat shock protein binding | 4.79E-03 |
| 44 | GO:0031409: pigment binding | 6.06E-03 |
| 45 | GO:0004176: ATP-dependent peptidase activity | 7.45E-03 |
| 46 | GO:0022891: substrate-specific transmembrane transporter activity | 8.43E-03 |
| 47 | GO:0003756: protein disulfide isomerase activity | 8.93E-03 |
| 48 | GO:0016853: isomerase activity | 1.11E-02 |
| 49 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.22E-02 |
| 50 | GO:0008237: metallopeptidase activity | 1.46E-02 |
| 51 | GO:0004601: peroxidase activity | 1.56E-02 |
| 52 | GO:0030246: carbohydrate binding | 1.69E-02 |
| 53 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.78E-02 |
| 54 | GO:0008236: serine-type peptidase activity | 1.85E-02 |
| 55 | GO:0003735: structural constituent of ribosome | 2.04E-02 |
| 56 | GO:0004222: metalloendopeptidase activity | 2.05E-02 |
| 57 | GO:0004364: glutathione transferase activity | 2.63E-02 |
| 58 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.87E-02 |
| 59 | GO:0043621: protein self-association | 2.87E-02 |
| 60 | GO:0009055: electron carrier activity | 3.08E-02 |
| 61 | GO:0005515: protein binding | 3.36E-02 |
| 62 | GO:0003690: double-stranded DNA binding | 3.44E-02 |
| 63 | GO:0016491: oxidoreductase activity | 3.97E-02 |
| 64 | GO:0051082: unfolded protein binding | 4.31E-02 |
| 65 | GO:0046872: metal ion binding | 4.76E-02 |
| 66 | GO:0016758: transferase activity, transferring hexosyl groups | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.58E-31 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 4.20E-27 |
| 3 | GO:0009543: chloroplast thylakoid lumen | 5.95E-17 |
| 4 | GO:0009579: thylakoid | 1.67E-15 |
| 5 | GO:0031977: thylakoid lumen | 8.22E-14 |
| 6 | GO:0009570: chloroplast stroma | 3.33E-13 |
| 7 | GO:0009534: chloroplast thylakoid | 4.36E-10 |
| 8 | GO:0009654: photosystem II oxygen evolving complex | 3.43E-09 |
| 9 | GO:0019898: extrinsic component of membrane | 2.92E-08 |
| 10 | GO:0009941: chloroplast envelope | 2.53E-07 |
| 11 | GO:0005960: glycine cleavage complex | 6.84E-06 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 6.07E-05 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.22E-04 |
| 14 | GO:0009515: granal stacked thylakoid | 1.23E-04 |
| 15 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.23E-04 |
| 16 | GO:0030095: chloroplast photosystem II | 3.07E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 4.72E-04 |
| 18 | GO:0048046: apoplast | 1.64E-03 |
| 19 | GO:0031969: chloroplast membrane | 3.41E-03 |
| 20 | GO:0030076: light-harvesting complex | 5.63E-03 |
| 21 | GO:0009706: chloroplast inner membrane | 5.83E-03 |
| 22 | GO:0043234: protein complex | 6.06E-03 |
| 23 | GO:0010287: plastoglobule | 6.91E-03 |
| 24 | GO:0042651: thylakoid membrane | 6.98E-03 |
| 25 | GO:0005840: ribosome | 7.78E-03 |
| 26 | GO:0016021: integral component of membrane | 9.80E-03 |
| 27 | GO:0009522: photosystem I | 1.11E-02 |
| 28 | GO:0009523: photosystem II | 1.16E-02 |
| 29 | GO:0010319: stromule | 1.46E-02 |
| 30 | GO:0031225: anchored component of membrane | 2.04E-02 |
| 31 | GO:0022626: cytosolic ribosome | 4.84E-02 |