co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G43540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:0016120: carotene biosynthetic process	1.98E-06
3	GO:1902025: nitrate import	3.00E-05
4	GO:0090548: response to nitrate starvation	3.00E-05
5	GO:0034757: negative regulation of iron ion transport	3.00E-05
6	GO:0015936: coenzyme A metabolic process	3.00E-05
7	GO:0080005: photosystem stoichiometry adjustment	7.58E-05
8	GO:0010271: regulation of chlorophyll catabolic process	7.58E-05
9	GO:0042939: tripeptide transport	7.58E-05
10	GO:1904143: positive regulation of carotenoid biosynthetic process	7.58E-05
11	GO:0006421: asparaginyl-tRNA aminoacylation	1.32E-04
12	GO:0080117: secondary growth	1.32E-04
13	GO:2001295: malonyl-CoA biosynthetic process	1.32E-04
14	GO:0031936: negative regulation of chromatin silencing	1.97E-04
15	GO:0051639: actin filament network formation	1.97E-04
16	GO:0016126: sterol biosynthetic process	2.41E-04
17	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.67E-04
18	GO:0042938: dipeptide transport	2.67E-04
19	GO:0051781: positive regulation of cell division	2.67E-04
20	GO:0051764: actin crosslink formation	2.67E-04
21	GO:0048831: regulation of shoot system development	4.20E-04
22	GO:0048509: regulation of meristem development	5.02E-04
23	GO:0080111: DNA demethylation	5.88E-04
24	GO:0030497: fatty acid elongation	5.88E-04
25	GO:0050821: protein stabilization	6.76E-04
26	GO:0009827: plant-type cell wall modification	7.68E-04
27	GO:0034765: regulation of ion transmembrane transport	8.63E-04
28	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	9.61E-04
29	GO:0010072: primary shoot apical meristem specification	1.16E-03
30	GO:0005983: starch catabolic process	1.27E-03
31	GO:0071365: cellular response to auxin stimulus	1.27E-03
32	GO:0006807: nitrogen compound metabolic process	1.38E-03
33	GO:0018107: peptidyl-threonine phosphorylation	1.38E-03
34	GO:0009933: meristem structural organization	1.50E-03
35	GO:0006833: water transport	1.73E-03
36	GO:0007166: cell surface receptor signaling pathway	1.83E-03
37	GO:0051017: actin filament bundle assembly	1.86E-03
38	GO:0006289: nucleotide-excision repair	1.86E-03
39	GO:0008299: isoprenoid biosynthetic process	1.98E-03
40	GO:0006306: DNA methylation	2.11E-03
41	GO:0071215: cellular response to abscisic acid stimulus	2.38E-03
42	GO:0006284: base-excision repair	2.52E-03
43	GO:0070417: cellular response to cold	2.66E-03
44	GO:0016117: carotenoid biosynthetic process	2.66E-03
45	GO:0042391: regulation of membrane potential	2.80E-03
46	GO:0034220: ion transmembrane transport	2.80E-03
47	GO:0010051: xylem and phloem pattern formation	2.80E-03
48	GO:0010087: phloem or xylem histogenesis	2.80E-03
49	GO:0045489: pectin biosynthetic process	2.94E-03
50	GO:0006342: chromatin silencing	2.94E-03
51	GO:0019252: starch biosynthetic process	3.24E-03
52	GO:0071805: potassium ion transmembrane transport	4.03E-03
53	GO:0010029: regulation of seed germination	4.53E-03
54	GO:0048481: plant ovule development	5.23E-03
55	GO:0030244: cellulose biosynthetic process	5.23E-03
56	GO:0010311: lateral root formation	5.41E-03
57	GO:0000160: phosphorelay signal transduction system	5.41E-03
58	GO:0009834: plant-type secondary cell wall biogenesis	5.60E-03
59	GO:0009631: cold acclimation	5.78E-03
60	GO:0009636: response to toxic substance	7.96E-03
61	GO:0009736: cytokinin-activated signaling pathway	9.03E-03
62	GO:0006857: oligopeptide transport	9.47E-03
63	GO:0009909: regulation of flower development	9.70E-03
64	GO:0055085: transmembrane transport	1.00E-02
65	GO:0048367: shoot system development	1.04E-02
66	GO:0018105: peptidyl-serine phosphorylation	1.18E-02
67	GO:0009414: response to water deprivation	1.57E-02
68	GO:0007623: circadian rhythm	1.70E-02
69	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.85E-02
70	GO:0010468: regulation of gene expression	1.93E-02
71	GO:0005975: carbohydrate metabolic process	2.44E-02
72	GO:0006970: response to osmotic stress	2.45E-02
73	GO:0046777: protein autophosphorylation	2.84E-02
74	GO:0006869: lipid transport	3.29E-02
75	GO:0009737: response to abscisic acid	3.43E-02
76	GO:0006468: protein phosphorylation	3.52E-02
77	GO:0006281: DNA repair	3.58E-02
78	GO:0048364: root development	3.69E-02
79	GO:0009753: response to jasmonic acid	3.76E-02
80	GO:0009734: auxin-activated signaling pathway	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0004438: phosphatidylinositol-3-phosphatase activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0017046: peptide hormone binding	0.00E+00
5	GO:0051060: pullulanase activity	0.00E+00
6	GO:0052629: phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity	0.00E+00
7	GO:0004163: diphosphomevalonate decarboxylase activity	3.00E-05
8	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	3.00E-05
9	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	3.00E-05
10	GO:0009884: cytokinin receptor activity	7.58E-05
11	GO:0019172: glyoxalase III activity	7.58E-05
12	GO:0042937: tripeptide transporter activity	7.58E-05
13	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.32E-04
14	GO:0004816: asparagine-tRNA ligase activity	1.32E-04
15	GO:0004075: biotin carboxylase activity	1.32E-04
16	GO:0005034: osmosensor activity	1.32E-04
17	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.32E-04
18	GO:0004506: squalene monooxygenase activity	2.67E-04
19	GO:0070628: proteasome binding	2.67E-04
20	GO:0042277: peptide binding	2.67E-04
21	GO:0042936: dipeptide transporter activity	2.67E-04
22	GO:0019104: DNA N-glycosylase activity	2.67E-04
23	GO:0003989: acetyl-CoA carboxylase activity	3.42E-04
24	GO:0031593: polyubiquitin binding	4.20E-04
25	GO:0004556: alpha-amylase activity	4.20E-04
26	GO:0004462: lactoylglutathione lyase activity	4.20E-04
27	GO:0019900: kinase binding	5.02E-04
28	GO:0005242: inward rectifier potassium channel activity	5.02E-04
29	GO:0004673: protein histidine kinase activity	1.06E-03
30	GO:0000155: phosphorelay sensor kinase activity	1.38E-03
31	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.50E-03
32	GO:0043130: ubiquitin binding	1.86E-03
33	GO:0043424: protein histidine kinase binding	1.98E-03
34	GO:0042802: identical protein binding	2.03E-03
35	GO:0030551: cyclic nucleotide binding	2.80E-03
36	GO:0005249: voltage-gated potassium channel activity	2.80E-03
37	GO:0019901: protein kinase binding	3.24E-03
38	GO:0004518: nuclease activity	3.55E-03
39	GO:0051015: actin filament binding	3.71E-03
40	GO:0003684: damaged DNA binding	3.87E-03
41	GO:0008483: transaminase activity	4.03E-03
42	GO:0016413: O-acetyltransferase activity	4.20E-03
43	GO:0015250: water channel activity	4.36E-03
44	GO:0003746: translation elongation factor activity	6.16E-03
45	GO:0005515: protein binding	6.36E-03
46	GO:0051539: 4 iron, 4 sulfur cluster binding	6.74E-03
47	GO:0050661: NADP binding	6.74E-03
48	GO:0005524: ATP binding	8.40E-03
49	GO:0003779: actin binding	1.13E-02
50	GO:0003677: DNA binding	1.25E-02
51	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.38E-02
52	GO:0005215: transporter activity	1.78E-02
53	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.02E-02
54	GO:0004672: protein kinase activity	2.36E-02
55	GO:0050660: flavin adenine dinucleotide binding	2.58E-02
56	GO:0008289: lipid binding	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009509: chromoplast	1.32E-04
2	GO:0032432: actin filament bundle	1.97E-04
3	GO:0005884: actin filament	1.16E-03
4	GO:0005886: plasma membrane	2.16E-03
5	GO:0031969: chloroplast membrane	3.04E-03
6	GO:0005789: endoplasmic reticulum membrane	4.54E-03
7	GO:0019005: SCF ubiquitin ligase complex	5.23E-03
8	GO:0005887: integral component of plasma membrane	6.06E-03
9	GO:0009570: chloroplast stroma	7.24E-03
10	GO:0009507: chloroplast	9.71E-03
11	GO:0005759: mitochondrial matrix	1.59E-02
12	GO:0009941: chloroplast envelope	1.89E-02