co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G43520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046292: formaldehyde metabolic process	0.00E+00
2	GO:0043201: response to leucine	0.00E+00
3	GO:0080053: response to phenylalanine	0.00E+00
4	GO:0002376: immune system process	0.00E+00
5	GO:0010360: negative regulation of anion channel activity	0.00E+00
6	GO:0030149: sphingolipid catabolic process	0.00E+00
7	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
8	GO:0080052: response to histidine	0.00E+00
9	GO:0006983: ER overload response	0.00E+00
10	GO:0006069: ethanol oxidation	0.00E+00
11	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
12	GO:0006592: ornithine biosynthetic process	0.00E+00
13	GO:0006099: tricarboxylic acid cycle	4.59E-12
14	GO:0045454: cell redox homeostasis	9.13E-09
15	GO:0046686: response to cadmium ion	1.98E-08
16	GO:0006102: isocitrate metabolic process	4.61E-08
17	GO:0034976: response to endoplasmic reticulum stress	1.76E-06
18	GO:0006101: citrate metabolic process	2.91E-06
19	GO:0042742: defense response to bacterium	8.40E-06
20	GO:0006457: protein folding	6.65E-05
21	GO:0006465: signal peptide processing	6.89E-05
22	GO:0009697: salicylic acid biosynthetic process	6.89E-05
23	GO:0006564: L-serine biosynthetic process	6.89E-05
24	GO:0006097: glyoxylate cycle	6.89E-05
25	GO:0007292: female gamete generation	2.51E-04
26	GO:0051938: L-glutamate import	2.51E-04
27	GO:0015760: glucose-6-phosphate transport	2.51E-04
28	GO:1990641: response to iron ion starvation	2.51E-04
29	GO:1901183: positive regulation of camalexin biosynthetic process	2.51E-04
30	GO:0006007: glucose catabolic process	2.51E-04
31	GO:1902361: mitochondrial pyruvate transmembrane transport	2.51E-04
32	GO:0043266: regulation of potassium ion transport	2.51E-04
33	GO:0019673: GDP-mannose metabolic process	2.51E-04
34	GO:0046244: salicylic acid catabolic process	2.51E-04
35	GO:0034975: protein folding in endoplasmic reticulum	2.51E-04
36	GO:0035266: meristem growth	2.51E-04
37	GO:0051262: protein tetramerization	5.53E-04
38	GO:0043066: negative regulation of apoptotic process	5.53E-04
39	GO:0006850: mitochondrial pyruvate transport	5.53E-04
40	GO:0019752: carboxylic acid metabolic process	5.53E-04
41	GO:0051788: response to misfolded protein	5.53E-04
42	GO:0042939: tripeptide transport	5.53E-04
43	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.53E-04
44	GO:0007154: cell communication	5.53E-04
45	GO:0015712: hexose phosphate transport	5.53E-04
46	GO:0043091: L-arginine import	5.53E-04
47	GO:0010043: response to zinc ion	7.57E-04
48	GO:0045039: protein import into mitochondrial inner membrane	8.99E-04
49	GO:0060968: regulation of gene silencing	8.99E-04
50	GO:0015714: phosphoenolpyruvate transport	8.99E-04
51	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	8.99E-04
52	GO:0035436: triose phosphate transmembrane transport	8.99E-04
53	GO:0090351: seedling development	9.03E-04
54	GO:0006979: response to oxidative stress	9.11E-04
55	GO:0000162: tryptophan biosynthetic process	1.00E-03
56	GO:0002239: response to oomycetes	1.28E-03
57	GO:0072334: UDP-galactose transmembrane transport	1.28E-03
58	GO:0033014: tetrapyrrole biosynthetic process	1.28E-03
59	GO:0006511: ubiquitin-dependent protein catabolic process	1.40E-03
60	GO:0031348: negative regulation of defense response	1.46E-03
61	GO:0051365: cellular response to potassium ion starvation	1.71E-03
62	GO:0010387: COP9 signalosome assembly	1.71E-03
63	GO:1902584: positive regulation of response to water deprivation	1.71E-03
64	GO:0051205: protein insertion into membrane	1.71E-03
65	GO:0015713: phosphoglycerate transport	1.71E-03
66	GO:0042938: dipeptide transport	1.71E-03
67	GO:0070534: protein K63-linked ubiquitination	1.71E-03
68	GO:0010109: regulation of photosynthesis	1.71E-03
69	GO:0010118: stomatal movement	2.02E-03
70	GO:0006096: glycolytic process	2.09E-03
71	GO:0000304: response to singlet oxygen	2.19E-03
72	GO:0045927: positive regulation of growth	2.19E-03
73	GO:0046283: anthocyanin-containing compound metabolic process	2.19E-03
74	GO:0006461: protein complex assembly	2.19E-03
75	GO:0019252: starch biosynthetic process	2.51E-03
76	GO:0000302: response to reactive oxygen species	2.68E-03
77	GO:0048232: male gamete generation	2.70E-03
78	GO:0043248: proteasome assembly	2.70E-03
79	GO:0007035: vacuolar acidification	2.70E-03
80	GO:0035435: phosphate ion transmembrane transport	2.70E-03
81	GO:0009643: photosynthetic acclimation	2.70E-03
82	GO:0006014: D-ribose metabolic process	2.70E-03
83	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.70E-03
84	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.70E-03
85	GO:0006301: postreplication repair	2.70E-03
86	GO:0048827: phyllome development	2.70E-03
87	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.70E-03
88	GO:0015977: carbon fixation	3.24E-03
89	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.24E-03
90	GO:0042372: phylloquinone biosynthetic process	3.24E-03
91	GO:0034389: lipid particle organization	3.24E-03
92	GO:0098655: cation transmembrane transport	3.24E-03
93	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.24E-03
94	GO:0010555: response to mannitol	3.24E-03
95	GO:0080186: developmental vegetative growth	3.82E-03
96	GO:0000338: protein deneddylation	3.82E-03
97	GO:0009627: systemic acquired resistance	4.32E-03
98	GO:0030091: protein repair	4.44E-03
99	GO:0005978: glycogen biosynthetic process	4.44E-03
100	GO:0006605: protein targeting	4.44E-03
101	GO:0010078: maintenance of root meristem identity	4.44E-03
102	GO:0006875: cellular metal ion homeostasis	4.44E-03
103	GO:2000070: regulation of response to water deprivation	4.44E-03
104	GO:0055075: potassium ion homeostasis	4.44E-03
105	GO:0009751: response to salicylic acid	4.66E-03
106	GO:0008219: cell death	5.04E-03
107	GO:0010120: camalexin biosynthetic process	5.08E-03
108	GO:0006526: arginine biosynthetic process	5.08E-03
109	GO:0010204: defense response signaling pathway, resistance gene-independent	5.08E-03
110	GO:0030968: endoplasmic reticulum unfolded protein response	5.08E-03
111	GO:0006499: N-terminal protein myristoylation	5.56E-03
112	GO:0046916: cellular transition metal ion homeostasis	5.75E-03
113	GO:0006783: heme biosynthetic process	5.75E-03
114	GO:0045087: innate immune response	6.39E-03
115	GO:0010205: photoinhibition	6.46E-03
116	GO:0043067: regulation of programmed cell death	6.46E-03
117	GO:0071577: zinc II ion transmembrane transport	6.46E-03
118	GO:0009617: response to bacterium	6.64E-03
119	GO:0043069: negative regulation of programmed cell death	7.20E-03
120	GO:0048829: root cap development	7.20E-03
121	GO:0010015: root morphogenesis	7.96E-03
122	GO:0000038: very long-chain fatty acid metabolic process	7.96E-03
123	GO:0009807: lignan biosynthetic process	7.96E-03
124	GO:0006790: sulfur compound metabolic process	8.75E-03
125	GO:0016925: protein sumoylation	8.75E-03
126	GO:0018107: peptidyl-threonine phosphorylation	9.57E-03
127	GO:0009933: meristem structural organization	1.04E-02
128	GO:0006486: protein glycosylation	1.11E-02
129	GO:0010039: response to iron ion	1.13E-02
130	GO:0046854: phosphatidylinositol phosphorylation	1.13E-02
131	GO:0010053: root epidermal cell differentiation	1.13E-02
132	GO:0006071: glycerol metabolic process	1.22E-02
133	GO:0009651: response to salt stress	1.23E-02
134	GO:0006487: protein N-linked glycosylation	1.31E-02
135	GO:0048316: seed development	1.36E-02
136	GO:0009695: jasmonic acid biosynthetic process	1.41E-02
137	GO:0006825: copper ion transport	1.41E-02
138	GO:0006952: defense response	1.47E-02
139	GO:0031408: oxylipin biosynthetic process	1.50E-02
140	GO:0003333: amino acid transmembrane transport	1.50E-02
141	GO:0016998: cell wall macromolecule catabolic process	1.50E-02
142	GO:0009624: response to nematode	1.59E-02
143	GO:0030433: ubiquitin-dependent ERAD pathway	1.60E-02
144	GO:0019748: secondary metabolic process	1.60E-02
145	GO:0006012: galactose metabolic process	1.71E-02
146	GO:0019722: calcium-mediated signaling	1.81E-02
147	GO:0032259: methylation	1.89E-02
148	GO:0000413: protein peptidyl-prolyl isomerization	2.02E-02
149	GO:0006520: cellular amino acid metabolic process	2.14E-02
150	GO:0006662: glycerol ether metabolic process	2.14E-02
151	GO:0048868: pollen tube development	2.14E-02
152	GO:0009749: response to glucose	2.36E-02
153	GO:0002229: defense response to oomycetes	2.48E-02
154	GO:0007264: small GTPase mediated signal transduction	2.60E-02
155	GO:0010150: leaf senescence	2.75E-02
156	GO:0009567: double fertilization forming a zygote and endosperm	2.85E-02
157	GO:0010252: auxin homeostasis	2.85E-02
158	GO:0006464: cellular protein modification process	2.85E-02
159	GO:0055114: oxidation-reduction process	2.93E-02
160	GO:0010286: heat acclimation	2.97E-02
161	GO:0006468: protein phosphorylation	3.09E-02
162	GO:0009615: response to virus	3.23E-02
163	GO:0009607: response to biotic stimulus	3.36E-02
164	GO:0015995: chlorophyll biosynthetic process	3.62E-02
165	GO:0009735: response to cytokinin	3.65E-02
166	GO:0016311: dephosphorylation	3.76E-02
167	GO:0010311: lateral root formation	4.04E-02
168	GO:0009555: pollen development	4.07E-02
169	GO:0009611: response to wounding	4.18E-02
170	GO:0009407: toxin catabolic process	4.18E-02
171	GO:0009853: photorespiration	4.61E-02
172	GO:0016051: carbohydrate biosynthetic process	4.61E-02
173	GO:0034599: cellular response to oxidative stress	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
4	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
5	GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity	0.00E+00
6	GO:0008777: acetylornithine deacetylase activity	0.00E+00
7	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
8	GO:0003756: protein disulfide isomerase activity	1.49E-07
9	GO:0003994: aconitate hydratase activity	2.91E-06
10	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.38E-05
11	GO:0005509: calcium ion binding	3.88E-05
12	GO:0015035: protein disulfide oxidoreductase activity	5.31E-05
13	GO:0008233: peptidase activity	9.03E-05
14	GO:0004298: threonine-type endopeptidase activity	1.00E-04
15	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.51E-04
16	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.51E-04
17	GO:0008446: GDP-mannose 4,6-dehydratase activity	2.51E-04
18	GO:0004048: anthranilate phosphoribosyltransferase activity	2.51E-04
19	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.51E-04
20	GO:0004321: fatty-acyl-CoA synthase activity	2.51E-04
21	GO:0008909: isochorismate synthase activity	2.51E-04
22	GO:0004325: ferrochelatase activity	2.51E-04
23	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.51E-04
24	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.51E-04
25	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.51E-04
26	GO:0005507: copper ion binding	4.08E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	5.53E-04
28	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	5.53E-04
29	GO:0015152: glucose-6-phosphate transmembrane transporter activity	5.53E-04
30	GO:0018708: thiol S-methyltransferase activity	5.53E-04
31	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.53E-04
32	GO:0019172: glyoxalase III activity	5.53E-04
33	GO:0004338: glucan exo-1,3-beta-glucosidase activity	5.53E-04
34	GO:0015036: disulfide oxidoreductase activity	5.53E-04
35	GO:0042937: tripeptide transporter activity	5.53E-04
36	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.53E-04
37	GO:0004129: cytochrome-c oxidase activity	5.54E-04
38	GO:0004022: alcohol dehydrogenase (NAD) activity	7.18E-04
39	GO:0005315: inorganic phosphate transmembrane transporter activity	7.18E-04
40	GO:0008430: selenium binding	8.99E-04
41	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.99E-04
42	GO:0050833: pyruvate transmembrane transporter activity	8.99E-04
43	GO:0008964: phosphoenolpyruvate carboxylase activity	8.99E-04
44	GO:0071917: triose-phosphate transmembrane transporter activity	8.99E-04
45	GO:0000030: mannosyltransferase activity	8.99E-04
46	GO:0051539: 4 iron, 4 sulfur cluster binding	9.98E-04
47	GO:0009055: electron carrier activity	1.23E-03
48	GO:0015189: L-lysine transmembrane transporter activity	1.28E-03
49	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.28E-03
50	GO:0004108: citrate (Si)-synthase activity	1.28E-03
51	GO:0015181: arginine transmembrane transporter activity	1.28E-03
52	GO:0042936: dipeptide transporter activity	1.71E-03
53	GO:0005313: L-glutamate transmembrane transporter activity	1.71E-03
54	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.71E-03
55	GO:0016004: phospholipase activator activity	1.71E-03
56	GO:0010279: indole-3-acetic acid amido synthetase activity	1.71E-03
57	GO:0015120: phosphoglycerate transmembrane transporter activity	1.71E-03
58	GO:0005459: UDP-galactose transmembrane transporter activity	2.19E-03
59	GO:0005452: inorganic anion exchanger activity	2.19E-03
60	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.19E-03
61	GO:0000104: succinate dehydrogenase activity	2.19E-03
62	GO:0005496: steroid binding	2.19E-03
63	GO:0015301: anion:anion antiporter activity	2.19E-03
64	GO:0005524: ATP binding	2.26E-03
65	GO:0016853: isomerase activity	2.34E-03
66	GO:0051082: unfolded protein binding	2.65E-03
67	GO:0036402: proteasome-activating ATPase activity	2.70E-03
68	GO:0016746: transferase activity, transferring acyl groups	2.75E-03
69	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.05E-03
70	GO:0051920: peroxiredoxin activity	3.24E-03
71	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.24E-03
72	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.24E-03
73	GO:0004747: ribokinase activity	3.24E-03
74	GO:0004602: glutathione peroxidase activity	3.24E-03
75	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.24E-03
76	GO:0016831: carboxy-lyase activity	3.82E-03
77	GO:0008320: protein transmembrane transporter activity	3.82E-03
78	GO:0043295: glutathione binding	3.82E-03
79	GO:0004674: protein serine/threonine kinase activity	4.40E-03
80	GO:0004034: aldose 1-epimerase activity	4.44E-03
81	GO:0008865: fructokinase activity	4.44E-03
82	GO:0016209: antioxidant activity	4.44E-03
83	GO:0030247: polysaccharide binding	4.55E-03
84	GO:0046914: transition metal ion binding	5.08E-03
85	GO:0016207: 4-coumarate-CoA ligase activity	5.75E-03
86	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.75E-03
87	GO:0004743: pyruvate kinase activity	6.46E-03
88	GO:0015174: basic amino acid transmembrane transporter activity	6.46E-03
89	GO:0030955: potassium ion binding	6.46E-03
90	GO:0008171: O-methyltransferase activity	7.20E-03
91	GO:0046961: proton-transporting ATPase activity, rotational mechanism	7.96E-03
92	GO:0008794: arsenate reductase (glutaredoxin) activity	7.96E-03
93	GO:0016887: ATPase activity	9.26E-03
94	GO:0009982: pseudouridine synthase activity	9.57E-03
95	GO:0051287: NAD binding	9.99E-03
96	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.04E-02
97	GO:0017025: TBP-class protein binding	1.13E-02
98	GO:0004190: aspartic-type endopeptidase activity	1.13E-02
99	GO:0005385: zinc ion transmembrane transporter activity	1.31E-02
100	GO:0051536: iron-sulfur cluster binding	1.31E-02
101	GO:0008324: cation transmembrane transporter activity	1.41E-02
102	GO:0008810: cellulase activity	1.71E-02
103	GO:0047134: protein-disulfide reductase activity	1.92E-02
104	GO:0016301: kinase activity	2.10E-02
105	GO:0046873: metal ion transmembrane transporter activity	2.14E-02
106	GO:0004791: thioredoxin-disulfide reductase activity	2.25E-02
107	GO:0048038: quinone binding	2.48E-02
108	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.48E-02
109	GO:0015297: antiporter activity	2.63E-02
110	GO:0008483: transaminase activity	2.97E-02
111	GO:0008237: metallopeptidase activity	2.97E-02
112	GO:0016597: amino acid binding	3.10E-02
113	GO:0051213: dioxygenase activity	3.23E-02
114	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.76E-02
115	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.90E-02
116	GO:0015238: drug transmembrane transporter activity	4.04E-02
117	GO:0008168: methyltransferase activity	4.09E-02
118	GO:0000287: magnesium ion binding	4.16E-02
119	GO:0004222: metalloendopeptidase activity	4.18E-02
120	GO:0030145: manganese ion binding	4.32E-02
121	GO:0003746: translation elongation factor activity	4.61E-02
122	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005783: endoplasmic reticulum	2.91E-14
3	GO:0005788: endoplasmic reticulum lumen	1.69E-06
4	GO:0009507: chloroplast	9.43E-06
5	GO:0031090: organelle membrane	1.02E-05
6	GO:0005886: plasma membrane	3.21E-05
7	GO:0005839: proteasome core complex	1.00E-04
8	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.32E-04
9	GO:0000502: proteasome complex	2.41E-04
10	GO:0045252: oxoglutarate dehydrogenase complex	2.51E-04
11	GO:0005787: signal peptidase complex	2.51E-04
12	GO:0005773: vacuole	2.78E-04
13	GO:0019773: proteasome core complex, alpha-subunit complex	2.86E-04
14	GO:0045254: pyruvate dehydrogenase complex	5.53E-04
15	GO:0031314: extrinsic component of mitochondrial inner membrane	5.53E-04
16	GO:0030134: ER to Golgi transport vesicle	5.53E-04
17	GO:0005774: vacuolar membrane	6.32E-04
18	GO:0005789: endoplasmic reticulum membrane	7.04E-04
19	GO:0005751: mitochondrial respiratory chain complex IV	8.99E-04
20	GO:0005739: mitochondrion	1.38E-03
21	GO:0031372: UBC13-MMS2 complex	1.71E-03
22	GO:0030660: Golgi-associated vesicle membrane	1.71E-03
23	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.71E-03
24	GO:0005746: mitochondrial respiratory chain	2.19E-03
25	GO:0008250: oligosaccharyltransferase complex	2.19E-03
26	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.19E-03
27	GO:0005798: Golgi-associated vesicle	2.70E-03
28	GO:0030173: integral component of Golgi membrane	3.24E-03
29	GO:0005801: cis-Golgi network	3.24E-03
30	GO:0031597: cytosolic proteasome complex	3.24E-03
31	GO:0031595: nuclear proteasome complex	3.82E-03
32	GO:0016021: integral component of membrane	3.84E-03
33	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.44E-03
34	GO:0031305: integral component of mitochondrial inner membrane	4.44E-03
35	GO:0045273: respiratory chain complex II	4.44E-03
36	GO:0009536: plastid	4.60E-03
37	GO:0005759: mitochondrial matrix	4.70E-03
38	GO:0005811: lipid particle	5.08E-03
39	GO:0000326: protein storage vacuole	5.08E-03
40	GO:0048046: apoplast	5.54E-03
41	GO:0008180: COP9 signalosome	5.75E-03
42	GO:0005829: cytosol	6.17E-03
43	GO:0008540: proteasome regulatory particle, base subcomplex	6.46E-03
44	GO:0005618: cell wall	6.77E-03
45	GO:0005765: lysosomal membrane	7.96E-03
46	GO:0030176: integral component of endoplasmic reticulum membrane	1.13E-02
47	GO:0031969: chloroplast membrane	1.22E-02
48	GO:0005747: mitochondrial respiratory chain complex I	1.36E-02
49	GO:0005777: peroxisome	1.40E-02
50	GO:0045271: respiratory chain complex I	1.41E-02
51	GO:0009505: plant-type cell wall	1.52E-02
52	GO:0005623: cell	2.05E-02
53	GO:0009570: chloroplast stroma	2.15E-02
54	GO:0000785: chromatin	2.60E-02
55	GO:0005778: peroxisomal membrane	2.97E-02
56	GO:0046658: anchored component of plasma membrane	3.64E-02