co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010398: xylogalacturonan metabolic process	0.00E+00
2	GO:0006592: ornithine biosynthetic process	0.00E+00
3	GO:1902001: fatty acid transmembrane transport	0.00E+00
4	GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.00E+00
5	GO:0042891: antibiotic transport	0.00E+00
6	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
7	GO:0043201: response to leucine	0.00E+00
8	GO:0045792: negative regulation of cell size	0.00E+00
9	GO:0080053: response to phenylalanine	0.00E+00
10	GO:0002376: immune system process	0.00E+00
11	GO:0030149: sphingolipid catabolic process	0.00E+00
12	GO:0080052: response to histidine	0.00E+00
13	GO:0006983: ER overload response	0.00E+00
14	GO:0052544: defense response by callose deposition in cell wall	3.27E-07
15	GO:0000162: tryptophan biosynthetic process	1.42E-06
16	GO:0009627: systemic acquired resistance	1.51E-06
17	GO:0031349: positive regulation of defense response	2.56E-06
18	GO:0046686: response to cadmium ion	5.55E-06
19	GO:0006952: defense response	1.64E-05
20	GO:1902584: positive regulation of response to water deprivation	3.85E-05
21	GO:0006564: L-serine biosynthetic process	6.16E-05
22	GO:0006014: D-ribose metabolic process	9.03E-05
23	GO:0009759: indole glucosinolate biosynthetic process	9.03E-05
24	GO:0055114: oxidation-reduction process	1.00E-04
25	GO:0009625: response to insect	1.13E-04
26	GO:0045454: cell redox homeostasis	1.14E-04
27	GO:0010150: leaf senescence	1.31E-04
28	GO:0046470: phosphatidylcholine metabolic process	1.64E-04
29	GO:0042742: defense response to bacterium	1.84E-04
30	GO:0060862: negative regulation of floral organ abscission	2.34E-04
31	GO:0010266: response to vitamin B1	2.34E-04
32	GO:0009700: indole phytoalexin biosynthetic process	2.34E-04
33	GO:0071366: cellular response to indolebutyric acid stimulus	2.34E-04
34	GO:0010230: alternative respiration	2.34E-04
35	GO:0006643: membrane lipid metabolic process	2.34E-04
36	GO:0043069: negative regulation of programmed cell death	4.36E-04
37	GO:0009682: induced systemic resistance	5.04E-04
38	GO:0071668: plant-type cell wall assembly	5.20E-04
39	GO:0006996: organelle organization	5.20E-04
40	GO:0055088: lipid homeostasis	5.20E-04
41	GO:0006101: citrate metabolic process	5.20E-04
42	GO:0015908: fatty acid transport	5.20E-04
43	GO:0043066: negative regulation of apoptotic process	5.20E-04
44	GO:0019752: carboxylic acid metabolic process	5.20E-04
45	GO:0042939: tripeptide transport	5.20E-04
46	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.20E-04
47	GO:0007154: cell communication	5.20E-04
48	GO:0009407: toxin catabolic process	6.31E-04
49	GO:0010043: response to zinc ion	6.69E-04
50	GO:0006979: response to oxidative stress	7.34E-04
51	GO:0051176: positive regulation of sulfur metabolic process	8.44E-04
52	GO:0048281: inflorescence morphogenesis	8.44E-04
53	GO:0042344: indole glucosinolate catabolic process	8.44E-04
54	GO:0034976: response to endoplasmic reticulum stress	9.13E-04
55	GO:0000187: activation of MAPK activity	1.20E-03
56	GO:0007231: osmosensory signaling pathway	1.20E-03
57	GO:0072334: UDP-galactose transmembrane transport	1.20E-03
58	GO:0033014: tetrapyrrole biosynthetic process	1.20E-03
59	GO:0009399: nitrogen fixation	1.20E-03
60	GO:0031348: negative regulation of defense response	1.33E-03
61	GO:0010188: response to microbial phytotoxin	1.61E-03
62	GO:0042938: dipeptide transport	1.61E-03
63	GO:0006542: glutamine biosynthetic process	1.61E-03
64	GO:0080037: negative regulation of cytokinin-activated signaling pathway	1.61E-03
65	GO:0070534: protein K63-linked ubiquitination	1.61E-03
66	GO:0048830: adventitious root development	1.61E-03
67	GO:0033500: carbohydrate homeostasis	1.61E-03
68	GO:0000413: protein peptidyl-prolyl isomerization	1.83E-03
69	GO:0006662: glycerol ether metabolic process	1.97E-03
70	GO:0006097: glyoxylate cycle	2.05E-03
71	GO:0045927: positive regulation of growth	2.05E-03
72	GO:0009697: salicylic acid biosynthetic process	2.05E-03
73	GO:0006090: pyruvate metabolic process	2.05E-03
74	GO:2000762: regulation of phenylpropanoid metabolic process	2.05E-03
75	GO:0019252: starch biosynthetic process	2.27E-03
76	GO:0010200: response to chitin	2.39E-03
77	GO:0009414: response to water deprivation	2.41E-03
78	GO:0000302: response to reactive oxygen species	2.43E-03
79	GO:0002238: response to molecule of fungal origin	2.52E-03
80	GO:0010942: positive regulation of cell death	2.52E-03
81	GO:0006301: postreplication repair	2.52E-03
82	GO:0015691: cadmium ion transport	2.52E-03
83	GO:0060918: auxin transport	2.52E-03
84	GO:0009612: response to mechanical stimulus	3.03E-03
85	GO:0034389: lipid particle organization	3.03E-03
86	GO:0006694: steroid biosynthetic process	3.03E-03
87	GO:0010044: response to aluminum ion	3.58E-03
88	GO:0043090: amino acid import	3.58E-03
89	GO:0080186: developmental vegetative growth	3.58E-03
90	GO:0009737: response to abscisic acid	3.76E-03
91	GO:0016042: lipid catabolic process	3.92E-03
92	GO:0009751: response to salicylic acid	4.01E-03
93	GO:0006950: response to stress	4.13E-03
94	GO:0006102: isocitrate metabolic process	4.15E-03
95	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.15E-03
96	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.15E-03
97	GO:0009819: drought recovery	4.15E-03
98	GO:0030162: regulation of proteolysis	4.15E-03
99	GO:0006605: protein targeting	4.15E-03
100	GO:0009753: response to jasmonic acid	4.56E-03
101	GO:0006526: arginine biosynthetic process	4.74E-03
102	GO:0030968: endoplasmic reticulum unfolded protein response	4.74E-03
103	GO:0010208: pollen wall assembly	4.74E-03
104	GO:0010120: camalexin biosynthetic process	4.74E-03
105	GO:0006783: heme biosynthetic process	5.37E-03
106	GO:0010112: regulation of systemic acquired resistance	5.37E-03
107	GO:0009051: pentose-phosphate shunt, oxidative branch	5.37E-03
108	GO:0009821: alkaloid biosynthetic process	5.37E-03
109	GO:0009617: response to bacterium	5.86E-03
110	GO:0010205: photoinhibition	6.03E-03
111	GO:0006099: tricarboxylic acid cycle	6.05E-03
112	GO:0034599: cellular response to oxidative stress	6.05E-03
113	GO:0009641: shade avoidance	6.71E-03
114	GO:0006995: cellular response to nitrogen starvation	6.71E-03
115	GO:0009684: indoleacetic acid biosynthetic process	7.43E-03
116	GO:0000038: very long-chain fatty acid metabolic process	7.43E-03
117	GO:0072593: reactive oxygen species metabolic process	7.43E-03
118	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.17E-03
119	GO:0009636: response to toxic substance	8.39E-03
120	GO:0006855: drug transmembrane transport	8.71E-03
121	GO:0006108: malate metabolic process	8.93E-03
122	GO:0007034: vacuolar transport	9.72E-03
123	GO:0009723: response to ethylene	9.82E-03
124	GO:0009651: response to salt stress	9.98E-03
125	GO:0090351: seedling development	1.05E-02
126	GO:0070588: calcium ion transmembrane transport	1.05E-02
127	GO:0010053: root epidermal cell differentiation	1.05E-02
128	GO:0010039: response to iron ion	1.05E-02
129	GO:0080167: response to karrikin	1.07E-02
130	GO:2000377: regulation of reactive oxygen species metabolic process	1.22E-02
131	GO:0080147: root hair cell development	1.22E-02
132	GO:0016998: cell wall macromolecule catabolic process	1.40E-02
133	GO:0051260: protein homooligomerization	1.40E-02
134	GO:0006457: protein folding	1.45E-02
135	GO:0071456: cellular response to hypoxia	1.50E-02
136	GO:0009814: defense response, incompatible interaction	1.50E-02
137	GO:0016226: iron-sulfur cluster assembly	1.50E-02
138	GO:0006012: galactose metabolic process	1.59E-02
139	GO:0071215: cellular response to abscisic acid stimulus	1.59E-02
140	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.79E-02
141	GO:0042147: retrograde transport, endosome to Golgi	1.79E-02
142	GO:0010051: xylem and phloem pattern formation	1.89E-02
143	GO:0042631: cellular response to water deprivation	1.89E-02
144	GO:0006885: regulation of pH	1.99E-02
145	GO:0045489: pectin biosynthetic process	1.99E-02
146	GO:0006520: cellular amino acid metabolic process	1.99E-02
147	GO:0050832: defense response to fungus	2.10E-02
148	GO:0009646: response to absence of light	2.10E-02
149	GO:0048544: recognition of pollen	2.10E-02
150	GO:0009851: auxin biosynthetic process	2.20E-02
151	GO:0006508: proteolysis	2.24E-02
152	GO:0006891: intra-Golgi vesicle-mediated transport	2.31E-02
153	GO:0040008: regulation of growth	2.38E-02
154	GO:0009630: gravitropism	2.42E-02
155	GO:0019761: glucosinolate biosynthetic process	2.42E-02
156	GO:0006468: protein phosphorylation	2.48E-02
157	GO:0030163: protein catabolic process	2.54E-02
158	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.79E-02
159	GO:0009615: response to virus	3.01E-02
160	GO:0009607: response to biotic stimulus	3.13E-02
161	GO:0009816: defense response to bacterium, incompatible interaction	3.13E-02
162	GO:0042128: nitrate assimilation	3.25E-02
163	GO:0015995: chlorophyll biosynthetic process	3.38E-02
164	GO:0008219: cell death	3.63E-02
165	GO:0009817: defense response to fungus, incompatible interaction	3.63E-02
166	GO:0009813: flavonoid biosynthetic process	3.76E-02
167	GO:0048527: lateral root development	4.03E-02
168	GO:0009631: cold acclimation	4.03E-02
169	GO:0006865: amino acid transport	4.16E-02
170	GO:0045087: innate immune response	4.30E-02
171	GO:0016051: carbohydrate biosynthetic process	4.30E-02
172	GO:0009409: response to cold	4.36E-02
173	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0008777: acetylornithine deacetylase activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
4	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
5	GO:0015370: solute:sodium symporter activity	0.00E+00
6	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
7	GO:0050220: prostaglandin-E synthase activity	0.00E+00
8	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
9	GO:0004364: glutathione transferase activity	1.13E-04
10	GO:0004747: ribokinase activity	1.24E-04
11	GO:0004602: glutathione peroxidase activity	1.24E-04
12	GO:0043295: glutathione binding	1.64E-04
13	GO:0008865: fructokinase activity	2.09E-04
14	GO:0015245: fatty acid transporter activity	2.34E-04
15	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.34E-04
16	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.34E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.34E-04
18	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.34E-04
19	GO:0015085: calcium ion transmembrane transporter activity	2.34E-04
20	GO:0004048: anthranilate phosphoribosyltransferase activity	2.34E-04
21	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	2.34E-04
22	GO:0004325: ferrochelatase activity	2.34E-04
23	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.34E-04
24	GO:0031625: ubiquitin protein ligase binding	2.42E-04
25	GO:0004630: phospholipase D activity	2.59E-04
26	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.59E-04
27	GO:0015035: protein disulfide oxidoreductase activity	3.82E-04
28	GO:0016746: transferase activity, transferring acyl groups	3.82E-04
29	GO:0004566: beta-glucuronidase activity	5.20E-04
30	GO:0047364: desulfoglucosinolate sulfotransferase activity	5.20E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	5.20E-04
32	GO:0003994: aconitate hydratase activity	5.20E-04
33	GO:0004338: glucan exo-1,3-beta-glucosidase activity	5.20E-04
34	GO:0042937: tripeptide transporter activity	5.20E-04
35	GO:0005509: calcium ion binding	6.03E-04
36	GO:0004190: aspartic-type endopeptidase activity	8.23E-04
37	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	8.44E-04
38	GO:0016174: NAD(P)H oxidase activity	8.44E-04
39	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	8.44E-04
40	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.20E-03
41	GO:0015086: cadmium ion transmembrane transporter activity	1.20E-03
42	GO:0003756: protein disulfide isomerase activity	1.57E-03
43	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.61E-03
44	GO:0015204: urea transmembrane transporter activity	1.61E-03
45	GO:0004834: tryptophan synthase activity	1.61E-03
46	GO:0042936: dipeptide transporter activity	1.61E-03
47	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.61E-03
48	GO:0004470: malic enzyme activity	1.61E-03
49	GO:0047134: protein-disulfide reductase activity	1.70E-03
50	GO:0004356: glutamate-ammonia ligase activity	2.05E-03
51	GO:0045431: flavonol synthase activity	2.05E-03
52	GO:0015301: anion:anion antiporter activity	2.05E-03
53	GO:0005459: UDP-galactose transmembrane transporter activity	2.05E-03
54	GO:0005452: inorganic anion exchanger activity	2.05E-03
55	GO:0008948: oxaloacetate decarboxylase activity	2.05E-03
56	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	2.05E-03
57	GO:0004791: thioredoxin-disulfide reductase activity	2.12E-03
58	GO:0030976: thiamine pyrophosphate binding	2.52E-03
59	GO:0035252: UDP-xylosyltransferase activity	2.52E-03
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.77E-03
61	GO:0004656: procollagen-proline 4-dioxygenase activity	3.03E-03
62	GO:0004012: phospholipid-translocating ATPase activity	3.03E-03
63	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.35E-03
64	GO:0008320: protein transmembrane transporter activity	3.58E-03
65	GO:0016831: carboxy-lyase activity	3.58E-03
66	GO:0004708: MAP kinase kinase activity	4.15E-03
67	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.15E-03
68	GO:0004034: aldose 1-epimerase activity	4.15E-03
69	GO:0019825: oxygen binding	4.68E-03
70	GO:0005507: copper ion binding	4.68E-03
71	GO:0071949: FAD binding	5.37E-03
72	GO:0016844: strictosidine synthase activity	6.03E-03
73	GO:0008047: enzyme activator activity	6.71E-03
74	GO:0004713: protein tyrosine kinase activity	6.71E-03
75	GO:0008794: arsenate reductase (glutaredoxin) activity	7.43E-03
76	GO:0016301: kinase activity	7.45E-03
77	GO:0015293: symporter activity	8.39E-03
78	GO:0005506: iron ion binding	8.41E-03
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.71E-03
80	GO:0005388: calcium-transporting ATPase activity	8.93E-03
81	GO:0004022: alcohol dehydrogenase (NAD) activity	8.93E-03
82	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.93E-03
83	GO:0051287: NAD binding	9.04E-03
84	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.72E-03
85	GO:0016298: lipase activity	1.04E-02
86	GO:0008061: chitin binding	1.05E-02
87	GO:0008146: sulfotransferase activity	1.05E-02
88	GO:0004497: monooxygenase activity	1.07E-02
89	GO:0061630: ubiquitin protein ligase activity	1.14E-02
90	GO:0052689: carboxylic ester hydrolase activity	1.22E-02
91	GO:0004298: threonine-type endopeptidase activity	1.40E-02
92	GO:0008810: cellulase activity	1.59E-02
93	GO:0005524: ATP binding	1.61E-02
94	GO:0008514: organic anion transmembrane transporter activity	1.69E-02
95	GO:0005451: monovalent cation:proton antiporter activity	1.89E-02
96	GO:0020037: heme binding	1.90E-02
97	GO:0016853: isomerase activity	2.10E-02
98	GO:0015299: solute:proton antiporter activity	2.10E-02
99	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.32E-02
100	GO:0015385: sodium:proton antiporter activity	2.54E-02
101	GO:0008483: transaminase activity	2.77E-02
102	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.77E-02
103	GO:0008237: metallopeptidase activity	2.77E-02
104	GO:0016597: amino acid binding	2.89E-02
105	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.16E-02
106	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.25E-02
107	GO:0004683: calmodulin-dependent protein kinase activity	3.38E-02
108	GO:0030247: polysaccharide binding	3.38E-02
109	GO:0015238: drug transmembrane transporter activity	3.76E-02
110	GO:0004601: peroxidase activity	3.85E-02
111	GO:0016788: hydrolase activity, acting on ester bonds	3.92E-02
112	GO:0050897: cobalt ion binding	4.03E-02
113	GO:0016491: oxidoreductase activity	4.19E-02
114	GO:0003746: translation elongation factor activity	4.30E-02
115	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.30E-02
116	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.43E-02
117	GO:0004842: ubiquitin-protein transferase activity	4.49E-02
118	GO:0008233: peptidase activity	4.68E-02
119	GO:0051539: 4 iron, 4 sulfur cluster binding	4.71E-02
120	GO:0004672: protein kinase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	4.91E-10
2	GO:0005783: endoplasmic reticulum	2.67E-06
3	GO:0016021: integral component of membrane	2.72E-05
4	GO:0005789: endoplasmic reticulum membrane	3.07E-05
5	GO:0005829: cytosol	4.14E-05
6	GO:0045252: oxoglutarate dehydrogenase complex	2.34E-04
7	GO:0005765: lysosomal membrane	5.04E-04
8	GO:0009536: plastid	1.12E-03
9	GO:0005775: vacuolar lumen	1.20E-03
10	GO:0048046: apoplast	1.56E-03
11	GO:0031372: UBC13-MMS2 complex	1.61E-03
12	GO:0030660: Golgi-associated vesicle membrane	1.61E-03
13	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.61E-03
14	GO:0005618: cell wall	1.95E-03
15	GO:0016020: membrane	2.73E-03
16	GO:0030173: integral component of Golgi membrane	3.03E-03
17	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.58E-03
18	GO:0005788: endoplasmic reticulum lumen	3.71E-03
19	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.15E-03
20	GO:0005811: lipid particle	4.74E-03
21	GO:0019773: proteasome core complex, alpha-subunit complex	4.74E-03
22	GO:0009570: chloroplast stroma	7.03E-03
23	GO:0030176: integral component of endoplasmic reticulum membrane	1.05E-02
24	GO:0005774: vacuolar membrane	1.07E-02
25	GO:0031969: chloroplast membrane	1.07E-02
26	GO:0009507: chloroplast	1.13E-02
27	GO:0005839: proteasome core complex	1.40E-02
28	GO:0005794: Golgi apparatus	1.91E-02
29	GO:0005737: cytoplasm	2.40E-02
30	GO:0005773: vacuole	2.60E-02
31	GO:0032580: Golgi cisterna membrane	2.65E-02
32	GO:0046658: anchored component of plasma membrane	3.30E-02
33	GO:0019005: SCF ubiquitin ligase complex	3.63E-02
34	GO:0009707: chloroplast outer membrane	3.63E-02
35	GO:0000151: ubiquitin ligase complex	3.63E-02
36	GO:0009506: plasmodesma	3.83E-02
37	GO:0009941: chloroplast envelope	4.88E-02