co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
5	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
6	GO:0046322: negative regulation of fatty acid oxidation	0.00E+00
7	GO:0090391: granum assembly	7.70E-06
8	GO:0006869: lipid transport	1.18E-05
9	GO:0009828: plant-type cell wall loosening	1.49E-05
10	GO:0031365: N-terminal protein amino acid modification	5.18E-05
11	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.12E-05
12	GO:0071555: cell wall organization	1.20E-04
13	GO:0042335: cuticle development	1.31E-04
14	GO:0009664: plant-type cell wall organization	1.40E-04
15	GO:0010196: nonphotochemical quenching	1.40E-04
16	GO:0043686: co-translational protein modification	2.11E-04
17	GO:1902458: positive regulation of stomatal opening	2.11E-04
18	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.11E-04
19	GO:0005980: glycogen catabolic process	2.11E-04
20	GO:0009826: unidimensional cell growth	2.17E-04
21	GO:0010027: thylakoid membrane organization	3.27E-04
22	GO:0006949: syncytium formation	3.76E-04
23	GO:0010411: xyloglucan metabolic process	4.04E-04
24	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.71E-04
25	GO:0043039: tRNA aminoacylation	4.71E-04
26	GO:0010207: photosystem II assembly	6.38E-04
27	GO:1901562: response to paraquat	7.67E-04
28	GO:0006065: UDP-glucuronate biosynthetic process	7.67E-04
29	GO:0046168: glycerol-3-phosphate catabolic process	7.67E-04
30	GO:0042546: cell wall biogenesis	9.01E-04
31	GO:0007017: microtubule-based process	9.63E-04
32	GO:0050482: arachidonic acid secretion	1.09E-03
33	GO:0009413: response to flooding	1.09E-03
34	GO:0006072: glycerol-3-phosphate metabolic process	1.09E-03
35	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.09E-03
36	GO:0009650: UV protection	1.09E-03
37	GO:0010306: rhamnogalacturonan II biosynthetic process	1.09E-03
38	GO:0010037: response to carbon dioxide	1.45E-03
39	GO:0015976: carbon utilization	1.45E-03
40	GO:0009765: photosynthesis, light harvesting	1.45E-03
41	GO:0006183: GTP biosynthetic process	1.45E-03
42	GO:0030007: cellular potassium ion homeostasis	1.45E-03
43	GO:2000122: negative regulation of stomatal complex development	1.45E-03
44	GO:0000413: protein peptidyl-prolyl isomerization	1.58E-03
45	GO:0045038: protein import into chloroplast thylakoid membrane	1.85E-03
46	GO:0016123: xanthophyll biosynthetic process	1.85E-03
47	GO:0006665: sphingolipid metabolic process	1.85E-03
48	GO:0034052: positive regulation of plant-type hypersensitive response	1.85E-03
49	GO:0016120: carotene biosynthetic process	1.85E-03
50	GO:0006014: D-ribose metabolic process	2.28E-03
51	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.28E-03
52	GO:0010555: response to mannitol	2.74E-03
53	GO:0071470: cellular response to osmotic stress	2.74E-03
54	GO:0009612: response to mechanical stimulus	2.74E-03
55	GO:0009645: response to low light intensity stimulus	3.23E-03
56	GO:0042128: nitrate assimilation	3.38E-03
57	GO:2000070: regulation of response to water deprivation	3.74E-03
58	GO:0006644: phospholipid metabolic process	3.74E-03
59	GO:0048564: photosystem I assembly	3.74E-03
60	GO:0009642: response to light intensity	3.74E-03
61	GO:0043068: positive regulation of programmed cell death	3.74E-03
62	GO:0005975: carbohydrate metabolic process	4.28E-03
63	GO:0015996: chlorophyll catabolic process	4.29E-03
64	GO:0007186: G-protein coupled receptor signaling pathway	4.29E-03
65	GO:0010119: regulation of stomatal movement	4.55E-03
66	GO:0006754: ATP biosynthetic process	4.85E-03
67	GO:0034765: regulation of ion transmembrane transport	4.85E-03
68	GO:0016051: carbohydrate biosynthetic process	4.99E-03
69	GO:0042761: very long-chain fatty acid biosynthetic process	5.44E-03
70	GO:0009735: response to cytokinin	6.81E-03
71	GO:0016024: CDP-diacylglycerol biosynthetic process	7.36E-03
72	GO:0045037: protein import into chloroplast stroma	7.36E-03
73	GO:0009725: response to hormone	8.04E-03
74	GO:0009266: response to temperature stimulus	8.75E-03
75	GO:0009969: xyloglucan biosynthetic process	9.48E-03
76	GO:0010167: response to nitrate	9.48E-03
77	GO:0010025: wax biosynthetic process	1.02E-02
78	GO:0051017: actin filament bundle assembly	1.10E-02
79	GO:0019344: cysteine biosynthetic process	1.10E-02
80	GO:0045454: cell redox homeostasis	1.12E-02
81	GO:0019953: sexual reproduction	1.18E-02
82	GO:0006418: tRNA aminoacylation for protein translation	1.18E-02
83	GO:0016998: cell wall macromolecule catabolic process	1.26E-02
84	GO:0051260: protein homooligomerization	1.26E-02
85	GO:0010431: seed maturation	1.26E-02
86	GO:0031348: negative regulation of defense response	1.34E-02
87	GO:0030245: cellulose catabolic process	1.34E-02
88	GO:0009814: defense response, incompatible interaction	1.34E-02
89	GO:0016042: lipid catabolic process	1.40E-02
90	GO:0009411: response to UV	1.43E-02
91	GO:0006012: galactose metabolic process	1.43E-02
92	GO:0009294: DNA mediated transformation	1.43E-02
93	GO:0019722: calcium-mediated signaling	1.52E-02
94	GO:0010091: trichome branching	1.52E-02
95	GO:0016117: carotenoid biosynthetic process	1.61E-02
96	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.61E-02
97	GO:0006508: proteolysis	1.68E-02
98	GO:0080022: primary root development	1.70E-02
99	GO:0010182: sugar mediated signaling pathway	1.79E-02
100	GO:0048868: pollen tube development	1.79E-02
101	GO:0006633: fatty acid biosynthetic process	1.95E-02
102	GO:0019252: starch biosynthetic process	1.98E-02
103	GO:0010583: response to cyclopentenone	2.18E-02
104	GO:0009739: response to gibberellin	2.40E-02
105	GO:0009737: response to abscisic acid	2.44E-02
106	GO:0007166: cell surface receptor signaling pathway	2.45E-02
107	GO:0007267: cell-cell signaling	2.49E-02
108	GO:0071805: potassium ion transmembrane transport	2.49E-02
109	GO:0010029: regulation of seed germination	2.81E-02
110	GO:0009627: systemic acquired resistance	2.92E-02
111	GO:0009817: defense response to fungus, incompatible interaction	3.27E-02
112	GO:0000160: phosphorelay signal transduction system	3.38E-02
113	GO:0007568: aging	3.62E-02
114	GO:0045087: innate immune response	3.86E-02
115	GO:0034599: cellular response to oxidative stress	3.99E-02
116	GO:0006457: protein folding	4.12E-02
117	GO:0030001: metal ion transport	4.24E-02
118	GO:0010114: response to red light	4.63E-02
119	GO:0009744: response to sucrose	4.63E-02
120	GO:0015979: photosynthesis	4.68E-02
121	GO:0009644: response to high light intensity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0090711: FMN hydrolase activity	0.00E+00
5	GO:0015269: calcium-activated potassium channel activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
9	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
10	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
11	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.76E-05
12	GO:0008289: lipid binding	4.57E-05
13	GO:0051920: peroxiredoxin activity	1.06E-04
14	GO:0016209: antioxidant activity	1.78E-04
15	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.97E-04
16	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.11E-04
17	GO:0008184: glycogen phosphorylase activity	2.11E-04
18	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.11E-04
19	GO:0004831: tyrosine-tRNA ligase activity	2.11E-04
20	GO:0042586: peptide deformylase activity	2.11E-04
21	GO:0004645: phosphorylase activity	2.11E-04
22	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	2.70E-04
23	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.04E-04
24	GO:0003938: IMP dehydrogenase activity	4.71E-04
25	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.71E-04
26	GO:0008378: galactosyltransferase activity	4.99E-04
27	GO:0004751: ribose-5-phosphate isomerase activity	7.67E-04
28	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	7.67E-04
29	GO:0003979: UDP-glucose 6-dehydrogenase activity	7.67E-04
30	GO:0016788: hydrolase activity, acting on ester bonds	1.34E-03
31	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.45E-03
32	GO:0080032: methyl jasmonate esterase activity	1.45E-03
33	GO:0052793: pectin acetylesterase activity	1.45E-03
34	GO:0009922: fatty acid elongase activity	1.85E-03
35	GO:0004623: phospholipase A2 activity	1.85E-03
36	GO:0015271: outward rectifier potassium channel activity	2.28E-03
37	GO:0080030: methyl indole-3-acetate esterase activity	2.28E-03
38	GO:0005200: structural constituent of cytoskeleton	2.70E-03
39	GO:0004747: ribokinase activity	2.74E-03
40	GO:0051753: mannan synthase activity	2.74E-03
41	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.15E-03
42	GO:0008235: metalloexopeptidase activity	3.23E-03
43	GO:0004034: aldose 1-epimerase activity	3.74E-03
44	GO:0008865: fructokinase activity	3.74E-03
45	GO:0052747: sinapyl alcohol dehydrogenase activity	3.74E-03
46	GO:0005267: potassium channel activity	4.29E-03
47	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.85E-03
48	GO:0015020: glucuronosyltransferase activity	6.06E-03
49	GO:0004177: aminopeptidase activity	6.69E-03
50	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.36E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.50E-03
52	GO:0051287: NAD binding	7.79E-03
53	GO:0004089: carbonate dehydratase activity	8.04E-03
54	GO:0052689: carboxylic ester hydrolase activity	1.01E-02
55	GO:0004857: enzyme inhibitor activity	1.10E-02
56	GO:0004650: polygalacturonase activity	1.13E-02
57	GO:0030599: pectinesterase activity	1.16E-02
58	GO:0043424: protein histidine kinase binding	1.18E-02
59	GO:0005216: ion channel activity	1.18E-02
60	GO:0008810: cellulase activity	1.43E-02
61	GO:0004812: aminoacyl-tRNA ligase activity	1.61E-02
62	GO:0016853: isomerase activity	1.88E-02
63	GO:0004872: receptor activity	1.98E-02
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.00E-02
65	GO:0005509: calcium ion binding	2.00E-02
66	GO:0051015: actin filament binding	2.28E-02
67	GO:0000156: phosphorelay response regulator activity	2.28E-02
68	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.49E-02
69	GO:0008237: metallopeptidase activity	2.49E-02
70	GO:0008375: acetylglucosaminyltransferase activity	2.92E-02
71	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.15E-02
72	GO:0004601: peroxidase activity	3.32E-02
73	GO:0004222: metalloendopeptidase activity	3.50E-02
74	GO:0051539: 4 iron, 4 sulfur cluster binding	4.24E-02
75	GO:0043621: protein self-association	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	2.16E-15
3	GO:0009507: chloroplast	3.63E-12
4	GO:0009543: chloroplast thylakoid lumen	8.16E-12
5	GO:0005618: cell wall	4.35E-11
6	GO:0009579: thylakoid	1.19E-10
7	GO:0031977: thylakoid lumen	1.26E-10
8	GO:0048046: apoplast	1.95E-10
9	GO:0009570: chloroplast stroma	3.53E-10
10	GO:0009534: chloroplast thylakoid	2.39E-08
11	GO:0005576: extracellular region	6.33E-06
12	GO:0009505: plant-type cell wall	7.55E-06
13	GO:0031225: anchored component of membrane	5.46E-05
14	GO:0009654: photosystem II oxygen evolving complex	5.99E-05
15	GO:0046658: anchored component of plasma membrane	1.72E-04
16	GO:0019898: extrinsic component of membrane	1.79E-04
17	GO:0009923: fatty acid elongase complex	2.11E-04
18	GO:0009941: chloroplast envelope	2.42E-04
19	GO:0045298: tubulin complex	2.70E-04
20	GO:0009528: plastid inner membrane	7.67E-04
21	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.09E-03
22	GO:0016020: membrane	1.42E-03
23	GO:0009527: plastid outer membrane	1.45E-03
24	GO:0010319: stromule	2.70E-03
25	GO:0009533: chloroplast stromal thylakoid	3.23E-03
26	GO:0009707: chloroplast outer membrane	3.94E-03
27	GO:0005886: plasma membrane	7.54E-03
28	GO:0030095: chloroplast photosystem II	8.75E-03
29	GO:0005875: microtubule associated complex	1.02E-02
30	GO:0009506: plasmodesma	1.22E-02
31	GO:0009706: chloroplast inner membrane	1.24E-02
32	GO:0009532: plastid stroma	1.26E-02
33	GO:0031410: cytoplasmic vesicle	1.34E-02
34	GO:0015629: actin cytoskeleton	1.43E-02
35	GO:0005874: microtubule	3.97E-02
36	GO:0031969: chloroplast membrane	4.11E-02
37	GO:0005819: spindle	4.11E-02