GO Enrichment Analysis of Co-expressed Genes with
AT3G27690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 2 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 3 | GO:0019323: pentose catabolic process | 0.00E+00 |
| 4 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 4.84E-22 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 6.02E-15 |
| 7 | GO:0010196: nonphotochemical quenching | 5.88E-07 |
| 8 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 7.96E-07 |
| 9 | GO:0006000: fructose metabolic process | 2.99E-06 |
| 10 | GO:0019253: reductive pentose-phosphate cycle | 9.11E-06 |
| 11 | GO:0042742: defense response to bacterium | 1.13E-05 |
| 12 | GO:0010037: response to carbon dioxide | 1.33E-05 |
| 13 | GO:0015976: carbon utilization | 1.33E-05 |
| 14 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.33E-05 |
| 15 | GO:2000122: negative regulation of stomatal complex development | 1.33E-05 |
| 16 | GO:0006546: glycine catabolic process | 1.33E-05 |
| 17 | GO:0015986: ATP synthesis coupled proton transport | 5.59E-05 |
| 18 | GO:0009772: photosynthetic electron transport in photosystem II | 6.22E-05 |
| 19 | GO:0006002: fructose 6-phosphate metabolic process | 1.02E-04 |
| 20 | GO:0010027: thylakoid membrane organization | 1.20E-04 |
| 21 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.25E-04 |
| 22 | GO:1904964: positive regulation of phytol biosynthetic process | 1.25E-04 |
| 23 | GO:0006106: fumarate metabolic process | 1.25E-04 |
| 24 | GO:1902458: positive regulation of stomatal opening | 1.25E-04 |
| 25 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.25E-04 |
| 26 | GO:0010206: photosystem II repair | 1.25E-04 |
| 27 | GO:0044262: cellular carbohydrate metabolic process | 1.25E-04 |
| 28 | GO:0015995: chlorophyll biosynthetic process | 1.52E-04 |
| 29 | GO:0018298: protein-chromophore linkage | 1.76E-04 |
| 30 | GO:0009409: response to cold | 1.83E-04 |
| 31 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.10E-04 |
| 32 | GO:0006094: gluconeogenesis | 2.77E-04 |
| 33 | GO:0005986: sucrose biosynthetic process | 2.77E-04 |
| 34 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.90E-04 |
| 35 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.90E-04 |
| 36 | GO:0010207: photosystem II assembly | 3.14E-04 |
| 37 | GO:0009735: response to cytokinin | 4.57E-04 |
| 38 | GO:0035436: triose phosphate transmembrane transport | 4.78E-04 |
| 39 | GO:0090391: granum assembly | 4.78E-04 |
| 40 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.81E-04 |
| 41 | GO:0055070: copper ion homeostasis | 6.85E-04 |
| 42 | GO:0051513: regulation of monopolar cell growth | 6.85E-04 |
| 43 | GO:0071484: cellular response to light intensity | 6.85E-04 |
| 44 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 6.85E-04 |
| 45 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.85E-04 |
| 46 | GO:0010109: regulation of photosynthesis | 9.08E-04 |
| 47 | GO:0009765: photosynthesis, light harvesting | 9.08E-04 |
| 48 | GO:0045727: positive regulation of translation | 9.08E-04 |
| 49 | GO:0015713: phosphoglycerate transport | 9.08E-04 |
| 50 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.15E-03 |
| 51 | GO:0009643: photosynthetic acclimation | 1.41E-03 |
| 52 | GO:0010189: vitamin E biosynthetic process | 1.68E-03 |
| 53 | GO:0010019: chloroplast-nucleus signaling pathway | 1.68E-03 |
| 54 | GO:0071470: cellular response to osmotic stress | 1.68E-03 |
| 55 | GO:0017148: negative regulation of translation | 1.68E-03 |
| 56 | GO:0009817: defense response to fungus, incompatible interaction | 1.93E-03 |
| 57 | GO:0009631: cold acclimation | 2.22E-03 |
| 58 | GO:0010119: regulation of stomatal movement | 2.22E-03 |
| 59 | GO:2000070: regulation of response to water deprivation | 2.29E-03 |
| 60 | GO:0009819: drought recovery | 2.29E-03 |
| 61 | GO:0034599: cellular response to oxidative stress | 2.54E-03 |
| 62 | GO:0032544: plastid translation | 2.61E-03 |
| 63 | GO:0015996: chlorophyll catabolic process | 2.61E-03 |
| 64 | GO:0007186: G-protein coupled receptor signaling pathway | 2.61E-03 |
| 65 | GO:0055114: oxidation-reduction process | 2.93E-03 |
| 66 | GO:0006754: ATP biosynthetic process | 2.95E-03 |
| 67 | GO:0080167: response to karrikin | 3.51E-03 |
| 68 | GO:0000272: polysaccharide catabolic process | 4.06E-03 |
| 69 | GO:0010015: root morphogenesis | 4.06E-03 |
| 70 | GO:0045454: cell redox homeostasis | 4.41E-03 |
| 71 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.45E-03 |
| 72 | GO:0045037: protein import into chloroplast stroma | 4.45E-03 |
| 73 | GO:0006108: malate metabolic process | 4.86E-03 |
| 74 | GO:0006006: glucose metabolic process | 4.86E-03 |
| 75 | GO:0010143: cutin biosynthetic process | 5.28E-03 |
| 76 | GO:0005985: sucrose metabolic process | 5.71E-03 |
| 77 | GO:0046688: response to copper ion | 5.71E-03 |
| 78 | GO:0048511: rhythmic process | 7.56E-03 |
| 79 | GO:0009411: response to UV | 8.56E-03 |
| 80 | GO:0006012: galactose metabolic process | 8.56E-03 |
| 81 | GO:0042631: cellular response to water deprivation | 1.01E-02 |
| 82 | GO:0007623: circadian rhythm | 1.03E-02 |
| 83 | GO:0010182: sugar mediated signaling pathway | 1.07E-02 |
| 84 | GO:0042752: regulation of circadian rhythm | 1.12E-02 |
| 85 | GO:0019252: starch biosynthetic process | 1.18E-02 |
| 86 | GO:0000302: response to reactive oxygen species | 1.24E-02 |
| 87 | GO:0006810: transport | 1.34E-02 |
| 88 | GO:0009658: chloroplast organization | 1.60E-02 |
| 89 | GO:0009627: systemic acquired resistance | 1.74E-02 |
| 90 | GO:0042128: nitrate assimilation | 1.74E-02 |
| 91 | GO:0010218: response to far red light | 2.08E-02 |
| 92 | GO:0016051: carbohydrate biosynthetic process | 2.30E-02 |
| 93 | GO:0009637: response to blue light | 2.30E-02 |
| 94 | GO:0009853: photorespiration | 2.30E-02 |
| 95 | GO:0006099: tricarboxylic acid cycle | 2.37E-02 |
| 96 | GO:0006869: lipid transport | 2.61E-02 |
| 97 | GO:0010114: response to red light | 2.75E-02 |
| 98 | GO:0032259: methylation | 2.81E-02 |
| 99 | GO:0006364: rRNA processing | 3.40E-02 |
| 100 | GO:0006096: glycolytic process | 3.83E-02 |
| 101 | GO:0043086: negative regulation of catalytic activity | 3.83E-02 |
| 102 | GO:0009740: gibberellic acid mediated signaling pathway | 4.19E-02 |
| 103 | GO:0009624: response to nematode | 4.37E-02 |
| 104 | GO:0005975: carbohydrate metabolic process | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 4 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 5 | GO:0016168: chlorophyll binding | 1.25E-07 |
| 6 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 7.96E-07 |
| 7 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 7.04E-06 |
| 8 | GO:0051920: peroxiredoxin activity | 4.63E-05 |
| 9 | GO:0016209: antioxidant activity | 8.08E-05 |
| 10 | GO:0004333: fumarate hydratase activity | 1.25E-04 |
| 11 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.25E-04 |
| 12 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1.25E-04 |
| 13 | GO:0004089: carbonate dehydratase activity | 2.77E-04 |
| 14 | GO:0010297: heteropolysaccharide binding | 2.90E-04 |
| 15 | GO:0004047: aminomethyltransferase activity | 2.90E-04 |
| 16 | GO:0004750: ribulose-phosphate 3-epimerase activity | 2.90E-04 |
| 17 | GO:0030385: ferredoxin:thioredoxin reductase activity | 2.90E-04 |
| 18 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.90E-04 |
| 19 | GO:0008967: phosphoglycolate phosphatase activity | 2.90E-04 |
| 20 | GO:0031409: pigment binding | 3.93E-04 |
| 21 | GO:0071917: triose-phosphate transmembrane transporter activity | 4.78E-04 |
| 22 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.78E-04 |
| 23 | GO:0004324: ferredoxin-NADP+ reductase activity | 4.78E-04 |
| 24 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 4.78E-04 |
| 25 | GO:0022891: substrate-specific transmembrane transporter activity | 6.28E-04 |
| 26 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 6.85E-04 |
| 27 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 8.52E-04 |
| 28 | GO:0015120: phosphoglycerate transmembrane transporter activity | 9.08E-04 |
| 29 | GO:0004659: prenyltransferase activity | 9.08E-04 |
| 30 | GO:1990137: plant seed peroxidase activity | 9.08E-04 |
| 31 | GO:0043495: protein anchor | 9.08E-04 |
| 32 | GO:0019843: rRNA binding | 1.03E-03 |
| 33 | GO:0003959: NADPH dehydrogenase activity | 1.15E-03 |
| 34 | GO:0016688: L-ascorbate peroxidase activity | 1.41E-03 |
| 35 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.41E-03 |
| 36 | GO:0004130: cytochrome-c peroxidase activity | 1.41E-03 |
| 37 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.41E-03 |
| 38 | GO:0042578: phosphoric ester hydrolase activity | 1.41E-03 |
| 39 | GO:0004602: glutathione peroxidase activity | 1.68E-03 |
| 40 | GO:0004017: adenylate kinase activity | 1.68E-03 |
| 41 | GO:0019899: enzyme binding | 1.98E-03 |
| 42 | GO:0004034: aldose 1-epimerase activity | 2.29E-03 |
| 43 | GO:0015078: hydrogen ion transmembrane transporter activity | 2.61E-03 |
| 44 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.37E-03 |
| 45 | GO:0030234: enzyme regulator activity | 3.68E-03 |
| 46 | GO:0031072: heat shock protein binding | 4.86E-03 |
| 47 | GO:0008266: poly(U) RNA binding | 5.28E-03 |
| 48 | GO:0005528: FK506 binding | 6.61E-03 |
| 49 | GO:0005509: calcium ion binding | 6.63E-03 |
| 50 | GO:0004176: ATP-dependent peptidase activity | 7.56E-03 |
| 51 | GO:0030570: pectate lyase activity | 8.56E-03 |
| 52 | GO:0008289: lipid binding | 8.75E-03 |
| 53 | GO:0003756: protein disulfide isomerase activity | 9.07E-03 |
| 54 | GO:0016853: isomerase activity | 1.12E-02 |
| 55 | GO:0050662: coenzyme binding | 1.12E-02 |
| 56 | GO:0046872: metal ion binding | 1.13E-02 |
| 57 | GO:0016791: phosphatase activity | 1.42E-02 |
| 58 | GO:0008483: transaminase activity | 1.48E-02 |
| 59 | GO:0004601: peroxidase activity | 1.60E-02 |
| 60 | GO:0003993: acid phosphatase activity | 2.37E-02 |
| 61 | GO:0050661: NADP binding | 2.52E-02 |
| 62 | GO:0005198: structural molecule activity | 2.99E-02 |
| 63 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.07E-02 |
| 64 | GO:0051287: NAD binding | 3.15E-02 |
| 65 | GO:0003690: double-stranded DNA binding | 3.49E-02 |
| 66 | GO:0016491: oxidoreductase activity | 4.07E-02 |
| 67 | GO:0051082: unfolded protein binding | 4.37E-02 |
| 68 | GO:0016746: transferase activity, transferring acyl groups | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 3.12E-44 |
| 3 | GO:0009534: chloroplast thylakoid | 2.90E-36 |
| 4 | GO:0009507: chloroplast | 2.41E-35 |
| 5 | GO:0009579: thylakoid | 9.33E-28 |
| 6 | GO:0009941: chloroplast envelope | 3.33E-24 |
| 7 | GO:0009570: chloroplast stroma | 3.51E-14 |
| 8 | GO:0010319: stromule | 1.82E-13 |
| 9 | GO:0010287: plastoglobule | 2.86E-10 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 3.59E-10 |
| 11 | GO:0048046: apoplast | 7.12E-09 |
| 12 | GO:0030095: chloroplast photosystem II | 1.16E-07 |
| 13 | GO:0030093: chloroplast photosystem I | 7.96E-07 |
| 14 | GO:0009522: photosystem I | 1.52E-06 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.90E-06 |
| 16 | GO:0016020: membrane | 2.40E-06 |
| 17 | GO:0005960: glycine cleavage complex | 7.04E-06 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 1.91E-05 |
| 19 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 3.28E-05 |
| 20 | GO:0009523: photosystem II | 6.22E-05 |
| 21 | GO:0019898: extrinsic component of membrane | 6.22E-05 |
| 22 | GO:0009538: photosystem I reaction center | 8.08E-05 |
| 23 | GO:0009515: granal stacked thylakoid | 1.25E-04 |
| 24 | GO:0045239: tricarboxylic acid cycle enzyme complex | 1.25E-04 |
| 25 | GO:0009783: photosystem II antenna complex | 1.25E-04 |
| 26 | GO:0009508: plastid chromosome | 2.77E-04 |
| 27 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.90E-04 |
| 28 | GO:0031977: thylakoid lumen | 3.07E-04 |
| 29 | GO:0009528: plastid inner membrane | 4.78E-04 |
| 30 | GO:0042651: thylakoid membrane | 4.81E-04 |
| 31 | GO:0031969: chloroplast membrane | 6.02E-04 |
| 32 | GO:0009544: chloroplast ATP synthase complex | 9.08E-04 |
| 33 | GO:0009527: plastid outer membrane | 9.08E-04 |
| 34 | GO:0009517: PSII associated light-harvesting complex II | 9.08E-04 |
| 35 | GO:0055035: plastid thylakoid membrane | 1.15E-03 |
| 36 | GO:0009295: nucleoid | 1.32E-03 |
| 37 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 1.41E-03 |
| 38 | GO:0005811: lipid particle | 2.61E-03 |
| 39 | GO:0042644: chloroplast nucleoid | 2.95E-03 |
| 40 | GO:0030076: light-harvesting complex | 5.71E-03 |
| 41 | GO:0009706: chloroplast inner membrane | 5.96E-03 |
| 42 | GO:0016021: integral component of membrane | 6.34E-03 |
| 43 | GO:0009532: plastid stroma | 7.56E-03 |
| 44 | GO:0009707: chloroplast outer membrane | 1.94E-02 |
| 45 | GO:0005840: ribosome | 3.08E-02 |