GO Enrichment Analysis of Co-expressed Genes with
AT3G27540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 2 | GO:0006223: uracil salvage | 0.00E+00 |
| 3 | GO:0032544: plastid translation | 4.87E-07 |
| 4 | GO:0009932: cell tip growth | 5.37E-05 |
| 5 | GO:0006412: translation | 6.47E-05 |
| 6 | GO:0010442: guard cell morphogenesis | 8.25E-05 |
| 7 | GO:0070981: L-asparagine biosynthetic process | 1.97E-04 |
| 8 | GO:0080183: response to photooxidative stress | 1.97E-04 |
| 9 | GO:0006529: asparagine biosynthetic process | 1.97E-04 |
| 10 | GO:0052541: plant-type cell wall cellulose metabolic process | 1.97E-04 |
| 11 | GO:0015979: photosynthesis | 3.05E-04 |
| 12 | GO:0015714: phosphoenolpyruvate transport | 3.29E-04 |
| 13 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 4.75E-04 |
| 14 | GO:0006241: CTP biosynthetic process | 4.75E-04 |
| 15 | GO:0006165: nucleoside diphosphate phosphorylation | 4.75E-04 |
| 16 | GO:0006228: UTP biosynthetic process | 4.75E-04 |
| 17 | GO:0006021: inositol biosynthetic process | 6.32E-04 |
| 18 | GO:0006183: GTP biosynthetic process | 6.32E-04 |
| 19 | GO:0015713: phosphoglycerate transport | 6.32E-04 |
| 20 | GO:0044206: UMP salvage | 6.32E-04 |
| 21 | GO:0016123: xanthophyll biosynthetic process | 8.00E-04 |
| 22 | GO:0043097: pyrimidine nucleoside salvage | 8.00E-04 |
| 23 | GO:0009972: cytidine deamination | 9.77E-04 |
| 24 | GO:0006555: methionine metabolic process | 9.77E-04 |
| 25 | GO:0006206: pyrimidine nucleobase metabolic process | 9.77E-04 |
| 26 | GO:0007035: vacuolar acidification | 9.77E-04 |
| 27 | GO:0046855: inositol phosphate dephosphorylation | 9.77E-04 |
| 28 | GO:0015995: chlorophyll biosynthetic process | 1.01E-03 |
| 29 | GO:0009854: oxidative photosynthetic carbon pathway | 1.16E-03 |
| 30 | GO:0009955: adaxial/abaxial pattern specification | 1.16E-03 |
| 31 | GO:1901259: chloroplast rRNA processing | 1.16E-03 |
| 32 | GO:0006605: protein targeting | 1.57E-03 |
| 33 | GO:0048564: photosystem I assembly | 1.57E-03 |
| 34 | GO:0008610: lipid biosynthetic process | 1.57E-03 |
| 35 | GO:0008643: carbohydrate transport | 1.94E-03 |
| 36 | GO:0006783: heme biosynthetic process | 2.02E-03 |
| 37 | GO:0009245: lipid A biosynthetic process | 2.02E-03 |
| 38 | GO:0045454: cell redox homeostasis | 2.15E-03 |
| 39 | GO:0042538: hyperosmotic salinity response | 2.24E-03 |
| 40 | GO:0035999: tetrahydrofolate interconversion | 2.26E-03 |
| 41 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 2.51E-03 |
| 42 | GO:0006535: cysteine biosynthetic process from serine | 2.51E-03 |
| 43 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.51E-03 |
| 44 | GO:0043085: positive regulation of catalytic activity | 2.77E-03 |
| 45 | GO:0048765: root hair cell differentiation | 2.77E-03 |
| 46 | GO:0006790: sulfur compound metabolic process | 3.03E-03 |
| 47 | GO:0055114: oxidation-reduction process | 3.20E-03 |
| 48 | GO:0009725: response to hormone | 3.31E-03 |
| 49 | GO:0006541: glutamine metabolic process | 3.59E-03 |
| 50 | GO:0019853: L-ascorbic acid biosynthetic process | 3.88E-03 |
| 51 | GO:0046854: phosphatidylinositol phosphorylation | 3.88E-03 |
| 52 | GO:0010053: root epidermal cell differentiation | 3.88E-03 |
| 53 | GO:0006071: glycerol metabolic process | 4.18E-03 |
| 54 | GO:0019762: glucosinolate catabolic process | 4.18E-03 |
| 55 | GO:0019344: cysteine biosynthetic process | 4.48E-03 |
| 56 | GO:0009116: nucleoside metabolic process | 4.48E-03 |
| 57 | GO:0045333: cellular respiration | 4.48E-03 |
| 58 | GO:0010026: trichome differentiation | 4.80E-03 |
| 59 | GO:0015992: proton transport | 5.12E-03 |
| 60 | GO:0061077: chaperone-mediated protein folding | 5.12E-03 |
| 61 | GO:0009735: response to cytokinin | 5.17E-03 |
| 62 | GO:0006730: one-carbon metabolic process | 5.45E-03 |
| 63 | GO:0009411: response to UV | 5.78E-03 |
| 64 | GO:0009416: response to light stimulus | 5.80E-03 |
| 65 | GO:0009306: protein secretion | 6.13E-03 |
| 66 | GO:0016117: carotenoid biosynthetic process | 6.48E-03 |
| 67 | GO:0008033: tRNA processing | 6.83E-03 |
| 68 | GO:0042335: cuticle development | 6.83E-03 |
| 69 | GO:0008380: RNA splicing | 6.98E-03 |
| 70 | GO:0006662: glycerol ether metabolic process | 7.20E-03 |
| 71 | GO:0009646: response to absence of light | 7.57E-03 |
| 72 | GO:0032502: developmental process | 8.73E-03 |
| 73 | GO:0009658: chloroplast organization | 9.05E-03 |
| 74 | GO:1901657: glycosyl compound metabolic process | 9.12E-03 |
| 75 | GO:0042254: ribosome biogenesis | 9.22E-03 |
| 76 | GO:0009567: double fertilization forming a zygote and endosperm | 9.53E-03 |
| 77 | GO:0010286: heat acclimation | 9.94E-03 |
| 78 | GO:0010027: thylakoid membrane organization | 1.08E-02 |
| 79 | GO:0009627: systemic acquired resistance | 1.17E-02 |
| 80 | GO:0009853: photorespiration | 1.54E-02 |
| 81 | GO:0034599: cellular response to oxidative stress | 1.59E-02 |
| 82 | GO:0006397: mRNA processing | 1.73E-02 |
| 83 | GO:0042542: response to hydrogen peroxide | 1.79E-02 |
| 84 | GO:0009585: red, far-red light phototransduction | 2.28E-02 |
| 85 | GO:0005975: carbohydrate metabolic process | 2.40E-02 |
| 86 | GO:0046686: response to cadmium ion | 2.48E-02 |
| 87 | GO:0042545: cell wall modification | 2.86E-02 |
| 88 | GO:0042744: hydrogen peroxide catabolic process | 3.76E-02 |
| 89 | GO:0006633: fatty acid biosynthetic process | 4.04E-02 |
| 90 | GO:0016036: cellular response to phosphate starvation | 4.11E-02 |
| 91 | GO:0006413: translational initiation | 4.11E-02 |
| 92 | GO:0045490: pectin catabolic process | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 8.25E-05 |
| 3 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 8.25E-05 |
| 4 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 8.25E-05 |
| 5 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 8.25E-05 |
| 6 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 8.25E-05 |
| 7 | GO:0004071: aspartate-ammonia ligase activity | 8.25E-05 |
| 8 | GO:0004853: uroporphyrinogen decarboxylase activity | 8.25E-05 |
| 9 | GO:0003735: structural constituent of ribosome | 1.11E-04 |
| 10 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.78E-04 |
| 11 | GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity | 1.97E-04 |
| 12 | GO:0010291: carotene beta-ring hydroxylase activity | 1.97E-04 |
| 13 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.97E-04 |
| 14 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.97E-04 |
| 15 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.97E-04 |
| 16 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 1.97E-04 |
| 17 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.29E-04 |
| 18 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.29E-04 |
| 19 | GO:0015035: protein disulfide oxidoreductase activity | 3.99E-04 |
| 20 | GO:0004550: nucleoside diphosphate kinase activity | 4.75E-04 |
| 21 | GO:0019843: rRNA binding | 5.12E-04 |
| 22 | GO:0015120: phosphoglycerate transmembrane transporter activity | 6.32E-04 |
| 23 | GO:0004845: uracil phosphoribosyltransferase activity | 6.32E-04 |
| 24 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.32E-04 |
| 25 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 7.76E-04 |
| 26 | GO:0016651: oxidoreductase activity, acting on NAD(P)H | 8.00E-04 |
| 27 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 8.00E-04 |
| 28 | GO:0004040: amidase activity | 8.00E-04 |
| 29 | GO:0031177: phosphopantetheine binding | 9.77E-04 |
| 30 | GO:0102483: scopolin beta-glucosidase activity | 1.01E-03 |
| 31 | GO:0004849: uridine kinase activity | 1.16E-03 |
| 32 | GO:0000035: acyl binding | 1.16E-03 |
| 33 | GO:0004124: cysteine synthase activity | 1.16E-03 |
| 34 | GO:0004126: cytidine deaminase activity | 1.16E-03 |
| 35 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.16E-03 |
| 36 | GO:0008422: beta-glucosidase activity | 1.52E-03 |
| 37 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.57E-03 |
| 38 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 2.02E-03 |
| 39 | GO:0008047: enzyme activator activity | 2.51E-03 |
| 40 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 2.77E-03 |
| 41 | GO:0008794: arsenate reductase (glutaredoxin) activity | 2.77E-03 |
| 42 | GO:0009055: electron carrier activity | 3.06E-03 |
| 43 | GO:0004650: polygalacturonase activity | 3.11E-03 |
| 44 | GO:0051119: sugar transmembrane transporter activity | 3.88E-03 |
| 45 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.36E-03 |
| 46 | GO:0005528: FK506 binding | 4.48E-03 |
| 47 | GO:0003964: RNA-directed DNA polymerase activity | 5.12E-03 |
| 48 | GO:0008514: organic anion transmembrane transporter activity | 6.13E-03 |
| 49 | GO:0047134: protein-disulfide reductase activity | 6.48E-03 |
| 50 | GO:0004791: thioredoxin-disulfide reductase activity | 7.57E-03 |
| 51 | GO:0048038: quinone binding | 8.33E-03 |
| 52 | GO:0005507: copper ion binding | 9.08E-03 |
| 53 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 9.12E-03 |
| 54 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.30E-02 |
| 55 | GO:0003993: acid phosphatase activity | 1.59E-02 |
| 56 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.05E-02 |
| 57 | GO:0045330: aspartyl esterase activity | 2.45E-02 |
| 58 | GO:0030599: pectinesterase activity | 2.80E-02 |
| 59 | GO:0030170: pyridoxal phosphate binding | 3.70E-02 |
| 60 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.89E-02 |
| 61 | GO:0015144: carbohydrate transmembrane transporter activity | 3.90E-02 |
| 62 | GO:0015297: antiporter activity | 4.18E-02 |
| 63 | GO:0005351: sugar:proton symporter activity | 4.25E-02 |
| 64 | GO:0003743: translation initiation factor activity | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 7.45E-20 |
| 4 | GO:0009570: chloroplast stroma | 1.47E-15 |
| 5 | GO:0009579: thylakoid | 4.77E-10 |
| 6 | GO:0009941: chloroplast envelope | 9.30E-09 |
| 7 | GO:0031977: thylakoid lumen | 1.50E-07 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 2.72E-07 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.98E-06 |
| 10 | GO:0005840: ribosome | 1.78E-05 |
| 11 | GO:0031225: anchored component of membrane | 6.55E-05 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 8.25E-05 |
| 13 | GO:0046658: anchored component of plasma membrane | 1.31E-04 |
| 14 | GO:0009505: plant-type cell wall | 2.06E-04 |
| 15 | GO:0009534: chloroplast thylakoid | 2.65E-04 |
| 16 | GO:0009509: chromoplast | 3.29E-04 |
| 17 | GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain | 8.00E-04 |
| 18 | GO:0048046: apoplast | 1.80E-03 |
| 19 | GO:0005763: mitochondrial small ribosomal subunit | 2.02E-03 |
| 20 | GO:0000311: plastid large ribosomal subunit | 3.03E-03 |
| 21 | GO:0000312: plastid small ribosomal subunit | 3.59E-03 |
| 22 | GO:0030095: chloroplast photosystem II | 3.59E-03 |
| 23 | GO:0009536: plastid | 4.30E-03 |
| 24 | GO:0042651: thylakoid membrane | 4.80E-03 |
| 25 | GO:0009654: photosystem II oxygen evolving complex | 4.80E-03 |
| 26 | GO:0015935: small ribosomal subunit | 5.12E-03 |
| 27 | GO:0019898: extrinsic component of membrane | 7.95E-03 |
| 28 | GO:0030529: intracellular ribonucleoprotein complex | 1.08E-02 |
| 29 | GO:0031969: chloroplast membrane | 1.12E-02 |
| 30 | GO:0015934: large ribosomal subunit | 1.44E-02 |
| 31 | GO:0005618: cell wall | 2.51E-02 |
| 32 | GO:0005747: mitochondrial respiratory chain complex I | 2.62E-02 |
| 33 | GO:0009706: chloroplast inner membrane | 2.93E-02 |
| 34 | GO:0005773: vacuole | 3.85E-02 |
| 35 | GO:0005802: trans-Golgi network | 4.71E-02 |