GO Enrichment Analysis of Co-expressed Genes with
AT3G26900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 3 | GO:0099131: ATP hydrolysis coupled ion transmembrane transport | 0.00E+00 |
| 4 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 7 | GO:0006412: translation | 1.01E-13 |
| 8 | GO:0032544: plastid translation | 5.00E-12 |
| 9 | GO:0042254: ribosome biogenesis | 6.33E-08 |
| 10 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.77E-06 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 3.20E-05 |
| 12 | GO:0009767: photosynthetic electron transport chain | 4.94E-05 |
| 13 | GO:0010027: thylakoid membrane organization | 5.09E-05 |
| 14 | GO:0015979: photosynthesis | 2.04E-04 |
| 15 | GO:0000476: maturation of 4.5S rRNA | 2.87E-04 |
| 16 | GO:0000967: rRNA 5'-end processing | 2.87E-04 |
| 17 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.87E-04 |
| 18 | GO:0043266: regulation of potassium ion transport | 2.87E-04 |
| 19 | GO:0000481: maturation of 5S rRNA | 2.87E-04 |
| 20 | GO:1904964: positive regulation of phytol biosynthetic process | 2.87E-04 |
| 21 | GO:0042371: vitamin K biosynthetic process | 2.87E-04 |
| 22 | GO:2000021: regulation of ion homeostasis | 2.87E-04 |
| 23 | GO:0034337: RNA folding | 2.87E-04 |
| 24 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.87E-04 |
| 25 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.87E-04 |
| 26 | GO:0060627: regulation of vesicle-mediated transport | 2.87E-04 |
| 27 | GO:0010206: photosystem II repair | 4.20E-04 |
| 28 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 6.30E-04 |
| 29 | GO:0034470: ncRNA processing | 6.30E-04 |
| 30 | GO:0009735: response to cytokinin | 9.48E-04 |
| 31 | GO:0010207: photosystem II assembly | 9.74E-04 |
| 32 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.02E-03 |
| 33 | GO:0006518: peptide metabolic process | 1.02E-03 |
| 34 | GO:0045493: xylan catabolic process | 1.02E-03 |
| 35 | GO:2001295: malonyl-CoA biosynthetic process | 1.02E-03 |
| 36 | GO:0009793: embryo development ending in seed dormancy | 1.06E-03 |
| 37 | GO:0080170: hydrogen peroxide transmembrane transport | 1.46E-03 |
| 38 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.46E-03 |
| 39 | GO:0055070: copper ion homeostasis | 1.46E-03 |
| 40 | GO:0007017: microtubule-based process | 1.47E-03 |
| 41 | GO:2000122: negative regulation of stomatal complex development | 1.96E-03 |
| 42 | GO:0030104: water homeostasis | 1.96E-03 |
| 43 | GO:0010037: response to carbon dioxide | 1.96E-03 |
| 44 | GO:0015976: carbon utilization | 1.96E-03 |
| 45 | GO:0015994: chlorophyll metabolic process | 1.96E-03 |
| 46 | GO:0000413: protein peptidyl-prolyl isomerization | 2.45E-03 |
| 47 | GO:0032543: mitochondrial translation | 2.50E-03 |
| 48 | GO:0006564: L-serine biosynthetic process | 2.50E-03 |
| 49 | GO:0010236: plastoquinone biosynthetic process | 2.50E-03 |
| 50 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.50E-03 |
| 51 | GO:0035434: copper ion transmembrane transport | 2.50E-03 |
| 52 | GO:0016123: xanthophyll biosynthetic process | 2.50E-03 |
| 53 | GO:0006465: signal peptide processing | 2.50E-03 |
| 54 | GO:0009247: glycolipid biosynthetic process | 2.50E-03 |
| 55 | GO:0009658: chloroplast organization | 2.56E-03 |
| 56 | GO:0016554: cytidine to uridine editing | 3.08E-03 |
| 57 | GO:0032973: amino acid export | 3.08E-03 |
| 58 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 3.08E-03 |
| 59 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.08E-03 |
| 60 | GO:0010190: cytochrome b6f complex assembly | 3.08E-03 |
| 61 | GO:0010405: arabinogalactan protein metabolic process | 3.08E-03 |
| 62 | GO:0006751: glutathione catabolic process | 3.08E-03 |
| 63 | GO:0006810: transport | 3.21E-03 |
| 64 | GO:0000302: response to reactive oxygen species | 3.26E-03 |
| 65 | GO:1901259: chloroplast rRNA processing | 3.71E-03 |
| 66 | GO:0042372: phylloquinone biosynthetic process | 3.71E-03 |
| 67 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.71E-03 |
| 68 | GO:0048280: vesicle fusion with Golgi apparatus | 3.71E-03 |
| 69 | GO:0010019: chloroplast-nucleus signaling pathway | 3.71E-03 |
| 70 | GO:0009955: adaxial/abaxial pattern specification | 3.71E-03 |
| 71 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 4.38E-03 |
| 72 | GO:0009645: response to low light intensity stimulus | 4.38E-03 |
| 73 | GO:0009772: photosynthetic electron transport in photosystem II | 4.38E-03 |
| 74 | GO:0043090: amino acid import | 4.38E-03 |
| 75 | GO:0019375: galactolipid biosynthetic process | 5.08E-03 |
| 76 | GO:0032508: DNA duplex unwinding | 5.08E-03 |
| 77 | GO:0042744: hydrogen peroxide catabolic process | 5.34E-03 |
| 78 | GO:0009790: embryo development | 5.51E-03 |
| 79 | GO:0015995: chlorophyll biosynthetic process | 5.54E-03 |
| 80 | GO:0017004: cytochrome complex assembly | 5.82E-03 |
| 81 | GO:0006633: fatty acid biosynthetic process | 6.05E-03 |
| 82 | GO:0018298: protein-chromophore linkage | 6.14E-03 |
| 83 | GO:0080144: amino acid homeostasis | 6.60E-03 |
| 84 | GO:0009051: pentose-phosphate shunt, oxidative branch | 6.60E-03 |
| 85 | GO:0009407: toxin catabolic process | 6.77E-03 |
| 86 | GO:0007568: aging | 7.10E-03 |
| 87 | GO:1900865: chloroplast RNA modification | 7.41E-03 |
| 88 | GO:0034599: cellular response to oxidative stress | 8.14E-03 |
| 89 | GO:0009409: response to cold | 8.25E-03 |
| 90 | GO:0006896: Golgi to vacuole transport | 8.26E-03 |
| 91 | GO:0043069: negative regulation of programmed cell death | 8.26E-03 |
| 92 | GO:0030001: metal ion transport | 8.87E-03 |
| 93 | GO:0006415: translational termination | 9.14E-03 |
| 94 | GO:0009807: lignan biosynthetic process | 9.14E-03 |
| 95 | GO:0019684: photosynthesis, light reaction | 9.14E-03 |
| 96 | GO:0018119: peptidyl-cysteine S-nitrosylation | 9.14E-03 |
| 97 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.01E-02 |
| 98 | GO:0010628: positive regulation of gene expression | 1.10E-02 |
| 99 | GO:0006006: glucose metabolic process | 1.10E-02 |
| 100 | GO:0009636: response to toxic substance | 1.13E-02 |
| 101 | GO:0010143: cutin biosynthetic process | 1.20E-02 |
| 102 | GO:0042538: hyperosmotic salinity response | 1.26E-02 |
| 103 | GO:0010030: positive regulation of seed germination | 1.30E-02 |
| 104 | GO:0000027: ribosomal large subunit assembly | 1.51E-02 |
| 105 | GO:0006418: tRNA aminoacylation for protein translation | 1.62E-02 |
| 106 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.62E-02 |
| 107 | GO:0048511: rhythmic process | 1.73E-02 |
| 108 | GO:0006012: galactose metabolic process | 1.96E-02 |
| 109 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.96E-02 |
| 110 | GO:0009306: protein secretion | 2.08E-02 |
| 111 | GO:0042147: retrograde transport, endosome to Golgi | 2.21E-02 |
| 112 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.21E-02 |
| 113 | GO:0034220: ion transmembrane transport | 2.33E-02 |
| 114 | GO:0042631: cellular response to water deprivation | 2.33E-02 |
| 115 | GO:0006814: sodium ion transport | 2.59E-02 |
| 116 | GO:0042752: regulation of circadian rhythm | 2.59E-02 |
| 117 | GO:0006623: protein targeting to vacuole | 2.72E-02 |
| 118 | GO:0071554: cell wall organization or biogenesis | 2.86E-02 |
| 119 | GO:0002229: defense response to oomycetes | 2.86E-02 |
| 120 | GO:0006891: intra-Golgi vesicle-mediated transport | 2.86E-02 |
| 121 | GO:0010583: response to cyclopentenone | 3.00E-02 |
| 122 | GO:0030163: protein catabolic process | 3.13E-02 |
| 123 | GO:0009828: plant-type cell wall loosening | 3.28E-02 |
| 124 | GO:0006508: proteolysis | 3.89E-02 |
| 125 | GO:0042128: nitrate assimilation | 4.02E-02 |
| 126 | GO:0006888: ER to Golgi vesicle-mediated transport | 4.17E-02 |
| 127 | GO:0010411: xyloglucan metabolic process | 4.17E-02 |
| 128 | GO:0009817: defense response to fungus, incompatible interaction | 4.49E-02 |
| 129 | GO:0009631: cold acclimation | 4.97E-02 |
| 130 | GO:0010119: regulation of stomatal movement | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 3 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 4 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0005048: signal sequence binding | 0.00E+00 |
| 6 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 6.68E-17 |
| 8 | GO:0003735: structural constituent of ribosome | 4.08E-16 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.03E-08 |
| 10 | GO:0005528: FK506 binding | 3.44E-06 |
| 11 | GO:0016851: magnesium chelatase activity | 3.03E-05 |
| 12 | GO:0004130: cytochrome-c peroxidase activity | 1.25E-04 |
| 13 | GO:0008200: ion channel inhibitor activity | 1.25E-04 |
| 14 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.71E-04 |
| 15 | GO:0051920: peroxiredoxin activity | 1.71E-04 |
| 16 | GO:0016209: antioxidant activity | 2.83E-04 |
| 17 | GO:0080132: fatty acid alpha-hydroxylase activity | 2.87E-04 |
| 18 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 6.30E-04 |
| 19 | GO:0010283: pinoresinol reductase activity | 6.30E-04 |
| 20 | GO:0047746: chlorophyllase activity | 6.30E-04 |
| 21 | GO:0003839: gamma-glutamylcyclotransferase activity | 6.30E-04 |
| 22 | GO:0004617: phosphoglycerate dehydrogenase activity | 6.30E-04 |
| 23 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 6.30E-04 |
| 24 | GO:0004222: metalloendopeptidase activity | 9.10E-04 |
| 25 | GO:0019829: cation-transporting ATPase activity | 1.02E-03 |
| 26 | GO:0050734: hydroxycinnamoyltransferase activity | 1.02E-03 |
| 27 | GO:0002161: aminoacyl-tRNA editing activity | 1.02E-03 |
| 28 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.02E-03 |
| 29 | GO:0004075: biotin carboxylase activity | 1.02E-03 |
| 30 | GO:0033897: ribonuclease T2 activity | 1.02E-03 |
| 31 | GO:0030267: glyoxylate reductase (NADP) activity | 1.02E-03 |
| 32 | GO:0016531: copper chaperone activity | 1.02E-03 |
| 33 | GO:0035250: UDP-galactosyltransferase activity | 1.46E-03 |
| 34 | GO:0016149: translation release factor activity, codon specific | 1.46E-03 |
| 35 | GO:0043023: ribosomal large subunit binding | 1.46E-03 |
| 36 | GO:0008097: 5S rRNA binding | 1.46E-03 |
| 37 | GO:0008508: bile acid:sodium symporter activity | 1.46E-03 |
| 38 | GO:0043495: protein anchor | 1.96E-03 |
| 39 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.96E-03 |
| 40 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.96E-03 |
| 41 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.96E-03 |
| 42 | GO:0004659: prenyltransferase activity | 1.96E-03 |
| 43 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.96E-03 |
| 44 | GO:0016836: hydro-lyase activity | 1.96E-03 |
| 45 | GO:0003989: acetyl-CoA carboxylase activity | 2.50E-03 |
| 46 | GO:0004601: peroxidase activity | 2.56E-03 |
| 47 | GO:0016688: L-ascorbate peroxidase activity | 3.08E-03 |
| 48 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 3.08E-03 |
| 49 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 3.71E-03 |
| 50 | GO:0005200: structural constituent of cytoskeleton | 4.19E-03 |
| 51 | GO:0019899: enzyme binding | 4.38E-03 |
| 52 | GO:0043295: glutathione binding | 4.38E-03 |
| 53 | GO:0016168: chlorophyll binding | 4.97E-03 |
| 54 | GO:0004033: aldo-keto reductase (NADP) activity | 5.08E-03 |
| 55 | GO:0008312: 7S RNA binding | 5.08E-03 |
| 56 | GO:0004034: aldose 1-epimerase activity | 5.08E-03 |
| 57 | GO:0004252: serine-type endopeptidase activity | 5.17E-03 |
| 58 | GO:0005375: copper ion transmembrane transporter activity | 5.82E-03 |
| 59 | GO:0008236: serine-type peptidase activity | 5.83E-03 |
| 60 | GO:0003924: GTPase activity | 6.44E-03 |
| 61 | GO:0003747: translation release factor activity | 6.60E-03 |
| 62 | GO:0016491: oxidoreductase activity | 7.81E-03 |
| 63 | GO:0004364: glutathione transferase activity | 9.65E-03 |
| 64 | GO:0008378: galactosyltransferase activity | 1.01E-02 |
| 65 | GO:0004521: endoribonuclease activity | 1.01E-02 |
| 66 | GO:0004565: beta-galactosidase activity | 1.10E-02 |
| 67 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 1.10E-02 |
| 68 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.10E-02 |
| 69 | GO:0004089: carbonate dehydratase activity | 1.10E-02 |
| 70 | GO:0031409: pigment binding | 1.40E-02 |
| 71 | GO:0008324: cation transmembrane transporter activity | 1.62E-02 |
| 72 | GO:0043424: protein histidine kinase binding | 1.62E-02 |
| 73 | GO:0030570: pectate lyase activity | 1.96E-02 |
| 74 | GO:0022891: substrate-specific transmembrane transporter activity | 1.96E-02 |
| 75 | GO:0004812: aminoacyl-tRNA ligase activity | 2.21E-02 |
| 76 | GO:0016758: transferase activity, transferring hexosyl groups | 2.36E-02 |
| 77 | GO:0030246: carbohydrate binding | 2.39E-02 |
| 78 | GO:0016853: isomerase activity | 2.59E-02 |
| 79 | GO:0005525: GTP binding | 3.21E-02 |
| 80 | GO:0008237: metallopeptidase activity | 3.42E-02 |
| 81 | GO:0016597: amino acid binding | 3.57E-02 |
| 82 | GO:0016413: O-acetyltransferase activity | 3.57E-02 |
| 83 | GO:0015250: water channel activity | 3.72E-02 |
| 84 | GO:0005509: calcium ion binding | 3.86E-02 |
| 85 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.49E-02 |
| 86 | GO:0015238: drug transmembrane transporter activity | 4.65E-02 |
| 87 | GO:0008168: methyltransferase activity | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.68E-57 |
| 4 | GO:0009941: chloroplast envelope | 8.49E-32 |
| 5 | GO:0009570: chloroplast stroma | 1.90E-31 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 8.06E-25 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 3.62E-20 |
| 8 | GO:0009534: chloroplast thylakoid | 4.53E-19 |
| 9 | GO:0009579: thylakoid | 1.58E-16 |
| 10 | GO:0005840: ribosome | 2.63E-14 |
| 11 | GO:0031977: thylakoid lumen | 5.00E-13 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 4.66E-06 |
| 13 | GO:0010007: magnesium chelatase complex | 1.35E-05 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.42E-05 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 1.16E-04 |
| 16 | GO:0009536: plastid | 1.87E-04 |
| 17 | GO:0043674: columella | 2.87E-04 |
| 18 | GO:0009782: photosystem I antenna complex | 2.87E-04 |
| 19 | GO:0019898: extrinsic component of membrane | 3.27E-04 |
| 20 | GO:0016020: membrane | 3.65E-04 |
| 21 | GO:0045298: tubulin complex | 4.20E-04 |
| 22 | GO:0080085: signal recognition particle, chloroplast targeting | 6.30E-04 |
| 23 | GO:0000311: plastid large ribosomal subunit | 7.66E-04 |
| 24 | GO:0031969: chloroplast membrane | 7.84E-04 |
| 25 | GO:0000312: plastid small ribosomal subunit | 9.74E-04 |
| 26 | GO:0030095: chloroplast photosystem II | 9.74E-04 |
| 27 | GO:0010287: plastoglobule | 4.23E-03 |
| 28 | GO:0042807: central vacuole | 4.38E-03 |
| 29 | GO:0012507: ER to Golgi transport vesicle membrane | 5.08E-03 |
| 30 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 5.82E-03 |
| 31 | GO:0005763: mitochondrial small ribosomal subunit | 6.60E-03 |
| 32 | GO:0015934: large ribosomal subunit | 7.10E-03 |
| 33 | GO:0032040: small-subunit processome | 1.01E-02 |
| 34 | GO:0030076: light-harvesting complex | 1.30E-02 |
| 35 | GO:0042651: thylakoid membrane | 1.62E-02 |
| 36 | GO:0022625: cytosolic large ribosomal subunit | 1.67E-02 |
| 37 | GO:0015935: small ribosomal subunit | 1.73E-02 |
| 38 | GO:0009706: chloroplast inner membrane | 1.94E-02 |
| 39 | GO:0016021: integral component of membrane | 2.21E-02 |
| 40 | GO:0009523: photosystem II | 2.72E-02 |
| 41 | GO:0016592: mediator complex | 3.00E-02 |
| 42 | GO:0009705: plant-type vacuole membrane | 3.35E-02 |
| 43 | GO:0009295: nucleoid | 3.42E-02 |
| 44 | GO:0022627: cytosolic small ribosomal subunit | 4.42E-02 |
| 45 | GO:0009707: chloroplast outer membrane | 4.49E-02 |