co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G26710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006223: uracil salvage	0.00E+00
2	GO:0042820: vitamin B6 catabolic process	0.00E+00
3	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
4	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
9	GO:0015995: chlorophyll biosynthetic process	1.59E-15
10	GO:0015979: photosynthesis	9.05E-14
11	GO:0009735: response to cytokinin	2.87E-09
12	GO:0090391: granum assembly	9.39E-09
13	GO:0006782: protoporphyrinogen IX biosynthetic process	1.22E-07
14	GO:0010196: nonphotochemical quenching	1.72E-06
15	GO:0032544: plastid translation	3.84E-06
16	GO:0006783: heme biosynthetic process	5.40E-06
17	GO:0051085: chaperone mediated protein folding requiring cofactor	1.50E-05
18	GO:0010027: thylakoid membrane organization	1.66E-05
19	GO:0009658: chloroplast organization	2.05E-05
20	GO:0031365: N-terminal protein amino acid modification	4.46E-05
21	GO:0006412: translation	6.00E-05
22	GO:1901259: chloroplast rRNA processing	9.18E-05
23	GO:0009772: photosynthetic electron transport in photosystem II	1.22E-04
24	GO:0009443: pyridoxal 5'-phosphate salvage	1.93E-04
25	GO:0071277: cellular response to calcium ion	1.93E-04
26	GO:1904966: positive regulation of vitamin E biosynthetic process	1.93E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	1.93E-04
28	GO:0042371: vitamin K biosynthetic process	1.93E-04
29	GO:0043686: co-translational protein modification	1.93E-04
30	GO:1902458: positive regulation of stomatal opening	1.93E-04
31	GO:0034337: RNA folding	1.93E-04
32	GO:0006779: porphyrin-containing compound biosynthetic process	2.82E-04
33	GO:0042742: defense response to bacterium	3.84E-04
34	GO:2000071: regulation of defense response by callose deposition	4.33E-04
35	GO:0080183: response to photooxidative stress	4.33E-04
36	GO:0006729: tetrahydrobiopterin biosynthetic process	4.33E-04
37	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.33E-04
38	GO:0006568: tryptophan metabolic process	4.33E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.33E-04
40	GO:0010020: chloroplast fission	5.65E-04
41	GO:0006457: protein folding	6.03E-04
42	GO:0071492: cellular response to UV-A	7.06E-04
43	GO:0006760: folic acid-containing compound metabolic process	7.06E-04
44	GO:0006228: UTP biosynthetic process	1.01E-03
45	GO:0006986: response to unfolded protein	1.01E-03
46	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.01E-03
47	GO:0006241: CTP biosynthetic process	1.01E-03
48	GO:0006165: nucleoside diphosphate phosphorylation	1.01E-03
49	GO:0006096: glycolytic process	1.30E-03
50	GO:0030007: cellular potassium ion homeostasis	1.34E-03
51	GO:0044206: UMP salvage	1.34E-03
52	GO:0046656: folic acid biosynthetic process	1.34E-03
53	GO:0006021: inositol biosynthetic process	1.34E-03
54	GO:0071486: cellular response to high light intensity	1.34E-03
55	GO:0006183: GTP biosynthetic process	1.34E-03
56	GO:0080167: response to karrikin	1.49E-03
57	GO:0043097: pyrimidine nucleoside salvage	1.70E-03
58	GO:0032543: mitochondrial translation	1.70E-03
59	GO:0010236: plastoquinone biosynthetic process	1.70E-03
60	GO:0045038: protein import into chloroplast thylakoid membrane	1.70E-03
61	GO:0032502: developmental process	1.98E-03
62	GO:0006796: phosphate-containing compound metabolic process	2.10E-03
63	GO:0046855: inositol phosphate dephosphorylation	2.10E-03
64	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.10E-03
65	GO:0006206: pyrimidine nucleobase metabolic process	2.10E-03
66	GO:0042372: phylloquinone biosynthetic process	2.52E-03
67	GO:0017148: negative regulation of translation	2.52E-03
68	GO:0046654: tetrahydrofolate biosynthetic process	2.52E-03
69	GO:0010555: response to mannitol	2.52E-03
70	GO:0071470: cellular response to osmotic stress	2.52E-03
71	GO:0042026: protein refolding	2.52E-03
72	GO:0006826: iron ion transport	2.96E-03
73	GO:0009627: systemic acquired resistance	2.98E-03
74	GO:0042255: ribosome assembly	3.43E-03
75	GO:0006353: DNA-templated transcription, termination	3.43E-03
76	GO:0009704: de-etiolation	3.43E-03
77	GO:2000070: regulation of response to water deprivation	3.43E-03
78	GO:0048564: photosystem I assembly	3.43E-03
79	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.43E-03
80	GO:0009642: response to light intensity	3.43E-03
81	GO:0015996: chlorophyll catabolic process	3.93E-03
82	GO:0007186: G-protein coupled receptor signaling pathway	3.93E-03
83	GO:0009657: plastid organization	3.93E-03
84	GO:0034765: regulation of ion transmembrane transport	4.44E-03
85	GO:0090333: regulation of stomatal closure	4.44E-03
86	GO:0009245: lipid A biosynthetic process	4.44E-03
87	GO:0034599: cellular response to oxidative stress	4.60E-03
88	GO:0031425: chloroplast RNA processing	4.99E-03
89	GO:0019538: protein metabolic process	5.55E-03
90	GO:0043085: positive regulation of catalytic activity	6.13E-03
91	GO:0009773: photosynthetic electron transport in photosystem I	6.13E-03
92	GO:0009682: induced systemic resistance	6.13E-03
93	GO:0045037: protein import into chloroplast stroma	6.73E-03
94	GO:0006790: sulfur compound metabolic process	6.73E-03
95	GO:0006006: glucose metabolic process	7.36E-03
96	GO:0010207: photosystem II assembly	8.01E-03
97	GO:0019253: reductive pentose-phosphate cycle	8.01E-03
98	GO:0019853: L-ascorbic acid biosynthetic process	8.67E-03
99	GO:0010039: response to iron ion	8.67E-03
100	GO:0046854: phosphatidylinositol phosphorylation	8.67E-03
101	GO:0045454: cell redox homeostasis	9.48E-03
102	GO:0019344: cysteine biosynthetic process	1.01E-02
103	GO:0009116: nucleoside metabolic process	1.01E-02
104	GO:0007017: microtubule-based process	1.08E-02
105	GO:0051260: protein homooligomerization	1.15E-02
106	GO:0061077: chaperone-mediated protein folding	1.15E-02
107	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.23E-02
108	GO:0007005: mitochondrion organization	1.23E-02
109	GO:0009411: response to UV	1.31E-02
110	GO:0016117: carotenoid biosynthetic process	1.47E-02
111	GO:0042335: cuticle development	1.55E-02
112	GO:0000413: protein peptidyl-prolyl isomerization	1.55E-02
113	GO:0010118: stomatal movement	1.55E-02
114	GO:0009790: embryo development	1.59E-02
115	GO:0006662: glycerol ether metabolic process	1.63E-02
116	GO:0010182: sugar mediated signaling pathway	1.63E-02
117	GO:0009741: response to brassinosteroid	1.63E-02
118	GO:0015986: ATP synthesis coupled proton transport	1.72E-02
119	GO:0006633: fatty acid biosynthetic process	1.72E-02
120	GO:0010183: pollen tube guidance	1.81E-02
121	GO:0055114: oxidation-reduction process	1.88E-02
122	GO:0002229: defense response to oomycetes	1.90E-02
123	GO:0010583: response to cyclopentenone	1.99E-02
124	GO:0010286: heat acclimation	2.27E-02
125	GO:0071805: potassium ion transmembrane transport	2.27E-02
126	GO:0010029: regulation of seed germination	2.57E-02
127	GO:0015031: protein transport	2.66E-02
128	GO:0009409: response to cold	2.92E-02
129	GO:0018298: protein-chromophore linkage	2.98E-02
130	GO:0008219: cell death	2.98E-02
131	GO:0042254: ribosome biogenesis	2.98E-02
132	GO:0010119: regulation of stomatal movement	3.31E-02
133	GO:0055085: transmembrane transport	3.43E-02
134	GO:0009867: jasmonic acid mediated signaling pathway	3.53E-02
135	GO:0030001: metal ion transport	3.87E-02
136	GO:0006839: mitochondrial transport	3.87E-02
137	GO:0042542: response to hydrogen peroxide	4.11E-02
138	GO:0009644: response to high light intensity	4.47E-02
139	GO:0031347: regulation of defense response	4.84E-02
140	GO:0006812: cation transport	4.96E-02
141	GO:0009846: pollen germination	4.96E-02
142	GO:0042538: hyperosmotic salinity response	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
2	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
3	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
6	GO:0051738: xanthophyll binding	0.00E+00
7	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
8	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
9	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
10	GO:0015269: calcium-activated potassium channel activity	0.00E+00
11	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
12	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
13	GO:0016851: magnesium chelatase activity	1.50E-05
14	GO:0003735: structural constituent of ribosome	2.86E-05
15	GO:0019843: rRNA binding	3.55E-05
16	GO:0022891: substrate-specific transmembrane transporter activity	7.56E-05
17	GO:0047326: inositol tetrakisphosphate 5-kinase activity	1.93E-04
18	GO:0042586: peptide deformylase activity	1.93E-04
19	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.93E-04
20	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	1.93E-04
21	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	1.93E-04
22	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.93E-04
23	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.93E-04
24	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.93E-04
25	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.93E-04
26	GO:0000824: inositol tetrakisphosphate 3-kinase activity	1.93E-04
27	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.93E-04
28	GO:0051082: unfolded protein binding	2.33E-04
29	GO:0016168: chlorophyll binding	2.97E-04
30	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.33E-04
31	GO:0016630: protochlorophyllide reductase activity	4.33E-04
32	GO:0004150: dihydroneopterin aldolase activity	4.33E-04
33	GO:0102083: 7,8-dihydromonapterin aldolase activity	4.33E-04
34	GO:0052832: inositol monophosphate 3-phosphatase activity	4.33E-04
35	GO:0004312: fatty acid synthase activity	4.33E-04
36	GO:0000774: adenyl-nucleotide exchange factor activity	4.33E-04
37	GO:0008934: inositol monophosphate 1-phosphatase activity	4.33E-04
38	GO:0052833: inositol monophosphate 4-phosphatase activity	4.33E-04
39	GO:0070402: NADPH binding	7.06E-04
40	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.06E-04
41	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.06E-04
42	GO:0051087: chaperone binding	8.55E-04
43	GO:0043424: protein histidine kinase binding	8.55E-04
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.88E-04
45	GO:0004550: nucleoside diphosphate kinase activity	1.01E-03
46	GO:0043023: ribosomal large subunit binding	1.01E-03
47	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.01E-03
48	GO:0043495: protein anchor	1.34E-03
49	GO:0004659: prenyltransferase activity	1.34E-03
50	GO:0004845: uracil phosphoribosyltransferase activity	1.34E-03
51	GO:0003959: NADPH dehydrogenase activity	1.70E-03
52	GO:0004040: amidase activity	1.70E-03
53	GO:0031177: phosphopantetheine binding	2.10E-03
54	GO:0016462: pyrophosphatase activity	2.10E-03
55	GO:0015271: outward rectifier potassium channel activity	2.10E-03
56	GO:0004849: uridine kinase activity	2.52E-03
57	GO:0000035: acyl binding	2.52E-03
58	GO:0051920: peroxiredoxin activity	2.52E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.52E-03
60	GO:0019899: enzyme binding	2.96E-03
61	GO:0008235: metalloexopeptidase activity	2.96E-03
62	GO:0004427: inorganic diphosphatase activity	2.96E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	3.43E-03
64	GO:0016209: antioxidant activity	3.43E-03
65	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.43E-03
66	GO:0005267: potassium channel activity	3.93E-03
67	GO:0030955: potassium ion binding	4.99E-03
68	GO:0004743: pyruvate kinase activity	4.99E-03
69	GO:0008047: enzyme activator activity	5.55E-03
70	GO:0004601: peroxidase activity	5.73E-03
71	GO:0004177: aminopeptidase activity	6.13E-03
72	GO:0044183: protein binding involved in protein folding	6.13E-03
73	GO:0031072: heat shock protein binding	7.36E-03
74	GO:0004650: polygalacturonase activity	9.93E-03
75	GO:0005528: FK506 binding	1.01E-02
76	GO:0005216: ion channel activity	1.08E-02
77	GO:0015035: protein disulfide oxidoreductase activity	1.12E-02
78	GO:0004176: ATP-dependent peptidase activity	1.15E-02
79	GO:0003727: single-stranded RNA binding	1.39E-02
80	GO:0047134: protein-disulfide reductase activity	1.47E-02
81	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.63E-02
82	GO:0005509: calcium ion binding	1.65E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	1.72E-02
84	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.08E-02
85	GO:0008237: metallopeptidase activity	2.27E-02
86	GO:0005200: structural constituent of cytoskeleton	2.27E-02
87	GO:0008483: transaminase activity	2.27E-02
88	GO:0042802: identical protein binding	2.40E-02
89	GO:0016491: oxidoreductase activity	2.80E-02
90	GO:0000287: magnesium ion binding	2.87E-02
91	GO:0003729: mRNA binding	3.35E-02
92	GO:0003746: translation elongation factor activity	3.53E-02
93	GO:0050661: NADP binding	3.87E-02
94	GO:0051537: 2 iron, 2 sulfur cluster binding	4.47E-02
95	GO:0005198: structural molecule activity	4.59E-02
96	GO:0051287: NAD binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	2.95E-68
3	GO:0009570: chloroplast stroma	9.46E-47
4	GO:0009941: chloroplast envelope	5.45E-33
5	GO:0009579: thylakoid	7.64E-31
6	GO:0009535: chloroplast thylakoid membrane	2.57E-27
7	GO:0009534: chloroplast thylakoid	2.00E-17
8	GO:0031977: thylakoid lumen	7.45E-11
9	GO:0009543: chloroplast thylakoid lumen	1.43E-10
10	GO:0009654: photosystem II oxygen evolving complex	1.90E-08
11	GO:0005840: ribosome	2.15E-07
12	GO:0009536: plastid	3.97E-06
13	GO:0019898: extrinsic component of membrane	6.52E-06
14	GO:0010319: stromule	1.30E-05
15	GO:0009532: plastid stroma	5.73E-05
16	GO:0009523: photosystem II	1.50E-04
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.93E-04
18	GO:0009706: chloroplast inner membrane	2.33E-04
19	GO:0009528: plastid inner membrane	7.06E-04
20	GO:0010007: magnesium chelatase complex	7.06E-04
21	GO:0042651: thylakoid membrane	8.55E-04
22	GO:0015935: small ribosomal subunit	9.35E-04
23	GO:0009527: plastid outer membrane	1.34E-03
24	GO:0009517: PSII associated light-harvesting complex II	1.34E-03
25	GO:0031969: chloroplast membrane	1.49E-03
26	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.10E-03
27	GO:0009538: photosystem I reaction center	3.43E-03
28	GO:0009539: photosystem II reaction center	3.93E-03
29	GO:0045298: tubulin complex	4.44E-03
30	GO:0000311: plastid large ribosomal subunit	6.73E-03
31	GO:0032040: small-subunit processome	6.73E-03
32	GO:0009508: plastid chromosome	7.36E-03
33	GO:0000312: plastid small ribosomal subunit	8.01E-03
34	GO:0030095: chloroplast photosystem II	8.01E-03
35	GO:0010287: plastoglobule	1.29E-02
36	GO:0005759: mitochondrial matrix	1.72E-02
37	GO:0048046: apoplast	1.82E-02
38	GO:0005778: peroxisomal membrane	2.27E-02
39	GO:0009295: nucleoid	2.27E-02
40	GO:0022626: cytosolic ribosome	2.42E-02
41	GO:0030529: intracellular ribonucleoprotein complex	2.47E-02
42	GO:0009707: chloroplast outer membrane	2.98E-02
43	GO:0015934: large ribosomal subunit	3.31E-02
44	GO:0090406: pollen tube	4.23E-02
45	GO:0016020: membrane	4.71E-02