Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G25920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
6GO:1901918: negative regulation of exoribonuclease activity0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:0042493: response to drug0.00E+00
10GO:0033494: ferulate metabolic process0.00E+00
11GO:0042371: vitamin K biosynthetic process0.00E+00
12GO:1901698: response to nitrogen compound0.00E+00
13GO:2000121: regulation of removal of superoxide radicals0.00E+00
14GO:0061635: regulation of protein complex stability0.00E+00
15GO:0006399: tRNA metabolic process0.00E+00
16GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
17GO:0042821: pyridoxal biosynthetic process0.00E+00
18GO:0005996: monosaccharide metabolic process0.00E+00
19GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
20GO:1902458: positive regulation of stomatal opening0.00E+00
21GO:0034337: RNA folding0.00E+00
22GO:0042593: glucose homeostasis0.00E+00
23GO:0006223: uracil salvage0.00E+00
24GO:0018023: peptidyl-lysine trimethylation0.00E+00
25GO:0006429: leucyl-tRNA aminoacylation0.00E+00
26GO:0015979: photosynthesis5.84E-21
27GO:0015995: chlorophyll biosynthetic process8.68E-21
28GO:0032544: plastid translation2.50E-17
29GO:0009658: chloroplast organization1.32E-12
30GO:0009735: response to cytokinin4.47E-11
31GO:0006412: translation7.22E-11
32GO:0010207: photosystem II assembly4.43E-10
33GO:0010027: thylakoid membrane organization2.02E-09
34GO:0006782: protoporphyrinogen IX biosynthetic process8.56E-08
35GO:0042254: ribosome biogenesis1.16E-07
36GO:0009773: photosynthetic electron transport in photosystem I1.48E-07
37GO:0090391: granum assembly2.08E-06
38GO:0006633: fatty acid biosynthetic process1.72E-05
39GO:0006783: heme biosynthetic process3.42E-05
40GO:0010206: photosystem II repair3.42E-05
41GO:0006779: porphyrin-containing compound biosynthetic process4.92E-05
42GO:0032543: mitochondrial translation5.01E-05
43GO:0045038: protein import into chloroplast thylakoid membrane5.01E-05
44GO:0055114: oxidation-reduction process6.54E-05
45GO:0010275: NAD(P)H dehydrogenase complex assembly7.33E-05
46GO:0018026: peptidyl-lysine monomethylation7.33E-05
47GO:1902326: positive regulation of chlorophyll biosynthetic process7.33E-05
48GO:1903426: regulation of reactive oxygen species biosynthetic process7.33E-05
49GO:0030388: fructose 1,6-bisphosphate metabolic process7.33E-05
50GO:0018119: peptidyl-cysteine S-nitrosylation9.14E-05
51GO:0009409: response to cold1.12E-04
52GO:0010019: chloroplast-nucleus signaling pathway1.39E-04
53GO:1901259: chloroplast rRNA processing1.39E-04
54GO:0019253: reductive pentose-phosphate cycle1.90E-04
55GO:0009772: photosynthetic electron transport in photosystem II2.04E-04
56GO:0010196: nonphotochemical quenching2.04E-04
57GO:0006518: peptide metabolic process2.18E-04
58GO:0006000: fructose metabolic process2.18E-04
59GO:0042255: ribosome assembly2.82E-04
60GO:0032502: developmental process2.87E-04
61GO:0009657: plastid organization3.76E-04
62GO:0055070: copper ion homeostasis4.22E-04
63GO:2001141: regulation of RNA biosynthetic process4.22E-04
64GO:0016556: mRNA modification4.22E-04
65GO:0042742: defense response to bacterium4.93E-04
66GO:0006546: glycine catabolic process6.82E-04
67GO:0006183: GTP biosynthetic process6.82E-04
68GO:0045727: positive regulation of translation6.82E-04
69GO:0015976: carbon utilization6.82E-04
70GO:0000413: protein peptidyl-prolyl isomerization9.12E-04
71GO:0016123: xanthophyll biosynthetic process1.00E-03
72GO:0016024: CDP-diacylglycerol biosynthetic process1.08E-03
73GO:0006006: glucose metabolic process1.28E-03
74GO:0009767: photosynthetic electron transport chain1.28E-03
75GO:0045454: cell redox homeostasis1.32E-03
76GO:0010190: cytochrome b6f complex assembly1.38E-03
77GO:0006655: phosphatidylglycerol biosynthetic process1.38E-03
78GO:0042549: photosystem II stabilization1.38E-03
79GO:0071588: hydrogen peroxide mediated signaling pathway1.39E-03
80GO:0010729: positive regulation of hydrogen peroxide biosynthetic process1.39E-03
81GO:0043489: RNA stabilization1.39E-03
82GO:0006434: seryl-tRNA aminoacylation1.39E-03
83GO:0060627: regulation of vesicle-mediated transport1.39E-03
84GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process1.39E-03
85GO:1904966: positive regulation of vitamin E biosynthetic process1.39E-03
86GO:0071370: cellular response to gibberellin stimulus1.39E-03
87GO:0000481: maturation of 5S rRNA1.39E-03
88GO:1904964: positive regulation of phytol biosynthetic process1.39E-03
89GO:0071461: cellular response to redox state1.39E-03
90GO:0046520: sphingoid biosynthetic process1.39E-03
91GO:0000476: maturation of 4.5S rRNA1.39E-03
92GO:0009443: pyridoxal 5'-phosphate salvage1.39E-03
93GO:0000967: rRNA 5'-end processing1.39E-03
94GO:0009416: response to light stimulus1.64E-03
95GO:0010167: response to nitrate1.74E-03
96GO:0042372: phylloquinone biosynthetic process1.83E-03
97GO:0006636: unsaturated fatty acid biosynthetic process2.01E-03
98GO:0009645: response to low light intensity stimulus2.36E-03
99GO:0010444: guard mother cell differentiation2.36E-03
100GO:0006821: chloride transport2.36E-03
101GO:0009793: embryo development ending in seed dormancy2.50E-03
102GO:2000070: regulation of response to water deprivation2.95E-03
103GO:0006353: DNA-templated transcription, termination2.95E-03
104GO:0042128: nitrate assimilation3.02E-03
105GO:0034470: ncRNA processing3.09E-03
106GO:0043039: tRNA aminoacylation3.09E-03
107GO:1904143: positive regulation of carotenoid biosynthetic process3.09E-03
108GO:0006729: tetrahydrobiopterin biosynthetic process3.09E-03
109GO:0034755: iron ion transmembrane transport3.09E-03
110GO:0006521: regulation of cellular amino acid metabolic process3.09E-03
111GO:0080005: photosystem stoichiometry adjustment3.09E-03
112GO:0019388: galactose catabolic process3.09E-03
113GO:0010411: xyloglucan metabolic process3.28E-03
114GO:0006002: fructose 6-phosphate metabolic process3.62E-03
115GO:0071482: cellular response to light stimulus3.62E-03
116GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.75E-03
117GO:0009411: response to UV3.75E-03
118GO:0018298: protein-chromophore linkage3.84E-03
119GO:0009306: protein secretion4.18E-03
120GO:0016117: carotenoid biosynthetic process4.64E-03
121GO:0042335: cuticle development5.14E-03
122GO:0045493: xylan catabolic process5.16E-03
123GO:2001295: malonyl-CoA biosynthetic process5.16E-03
124GO:0006013: mannose metabolic process5.16E-03
125GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition5.16E-03
126GO:0015840: urea transport5.16E-03
127GO:0071705: nitrogen compound transport5.16E-03
128GO:0006954: inflammatory response5.16E-03
129GO:0010205: photoinhibition5.19E-03
130GO:1900865: chloroplast RNA modification5.19E-03
131GO:0080167: response to karrikin7.01E-03
132GO:0009073: aromatic amino acid family biosynthetic process7.07E-03
133GO:0043085: positive regulation of catalytic activity7.07E-03
134GO:0006352: DNA-templated transcription, initiation7.07E-03
135GO:0019684: photosynthesis, light reaction7.07E-03
136GO:0010731: protein glutathionylation7.57E-03
137GO:0006424: glutamyl-tRNA aminoacylation7.57E-03
138GO:0009152: purine ribonucleotide biosynthetic process7.57E-03
139GO:0046739: transport of virus in multicellular host7.57E-03
140GO:0046653: tetrahydrofolate metabolic process7.57E-03
141GO:0034059: response to anoxia7.57E-03
142GO:0009590: detection of gravity7.57E-03
143GO:0006241: CTP biosynthetic process7.57E-03
144GO:0080170: hydrogen peroxide transmembrane transport7.57E-03
145GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis7.57E-03
146GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity7.57E-03
147GO:0006165: nucleoside diphosphate phosphorylation7.57E-03
148GO:0006228: UTP biosynthetic process7.57E-03
149GO:1902476: chloride transmembrane transport7.57E-03
150GO:0009800: cinnamic acid biosynthetic process7.57E-03
151GO:0009052: pentose-phosphate shunt, non-oxidative branch7.57E-03
152GO:0009650: UV protection7.57E-03
153GO:0009647: skotomorphogenesis7.57E-03
154GO:0051513: regulation of monopolar cell growth7.57E-03
155GO:0009226: nucleotide-sugar biosynthetic process7.57E-03
156GO:0071484: cellular response to light intensity7.57E-03
157GO:0045037: protein import into chloroplast stroma8.13E-03
158GO:0015706: nitrate transport8.13E-03
159GO:0005986: sucrose biosynthetic process9.27E-03
160GO:0006094: gluconeogenesis9.27E-03
161GO:0009828: plant-type cell wall loosening9.57E-03
162GO:0006021: inositol biosynthetic process1.03E-02
163GO:0019464: glycine decarboxylation via glycine cleavage system1.03E-02
164GO:0009765: photosynthesis, light harvesting1.03E-02
165GO:0071249: cellular response to nitrate1.03E-02
166GO:0015994: chlorophyll metabolic process1.03E-02
167GO:0010037: response to carbon dioxide1.03E-02
168GO:0006808: regulation of nitrogen utilization1.03E-02
169GO:2000122: negative regulation of stomatal complex development1.03E-02
170GO:0044206: UMP salvage1.03E-02
171GO:0030104: water homeostasis1.03E-02
172GO:0010143: cutin biosynthetic process1.05E-02
173GO:0009664: plant-type cell wall organization1.17E-02
174GO:0010030: positive regulation of seed germination1.18E-02
175GO:0005985: sucrose metabolic process1.18E-02
176GO:0009790: embryo development1.27E-02
177GO:0006833: water transport1.32E-02
178GO:0006564: L-serine biosynthetic process1.33E-02
179GO:0010236: plastoquinone biosynthetic process1.33E-02
180GO:0009247: glycolipid biosynthetic process1.33E-02
181GO:0034052: positive regulation of plant-type hypersensitive response1.33E-02
182GO:0031365: N-terminal protein amino acid modification1.33E-02
183GO:0035434: copper ion transmembrane transport1.33E-02
184GO:0006461: protein complex assembly1.33E-02
185GO:0016120: carotene biosynthetic process1.33E-02
186GO:0043097: pyrimidine nucleoside salvage1.33E-02
187GO:0006508: proteolysis1.38E-02
188GO:0019344: cysteine biosynthetic process1.47E-02
189GO:0009768: photosynthesis, light harvesting in photosystem I1.63E-02
190GO:0006418: tRNA aminoacylation for protein translation1.63E-02
191GO:0009117: nucleotide metabolic process1.66E-02
192GO:0016554: cytidine to uridine editing1.66E-02
193GO:0010405: arabinogalactan protein metabolic process1.66E-02
194GO:0006559: L-phenylalanine catabolic process1.66E-02
195GO:0006206: pyrimidine nucleobase metabolic process1.66E-02
196GO:0006751: glutathione catabolic process1.66E-02
197GO:0032973: amino acid export1.66E-02
198GO:0018258: protein O-linked glycosylation via hydroxyproline1.66E-02
199GO:0046855: inositol phosphate dephosphorylation1.66E-02
200GO:1902456: regulation of stomatal opening1.66E-02
201GO:0042793: transcription from plastid promoter1.66E-02
202GO:0045490: pectin catabolic process1.69E-02
203GO:0006810: transport1.83E-02
204GO:0009612: response to mechanical stimulus2.02E-02
205GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.02E-02
206GO:0009955: adaxial/abaxial pattern specification2.02E-02
207GO:0017148: negative regulation of translation2.02E-02
208GO:0006694: steroid biosynthetic process2.02E-02
209GO:0010189: vitamin E biosynthetic process2.02E-02
210GO:0009854: oxidative photosynthetic carbon pathway2.02E-02
211GO:0010555: response to mannitol2.02E-02
212GO:0008380: RNA splicing2.29E-02
213GO:0009395: phospholipid catabolic process2.40E-02
214GO:0043090: amino acid import2.40E-02
215GO:0030497: fatty acid elongation2.40E-02
216GO:0006400: tRNA modification2.40E-02
217GO:0006614: SRP-dependent cotranslational protein targeting to membrane2.40E-02
218GO:0009610: response to symbiotic fungus2.40E-02
219GO:0050829: defense response to Gram-negative bacterium2.40E-02
220GO:0034599: cellular response to oxidative stress2.43E-02
221GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.54E-02
222GO:0030001: metal ion transport2.71E-02
223GO:0042631: cellular response to water deprivation2.75E-02
224GO:0080022: primary root development2.75E-02
225GO:0034220: ion transmembrane transport2.75E-02
226GO:0043068: positive regulation of programmed cell death2.80E-02
227GO:0048564: photosystem I assembly2.80E-02
228GO:0006605: protein targeting2.80E-02
229GO:0019375: galactolipid biosynthetic process2.80E-02
230GO:0032508: DNA duplex unwinding2.80E-02
231GO:0005978: glycogen biosynthetic process2.80E-02
232GO:0009819: drought recovery2.80E-02
233GO:0009642: response to light intensity2.80E-02
234GO:0009741: response to brassinosteroid2.96E-02
235GO:0010114: response to red light3.16E-02
236GO:0009699: phenylpropanoid biosynthetic process3.23E-02
237GO:0009932: cell tip growth3.23E-02
238GO:0022900: electron transport chain3.23E-02
239GO:0015996: chlorophyll catabolic process3.23E-02
240GO:0006526: arginine biosynthetic process3.23E-02
241GO:0007186: G-protein coupled receptor signaling pathway3.23E-02
242GO:0017004: cytochrome complex assembly3.23E-02
243GO:0009808: lignin metabolic process3.23E-02
244GO:0010497: plasmodesmata-mediated intercellular transport3.23E-02
245GO:0042546: cell wall biogenesis3.32E-02
246GO:0009826: unidimensional cell growth3.33E-02
247GO:0019252: starch biosynthetic process3.42E-02
248GO:0000302: response to reactive oxygen species3.66E-02
249GO:0080144: amino acid homeostasis3.67E-02
250GO:0009051: pentose-phosphate shunt, oxidative branch3.67E-02
251GO:0009245: lipid A biosynthetic process3.67E-02
252GO:0000373: Group II intron splicing3.67E-02
253GO:0009821: alkaloid biosynthetic process3.67E-02
254GO:0009638: phototropism4.13E-02
255GO:0031425: chloroplast RNA processing4.13E-02
256GO:0006397: mRNA processing4.34E-02
257GO:0009870: defense response signaling pathway, resistance gene-dependent4.62E-02
258GO:0006535: cysteine biosynthetic process from serine4.62E-02
259GO:0043069: negative regulation of programmed cell death4.62E-02
260GO:0006949: syncytium formation4.62E-02
261GO:0007623: circadian rhythm4.95E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
6GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
7GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
8GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
9GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
10GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
15GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
16GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
17GO:0046408: chlorophyll synthetase activity0.00E+00
18GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
19GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
20GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
21GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
22GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
23GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
24GO:0045435: lycopene epsilon cyclase activity0.00E+00
25GO:0004822: isoleucine-tRNA ligase activity0.00E+00
26GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
27GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
28GO:0043864: indoleacetamide hydrolase activity0.00E+00
29GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
30GO:0008887: glycerate kinase activity0.00E+00
31GO:0005048: signal sequence binding0.00E+00
32GO:0045550: geranylgeranyl reductase activity0.00E+00
33GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
34GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
35GO:0019843: rRNA binding1.84E-29
36GO:0003735: structural constituent of ribosome2.54E-13
37GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.78E-11
38GO:0005528: FK506 binding7.22E-08
39GO:0051920: peroxiredoxin activity4.43E-06
40GO:0016851: magnesium chelatase activity9.24E-06
41GO:0016209: antioxidant activity1.43E-05
42GO:0003959: NADPH dehydrogenase activity5.01E-05
43GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.33E-05
44GO:0016630: protochlorophyllide reductase activity7.33E-05
45GO:0008266: poly(U) RNA binding1.90E-04
46GO:0002161: aminoacyl-tRNA editing activity2.18E-04
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.18E-04
48GO:0051537: 2 iron, 2 sulfur cluster binding5.64E-04
49GO:0004045: aminoacyl-tRNA hydrolase activity6.82E-04
50GO:0016987: sigma factor activity6.82E-04
51GO:0016279: protein-lysine N-methyltransferase activity6.82E-04
52GO:0001053: plastid sigma factor activity6.82E-04
53GO:0003727: single-stranded RNA binding7.12E-04
54GO:0003989: acetyl-CoA carboxylase activity1.00E-03
55GO:0004040: amidase activity1.00E-03
56GO:0031072: heat shock protein binding1.28E-03
57GO:0016491: oxidoreductase activity1.35E-03
58GO:0008200: ion channel inhibitor activity1.38E-03
59GO:0004130: cytochrome-c peroxidase activity1.38E-03
60GO:0005247: voltage-gated chloride channel activity1.38E-03
61GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.38E-03
62GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity1.39E-03
63GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity1.39E-03
64GO:0046906: tetrapyrrole binding1.39E-03
65GO:0009374: biotin binding1.39E-03
66GO:0030794: (S)-coclaurine-N-methyltransferase activity1.39E-03
67GO:0015200: methylammonium transmembrane transporter activity1.39E-03
68GO:0004560: alpha-L-fucosidase activity1.39E-03
69GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity1.39E-03
70GO:0004828: serine-tRNA ligase activity1.39E-03
71GO:0080132: fatty acid alpha-hydroxylase activity1.39E-03
72GO:0004328: formamidase activity1.39E-03
73GO:0004655: porphobilinogen synthase activity1.39E-03
74GO:0010347: L-galactose-1-phosphate phosphatase activity1.39E-03
75GO:0009671: nitrate:proton symporter activity1.39E-03
76GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity1.39E-03
77GO:0045485: omega-6 fatty acid desaturase activity1.39E-03
78GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity1.39E-03
79GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity1.39E-03
80GO:0000170: sphingosine hydroxylase activity1.39E-03
81GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.83E-03
82GO:0019899: enzyme binding2.36E-03
83GO:0016168: chlorophyll binding2.77E-03
84GO:0004033: aldo-keto reductase (NADP) activity2.95E-03
85GO:0004047: aminomethyltransferase activity3.09E-03
86GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity3.09E-03
87GO:0004614: phosphoglucomutase activity3.09E-03
88GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity3.09E-03
89GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase3.09E-03
90GO:0052832: inositol monophosphate 3-phosphatase activity3.09E-03
91GO:0008883: glutamyl-tRNA reductase activity3.09E-03
92GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity3.09E-03
93GO:0042284: sphingolipid delta-4 desaturase activity3.09E-03
94GO:0008934: inositol monophosphate 1-phosphatase activity3.09E-03
95GO:0047746: chlorophyllase activity3.09E-03
96GO:0042389: omega-3 fatty acid desaturase activity3.09E-03
97GO:0052833: inositol monophosphate 4-phosphatase activity3.09E-03
98GO:0004618: phosphoglycerate kinase activity3.09E-03
99GO:0010297: heteropolysaccharide binding3.09E-03
100GO:0003839: gamma-glutamylcyclotransferase activity3.09E-03
101GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity3.09E-03
102GO:0009977: proton motive force dependent protein transmembrane transporter activity3.09E-03
103GO:0004617: phosphoglycerate dehydrogenase activity3.09E-03
104GO:0008967: phosphoglycolate phosphatase activity3.09E-03
105GO:0003938: IMP dehydrogenase activity3.09E-03
106GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water3.62E-03
107GO:0004324: ferredoxin-NADP+ reductase activity5.16E-03
108GO:0010277: chlorophyllide a oxygenase [overall] activity5.16E-03
109GO:0004075: biotin carboxylase activity5.16E-03
110GO:0016531: copper chaperone activity5.16E-03
111GO:0004751: ribose-5-phosphate isomerase activity5.16E-03
112GO:0045174: glutathione dehydrogenase (ascorbate) activity5.16E-03
113GO:0070330: aromatase activity5.16E-03
114GO:0030267: glyoxylate reductase (NADP) activity5.16E-03
115GO:0019829: cation-transporting ATPase activity5.16E-03
116GO:0017150: tRNA dihydrouridine synthase activity5.16E-03
117GO:0050734: hydroxycinnamoyltransferase activity5.16E-03
118GO:0045548: phenylalanine ammonia-lyase activity5.16E-03
119GO:0016742: hydroxymethyl-, formyl- and related transferase activity5.16E-03
120GO:0070402: NADPH binding5.16E-03
121GO:0004148: dihydrolipoyl dehydrogenase activity5.16E-03
122GO:0008864: formyltetrahydrofolate deformylase activity5.16E-03
123GO:0003993: acid phosphatase activity5.95E-03
124GO:0016762: xyloglucan:xyloglucosyl transferase activity7.46E-03
125GO:0016149: translation release factor activity, codon specific7.57E-03
126GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity7.57E-03
127GO:0004375: glycine dehydrogenase (decarboxylating) activity7.57E-03
128GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides7.57E-03
129GO:0004550: nucleoside diphosphate kinase activity7.57E-03
130GO:0043023: ribosomal large subunit binding7.57E-03
131GO:0008097: 5S rRNA binding7.57E-03
132GO:0035529: NADH pyrophosphatase activity7.57E-03
133GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor7.57E-03
134GO:0035250: UDP-galactosyltransferase activity7.57E-03
135GO:0004089: carbonate dehydratase activity9.27E-03
136GO:0005509: calcium ion binding1.01E-02
137GO:0009044: xylan 1,4-beta-xylosidase activity1.03E-02
138GO:0016836: hydro-lyase activity1.03E-02
139GO:0005253: anion channel activity1.03E-02
140GO:1990137: plant seed peroxidase activity1.03E-02
141GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.03E-02
142GO:0046556: alpha-L-arabinofuranosidase activity1.03E-02
143GO:0015204: urea transmembrane transporter activity1.03E-02
144GO:0004659: prenyltransferase activity1.03E-02
145GO:0043495: protein anchor1.03E-02
146GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.03E-02
147GO:0004845: uracil phosphoribosyltransferase activity1.03E-02
148GO:0004345: glucose-6-phosphate dehydrogenase activity1.03E-02
149GO:0051287: NAD binding1.10E-02
150GO:0016597: amino acid binding1.12E-02
151GO:0015250: water channel activity1.20E-02
152GO:0004601: peroxidase activity1.28E-02
153GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.32E-02
154GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.32E-02
155GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.32E-02
156GO:0031409: pigment binding1.32E-02
157GO:0030414: peptidase inhibitor activity1.33E-02
158GO:0018685: alkane 1-monooxygenase activity1.33E-02
159GO:0016788: hydrolase activity, acting on ester bonds1.33E-02
160GO:0009922: fatty acid elongase activity1.33E-02
161GO:0016773: phosphotransferase activity, alcohol group as acceptor1.33E-02
162GO:0008725: DNA-3-methyladenine glycosylase activity1.33E-02
163GO:0003690: double-stranded DNA binding1.37E-02
164GO:0016798: hydrolase activity, acting on glycosyl bonds1.49E-02
165GO:0003723: RNA binding1.60E-02
166GO:0031177: phosphopantetheine binding1.66E-02
167GO:1990714: hydroxyproline O-galactosyltransferase activity1.66E-02
168GO:0016208: AMP binding1.66E-02
169GO:0016462: pyrophosphatase activity1.66E-02
170GO:0016688: L-ascorbate peroxidase activity1.66E-02
171GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.66E-02
172GO:0008519: ammonium transmembrane transporter activity1.66E-02
173GO:0042578: phosphoric ester hydrolase activity1.66E-02
174GO:0004176: ATP-dependent peptidase activity1.79E-02
175GO:0009055: electron carrier activity1.88E-02
176GO:0004222: metalloendopeptidase activity1.92E-02
177GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.98E-02
178GO:0000035: acyl binding2.02E-02
179GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.02E-02
180GO:0004559: alpha-mannosidase activity2.02E-02
181GO:0051753: mannan synthase activity2.02E-02
182GO:0004017: adenylate kinase activity2.02E-02
183GO:0004849: uridine kinase activity2.02E-02
184GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.02E-02
185GO:0004124: cysteine synthase activity2.02E-02
186GO:0022891: substrate-specific transmembrane transporter activity2.15E-02
187GO:0030570: pectate lyase activity2.15E-02
188GO:0003756: protein disulfide isomerase activity2.34E-02
189GO:0008235: metalloexopeptidase activity2.40E-02
190GO:0043295: glutathione binding2.40E-02
191GO:0004812: aminoacyl-tRNA ligase activity2.54E-02
192GO:0050661: NADP binding2.71E-02
193GO:0008312: 7S RNA binding2.80E-02
194GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process2.80E-02
195GO:0004034: aldose 1-epimerase activity2.80E-02
196GO:0004564: beta-fructofuranosidase activity2.80E-02
197GO:0004364: glutathione transferase activity3.01E-02
198GO:0050662: coenzyme binding3.19E-02
199GO:0005375: copper ion transmembrane transporter activity3.23E-02
200GO:0004252: serine-type endopeptidase activity3.62E-02
201GO:0003747: translation release factor activity3.67E-02
202GO:0004575: sucrose alpha-glucosidase activity4.13E-02
203GO:0005381: iron ion transmembrane transporter activity4.13E-02
204GO:0016844: strictosidine synthase activity4.13E-02
205GO:0015112: nitrate transmembrane transporter activity4.13E-02
206GO:0000156: phosphorelay response regulator activity4.17E-02
207GO:0008047: enzyme activator activity4.62E-02
208GO:0004805: trehalose-phosphatase activity4.62E-02
209GO:0004864: protein phosphatase inhibitor activity4.62E-02
210GO:0008483: transaminase activity4.71E-02
211GO:0016722: oxidoreductase activity, oxidizing metal ions4.71E-02
212GO:0008237: metallopeptidase activity4.71E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0005835: fatty acid synthase complex0.00E+00
4GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
5GO:0009575: chromoplast stroma0.00E+00
6GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
7GO:0044391: ribosomal subunit0.00E+00
8GO:0009507: chloroplast3.88E-149
9GO:0009570: chloroplast stroma1.54E-91
10GO:0009941: chloroplast envelope3.29E-73
11GO:0009535: chloroplast thylakoid membrane4.32E-70
12GO:0009534: chloroplast thylakoid4.51E-55
13GO:0009579: thylakoid1.80E-52
14GO:0009543: chloroplast thylakoid lumen1.31E-45
15GO:0031977: thylakoid lumen5.98E-28
16GO:0005840: ribosome1.55E-15
17GO:0009654: photosystem II oxygen evolving complex4.32E-14
18GO:0030095: chloroplast photosystem II8.62E-12
19GO:0048046: apoplast3.79E-11
20GO:0031969: chloroplast membrane8.79E-11
21GO:0019898: extrinsic component of membrane1.79E-10
22GO:0009505: plant-type cell wall4.17E-09
23GO:0010319: stromule3.99E-07
24GO:0016020: membrane1.82E-06
25GO:0010007: magnesium chelatase complex2.08E-06
26GO:0009706: chloroplast inner membrane2.38E-06
27GO:0005618: cell wall4.05E-06
28GO:0000311: plastid large ribosomal subunit7.06E-06
29GO:0009533: chloroplast stromal thylakoid8.32E-06
30GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.42E-05
31GO:0042651: thylakoid membrane4.20E-05
32GO:0009295: nucleoid6.03E-05
33GO:0009536: plastid6.67E-05
34GO:0000427: plastid-encoded plastid RNA polymerase complex7.33E-05
35GO:0009508: plastid chromosome1.52E-04
36GO:0009523: photosystem II2.19E-04
37GO:0010287: plastoglobule7.18E-04
38GO:0015934: large ribosomal subunit1.08E-03
39GO:0034707: chloride channel complex1.38E-03
40GO:0009782: photosystem I antenna complex1.39E-03
41GO:0043674: columella1.39E-03
42GO:0009547: plastid ribosome1.39E-03
43GO:0000312: plastid small ribosomal subunit1.50E-03
44GO:0042807: central vacuole2.36E-03
45GO:0030529: intracellular ribonucleoprotein complex2.54E-03
46GO:0015935: small ribosomal subunit2.97E-03
47GO:0042170: plastid membrane3.09E-03
48GO:0080085: signal recognition particle, chloroplast targeting3.09E-03
49GO:0046658: anchored component of plasma membrane3.10E-03
50GO:0009528: plastid inner membrane5.16E-03
51GO:0009509: chromoplast5.16E-03
52GO:0033281: TAT protein transport complex5.16E-03
53GO:0009317: acetyl-CoA carboxylase complex5.16E-03
54GO:0031225: anchored component of membrane6.05E-03
55GO:0005960: glycine cleavage complex7.57E-03
56GO:0005775: vacuolar lumen7.57E-03
57GO:0042646: plastid nucleoid7.57E-03
58GO:0009531: secondary cell wall7.57E-03
59GO:0032040: small-subunit processome8.13E-03
60GO:0009527: plastid outer membrane1.03E-02
61GO:0030076: light-harvesting complex1.18E-02
62GO:0055035: plastid thylakoid membrane1.33E-02
63GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)1.66E-02
64GO:0009707: chloroplast outer membrane1.70E-02
65GO:0009532: plastid stroma1.79E-02
66GO:0016363: nuclear matrix2.02E-02
67GO:0005762: mitochondrial large ribosomal subunit2.02E-02
68GO:0022626: cytosolic ribosome2.12E-02
69GO:0009538: photosystem I reaction center2.80E-02
70GO:0009522: photosystem I3.19E-02
71GO:0009539: photosystem II reaction center3.23E-02
72GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.23E-02
73GO:0005811: lipid particle3.23E-02
74GO:0000326: protein storage vacuole3.23E-02
75GO:0005774: vacuolar membrane3.67E-02
76GO:0005763: mitochondrial small ribosomal subunit3.67E-02
77GO:0045298: tubulin complex3.67E-02
78GO:0009705: plant-type vacuole membrane4.95E-02
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Gene type



Gene DE type