GO Enrichment Analysis of Co-expressed Genes with
AT3G25410
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 6 | GO:0032544: plastid translation | 4.93E-08 |
| 7 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.23E-06 |
| 8 | GO:0010027: thylakoid membrane organization | 2.35E-05 |
| 9 | GO:0032543: mitochondrial translation | 5.47E-05 |
| 10 | GO:0006412: translation | 1.22E-04 |
| 11 | GO:2000021: regulation of ion homeostasis | 2.18E-04 |
| 12 | GO:1902458: positive regulation of stomatal opening | 2.18E-04 |
| 13 | GO:0034337: RNA folding | 2.18E-04 |
| 14 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.18E-04 |
| 15 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.18E-04 |
| 16 | GO:0043266: regulation of potassium ion transport | 2.18E-04 |
| 17 | GO:0000481: maturation of 5S rRNA | 2.18E-04 |
| 18 | GO:0042254: ribosome biogenesis | 2.65E-04 |
| 19 | GO:0010206: photosystem II repair | 2.82E-04 |
| 20 | GO:0006415: translational termination | 4.56E-04 |
| 21 | GO:0019684: photosynthesis, light reaction | 4.56E-04 |
| 22 | GO:0009073: aromatic amino acid family biosynthetic process | 4.56E-04 |
| 23 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 4.86E-04 |
| 24 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.86E-04 |
| 25 | GO:0045717: negative regulation of fatty acid biosynthetic process | 4.86E-04 |
| 26 | GO:0015979: photosynthesis | 4.88E-04 |
| 27 | GO:0009767: photosynthetic electron transport chain | 5.92E-04 |
| 28 | GO:0006954: inflammatory response | 7.90E-04 |
| 29 | GO:0006518: peptide metabolic process | 7.90E-04 |
| 30 | GO:0016556: mRNA modification | 1.13E-03 |
| 31 | GO:0009226: nucleotide-sugar biosynthetic process | 1.13E-03 |
| 32 | GO:0006424: glutamyl-tRNA aminoacylation | 1.13E-03 |
| 33 | GO:0009306: protein secretion | 1.42E-03 |
| 34 | GO:0006808: regulation of nitrogen utilization | 1.50E-03 |
| 35 | GO:1902183: regulation of shoot apical meristem development | 1.91E-03 |
| 36 | GO:0010158: abaxial cell fate specification | 1.91E-03 |
| 37 | GO:0009247: glycolipid biosynthetic process | 1.91E-03 |
| 38 | GO:0006564: L-serine biosynthetic process | 1.91E-03 |
| 39 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.91E-03 |
| 40 | GO:0006508: proteolysis | 2.29E-03 |
| 41 | GO:0016554: cytidine to uridine editing | 2.35E-03 |
| 42 | GO:0006828: manganese ion transport | 2.35E-03 |
| 43 | GO:0032973: amino acid export | 2.35E-03 |
| 44 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.35E-03 |
| 45 | GO:0010190: cytochrome b6f complex assembly | 2.35E-03 |
| 46 | GO:0042026: protein refolding | 2.83E-03 |
| 47 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.83E-03 |
| 48 | GO:0006458: 'de novo' protein folding | 2.83E-03 |
| 49 | GO:0009395: phospholipid catabolic process | 3.33E-03 |
| 50 | GO:0043090: amino acid import | 3.33E-03 |
| 51 | GO:0006821: chloride transport | 3.33E-03 |
| 52 | GO:0015995: chlorophyll biosynthetic process | 3.72E-03 |
| 53 | GO:0019375: galactolipid biosynthetic process | 3.86E-03 |
| 54 | GO:0032508: DNA duplex unwinding | 3.86E-03 |
| 55 | GO:2000070: regulation of response to water deprivation | 3.86E-03 |
| 56 | GO:0017004: cytochrome complex assembly | 4.42E-03 |
| 57 | GO:0009657: plastid organization | 4.42E-03 |
| 58 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.00E-03 |
| 59 | GO:0009821: alkaloid biosynthetic process | 5.00E-03 |
| 60 | GO:0080144: amino acid homeostasis | 5.00E-03 |
| 61 | GO:2000024: regulation of leaf development | 5.00E-03 |
| 62 | GO:0010205: photoinhibition | 5.62E-03 |
| 63 | GO:1900865: chloroplast RNA modification | 5.62E-03 |
| 64 | GO:0006816: calcium ion transport | 6.91E-03 |
| 65 | GO:0009773: photosynthetic electron transport in photosystem I | 6.91E-03 |
| 66 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.91E-03 |
| 67 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.91E-03 |
| 68 | GO:0009658: chloroplast organization | 7.15E-03 |
| 69 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.60E-03 |
| 70 | GO:0055114: oxidation-reduction process | 7.82E-03 |
| 71 | GO:0010628: positive regulation of gene expression | 8.30E-03 |
| 72 | GO:0006006: glucose metabolic process | 8.30E-03 |
| 73 | GO:0048768: root hair cell tip growth | 9.03E-03 |
| 74 | GO:0090351: seedling development | 9.79E-03 |
| 75 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.06E-02 |
| 76 | GO:0009793: embryo development ending in seed dormancy | 1.07E-02 |
| 77 | GO:0000027: ribosomal large subunit assembly | 1.14E-02 |
| 78 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.14E-02 |
| 79 | GO:0006418: tRNA aminoacylation for protein translation | 1.22E-02 |
| 80 | GO:0061077: chaperone-mediated protein folding | 1.30E-02 |
| 81 | GO:0006730: one-carbon metabolic process | 1.39E-02 |
| 82 | GO:0009753: response to jasmonic acid | 1.69E-02 |
| 83 | GO:0000413: protein peptidyl-prolyl isomerization | 1.75E-02 |
| 84 | GO:0042744: hydrogen peroxide catabolic process | 1.85E-02 |
| 85 | GO:0010154: fruit development | 1.85E-02 |
| 86 | GO:0009790: embryo development | 1.90E-02 |
| 87 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 2.15E-02 |
| 88 | GO:0071554: cell wall organization or biogenesis | 2.15E-02 |
| 89 | GO:0002229: defense response to oomycetes | 2.15E-02 |
| 90 | GO:0000302: response to reactive oxygen species | 2.15E-02 |
| 91 | GO:0009739: response to gibberellin | 2.51E-02 |
| 92 | GO:0009817: defense response to fungus, incompatible interaction | 3.37E-02 |
| 93 | GO:0018298: protein-chromophore linkage | 3.37E-02 |
| 94 | GO:0009853: photorespiration | 3.99E-02 |
| 95 | GO:0034599: cellular response to oxidative stress | 4.12E-02 |
| 96 | GO:0006810: transport | 4.22E-02 |
| 97 | GO:0006457: protein folding | 4.35E-02 |
| 98 | GO:0006839: mitochondrial transport | 4.38E-02 |
| 99 | GO:0030001: metal ion transport | 4.38E-02 |
| 100 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.44E-02 |
| 101 | GO:0051707: response to other organism | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 4 | GO:0019843: rRNA binding | 8.54E-09 |
| 5 | GO:0016851: magnesium chelatase activity | 1.87E-05 |
| 6 | GO:0016149: translation release factor activity, codon specific | 1.87E-05 |
| 7 | GO:0003735: structural constituent of ribosome | 5.55E-05 |
| 8 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.11E-04 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.33E-04 |
| 10 | GO:0004328: formamidase activity | 2.18E-04 |
| 11 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.18E-04 |
| 12 | GO:0045485: omega-6 fatty acid desaturase activity | 2.18E-04 |
| 13 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.18E-04 |
| 14 | GO:0003747: translation release factor activity | 2.82E-04 |
| 15 | GO:0008237: metallopeptidase activity | 2.97E-04 |
| 16 | GO:0008236: serine-type peptidase activity | 4.59E-04 |
| 17 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 4.86E-04 |
| 18 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.86E-04 |
| 19 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.86E-04 |
| 20 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 4.86E-04 |
| 21 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.86E-04 |
| 22 | GO:0004222: metalloendopeptidase activity | 5.54E-04 |
| 23 | GO:0070402: NADPH binding | 7.90E-04 |
| 24 | GO:0017150: tRNA dihydrouridine synthase activity | 7.90E-04 |
| 25 | GO:0003913: DNA photolyase activity | 7.90E-04 |
| 26 | GO:0002161: aminoacyl-tRNA editing activity | 7.90E-04 |
| 27 | GO:0030267: glyoxylate reductase (NADP) activity | 7.90E-04 |
| 28 | GO:0005528: FK506 binding | 9.15E-04 |
| 29 | GO:0004176: ATP-dependent peptidase activity | 1.10E-03 |
| 30 | GO:0043023: ribosomal large subunit binding | 1.13E-03 |
| 31 | GO:0008097: 5S rRNA binding | 1.13E-03 |
| 32 | GO:0001872: (1->3)-beta-D-glucan binding | 1.13E-03 |
| 33 | GO:0035250: UDP-galactosyltransferase activity | 1.13E-03 |
| 34 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.13E-03 |
| 35 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.50E-03 |
| 36 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.50E-03 |
| 37 | GO:0008374: O-acyltransferase activity | 1.91E-03 |
| 38 | GO:0005247: voltage-gated chloride channel activity | 2.35E-03 |
| 39 | GO:0004130: cytochrome-c peroxidase activity | 2.35E-03 |
| 40 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.35E-03 |
| 41 | GO:0042578: phosphoric ester hydrolase activity | 2.35E-03 |
| 42 | GO:0051920: peroxiredoxin activity | 2.83E-03 |
| 43 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.83E-03 |
| 44 | GO:0016597: amino acid binding | 2.99E-03 |
| 45 | GO:0009881: photoreceptor activity | 3.33E-03 |
| 46 | GO:0016209: antioxidant activity | 3.86E-03 |
| 47 | GO:0004033: aldo-keto reductase (NADP) activity | 3.86E-03 |
| 48 | GO:0016844: strictosidine synthase activity | 5.62E-03 |
| 49 | GO:0005384: manganese ion transmembrane transporter activity | 5.62E-03 |
| 50 | GO:0016887: ATPase activity | 6.81E-03 |
| 51 | GO:0044183: protein binding involved in protein folding | 6.91E-03 |
| 52 | GO:0004601: peroxidase activity | 7.15E-03 |
| 53 | GO:0015095: magnesium ion transmembrane transporter activity | 8.30E-03 |
| 54 | GO:0004022: alcohol dehydrogenase (NAD) activity | 8.30E-03 |
| 55 | GO:0008131: primary amine oxidase activity | 9.03E-03 |
| 56 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.03E-03 |
| 57 | GO:0043424: protein histidine kinase binding | 1.22E-02 |
| 58 | GO:0008324: cation transmembrane transporter activity | 1.22E-02 |
| 59 | GO:0004812: aminoacyl-tRNA ligase activity | 1.66E-02 |
| 60 | GO:0004519: endonuclease activity | 1.72E-02 |
| 61 | GO:0004252: serine-type endopeptidase activity | 1.80E-02 |
| 62 | GO:0008080: N-acetyltransferase activity | 1.85E-02 |
| 63 | GO:0016413: O-acetyltransferase activity | 2.68E-02 |
| 64 | GO:0030247: polysaccharide binding | 3.14E-02 |
| 65 | GO:0008168: methyltransferase activity | 3.34E-02 |
| 66 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.37E-02 |
| 67 | GO:0015238: drug transmembrane transporter activity | 3.49E-02 |
| 68 | GO:0016788: hydrolase activity, acting on ester bonds | 3.54E-02 |
| 69 | GO:0003993: acid phosphatase activity | 4.12E-02 |
| 70 | GO:0050661: NADP binding | 4.38E-02 |
| 71 | GO:0003723: RNA binding | 4.56E-02 |
| 72 | GO:0004185: serine-type carboxypeptidase activity | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.74E-49 |
| 3 | GO:0009570: chloroplast stroma | 1.01E-18 |
| 4 | GO:0009543: chloroplast thylakoid lumen | 1.86E-16 |
| 5 | GO:0031977: thylakoid lumen | 3.37E-12 |
| 6 | GO:0009941: chloroplast envelope | 3.49E-12 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 6.03E-12 |
| 8 | GO:0009534: chloroplast thylakoid | 1.69E-10 |
| 9 | GO:0009579: thylakoid | 2.24E-09 |
| 10 | GO:0010007: magnesium chelatase complex | 8.14E-06 |
| 11 | GO:0005840: ribosome | 2.96E-05 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.18E-04 |
| 13 | GO:0030095: chloroplast photosystem II | 6.66E-04 |
| 14 | GO:0000312: plastid small ribosomal subunit | 6.66E-04 |
| 15 | GO:0033281: TAT protein transport complex | 7.90E-04 |
| 16 | GO:0009536: plastid | 8.97E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 1.01E-03 |
| 18 | GO:0019898: extrinsic component of membrane | 2.06E-03 |
| 19 | GO:0034707: chloride channel complex | 2.35E-03 |
| 20 | GO:0009533: chloroplast stromal thylakoid | 3.33E-03 |
| 21 | GO:0015934: large ribosomal subunit | 4.76E-03 |
| 22 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.00E-03 |
| 23 | GO:0000311: plastid large ribosomal subunit | 7.60E-03 |
| 24 | GO:0032040: small-subunit processome | 7.60E-03 |
| 25 | GO:0009508: plastid chromosome | 8.30E-03 |
| 26 | GO:0031969: chloroplast membrane | 9.40E-03 |
| 27 | GO:0009706: chloroplast inner membrane | 1.30E-02 |
| 28 | GO:0009522: photosystem I | 1.95E-02 |
| 29 | GO:0016592: mediator complex | 2.25E-02 |
| 30 | GO:0009295: nucleoid | 2.57E-02 |
| 31 | GO:0046658: anchored component of plasma membrane | 2.97E-02 |
| 32 | GO:0022627: cytosolic small ribosomal subunit | 2.97E-02 |
| 33 | GO:0022625: cytosolic large ribosomal subunit | 4.52E-02 |