Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G24900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080053: response to phenylalanine0.00E+00
2GO:0080052: response to histidine0.00E+00
3GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
4GO:0043201: response to leucine0.00E+00
5GO:0042742: defense response to bacterium7.99E-08
6GO:0009751: response to salicylic acid2.69E-05
7GO:0046686: response to cadmium ion3.49E-05
8GO:0009697: salicylic acid biosynthetic process6.26E-05
9GO:0045454: cell redox homeostasis1.19E-04
10GO:0009617: response to bacterium1.93E-04
11GO:0006979: response to oxidative stress1.95E-04
12GO:0006102: isocitrate metabolic process2.12E-04
13GO:0033306: phytol metabolic process2.36E-04
14GO:0050691: regulation of defense response to virus by host2.36E-04
15GO:0051775: response to redox state2.36E-04
16GO:0042964: thioredoxin reduction2.36E-04
17GO:0046244: salicylic acid catabolic process2.36E-04
18GO:0019276: UDP-N-acetylgalactosamine metabolic process2.36E-04
19GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine2.36E-04
20GO:0034975: protein folding in endoplasmic reticulum2.36E-04
21GO:0051938: L-glutamate import2.36E-04
22GO:0006047: UDP-N-acetylglucosamine metabolic process2.36E-04
23GO:0015760: glucose-6-phosphate transport2.36E-04
24GO:1990641: response to iron ion starvation2.36E-04
25GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.36E-04
26GO:0010421: hydrogen peroxide-mediated programmed cell death2.36E-04
27GO:0000302: response to reactive oxygen species2.47E-04
28GO:0010204: defense response signaling pathway, resistance gene-independent2.63E-04
29GO:0009627: systemic acquired resistance4.65E-04
30GO:0006101: citrate metabolic process5.24E-04
31GO:0044419: interspecies interaction between organisms5.24E-04
32GO:0042939: tripeptide transport5.24E-04
33GO:0015712: hexose phosphate transport5.24E-04
34GO:0030003: cellular cation homeostasis5.24E-04
35GO:0043091: L-arginine import5.24E-04
36GO:0015802: basic amino acid transport5.24E-04
37GO:0009805: coumarin biosynthetic process5.24E-04
38GO:0009866: induced systemic resistance, ethylene mediated signaling pathway5.24E-04
39GO:0006048: UDP-N-acetylglucosamine biosynthetic process8.52E-04
40GO:0009062: fatty acid catabolic process8.52E-04
41GO:0035436: triose phosphate transmembrane transport8.52E-04
42GO:0006011: UDP-glucose metabolic process8.52E-04
43GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway8.52E-04
44GO:0015714: phosphoenolpyruvate transport8.52E-04
45GO:0034976: response to endoplasmic reticulum stress9.25E-04
46GO:0006874: cellular calcium ion homeostasis1.12E-03
47GO:0006511: ubiquitin-dependent protein catabolic process1.18E-03
48GO:0033014: tetrapyrrole biosynthetic process1.21E-03
49GO:0010116: positive regulation of abscisic acid biosynthetic process1.21E-03
50GO:0002239: response to oomycetes1.21E-03
51GO:0003333: amino acid transmembrane transport1.23E-03
52GO:0031348: negative regulation of defense response1.35E-03
53GO:0071456: cellular response to hypoxia1.35E-03
54GO:0019748: secondary metabolic process1.35E-03
55GO:0009846: pollen germination1.39E-03
56GO:0015713: phosphoglycerate transport1.62E-03
57GO:0042938: dipeptide transport1.62E-03
58GO:0080037: negative regulation of cytokinin-activated signaling pathway1.62E-03
59GO:0070534: protein K63-linked ubiquitination1.62E-03
60GO:0010109: regulation of photosynthesis1.62E-03
61GO:0046345: abscisic acid catabolic process1.62E-03
62GO:0010387: COP9 signalosome assembly1.62E-03
63GO:0045088: regulation of innate immune response1.62E-03
64GO:0006096: glycolytic process1.88E-03
65GO:0048316: seed development1.96E-03
66GO:0009626: plant-type hypersensitive response2.04E-03
67GO:0034052: positive regulation of plant-type hypersensitive response2.07E-03
68GO:2000762: regulation of phenylpropanoid metabolic process2.07E-03
69GO:0046283: anthocyanin-containing compound metabolic process2.07E-03
70GO:0006097: glyoxylate cycle2.07E-03
71GO:0018344: protein geranylgeranylation2.07E-03
72GO:0000304: response to singlet oxygen2.07E-03
73GO:0010193: response to ozone2.47E-03
74GO:0018258: protein O-linked glycosylation via hydroxyproline2.55E-03
75GO:0009643: photosynthetic acclimation2.55E-03
76GO:0006014: D-ribose metabolic process2.55E-03
77GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.55E-03
78GO:0010405: arabinogalactan protein metabolic process2.55E-03
79GO:0006301: postreplication repair2.55E-03
80GO:0010256: endomembrane system organization2.55E-03
81GO:0055114: oxidation-reduction process2.79E-03
82GO:0042372: phylloquinone biosynthetic process3.06E-03
83GO:1902074: response to salt3.61E-03
84GO:1900056: negative regulation of leaf senescence3.61E-03
85GO:0000338: protein deneddylation3.61E-03
86GO:0032259: methylation3.92E-03
87GO:0030091: protein repair4.19E-03
88GO:0030162: regulation of proteolysis4.19E-03
89GO:0006605: protein targeting4.19E-03
90GO:0009817: defense response to fungus, incompatible interaction4.64E-03
91GO:0009808: lignin metabolic process4.79E-03
92GO:0009699: phenylpropanoid biosynthetic process4.79E-03
93GO:0019430: removal of superoxide radicals4.79E-03
94GO:0009407: toxin catabolic process5.11E-03
95GO:0010043: response to zinc ion5.36E-03
96GO:0019432: triglyceride biosynthetic process5.43E-03
97GO:0006783: heme biosynthetic process5.43E-03
98GO:0010112: regulation of systemic acquired resistance5.43E-03
99GO:0046685: response to arsenic-containing substance5.43E-03
100GO:0048354: mucilage biosynthetic process involved in seed coat development6.09E-03
101GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.09E-03
102GO:0043067: regulation of programmed cell death6.09E-03
103GO:0006099: tricarboxylic acid cycle6.14E-03
104GO:0007064: mitotic sister chromatid cohesion6.78E-03
105GO:0009870: defense response signaling pathway, resistance gene-dependent6.78E-03
106GO:0009688: abscisic acid biosynthetic process6.78E-03
107GO:0042542: response to hydrogen peroxide7.27E-03
108GO:0009089: lysine biosynthetic process via diaminopimelate7.50E-03
109GO:0006415: translational termination7.50E-03
110GO:0009807: lignan biosynthetic process7.50E-03
111GO:0006816: calcium ion transport7.50E-03
112GO:0009744: response to sucrose7.57E-03
113GO:0051707: response to other organism7.57E-03
114GO:0002213: defense response to insect8.25E-03
115GO:0006790: sulfur compound metabolic process8.25E-03
116GO:0009636: response to toxic substance8.51E-03
117GO:0006626: protein targeting to mitochondrion9.02E-03
118GO:0006094: gluconeogenesis9.02E-03
119GO:0002237: response to molecule of bacterial origin9.82E-03
120GO:0006486: protein glycosylation1.02E-02
121GO:0046688: response to copper ion1.06E-02
122GO:0010039: response to iron ion1.06E-02
123GO:0070588: calcium ion transmembrane transport1.06E-02
124GO:0046854: phosphatidylinositol phosphorylation1.06E-02
125GO:0010053: root epidermal cell differentiation1.06E-02
126GO:0006468: protein phosphorylation1.10E-02
127GO:0009863: salicylic acid mediated signaling pathway1.24E-02
128GO:0009695: jasmonic acid biosynthetic process1.32E-02
129GO:0006825: copper ion transport1.32E-02
130GO:0009620: response to fungus1.33E-02
131GO:0015031: protein transport1.34E-02
132GO:0031408: oxylipin biosynthetic process1.42E-02
133GO:0016998: cell wall macromolecule catabolic process1.42E-02
134GO:0009553: embryo sac development1.42E-02
135GO:0006886: intracellular protein transport1.43E-02
136GO:0009624: response to nematode1.46E-02
137GO:0006457: protein folding1.48E-02
138GO:0016226: iron-sulfur cluster assembly1.51E-02
139GO:0030433: ubiquitin-dependent ERAD pathway1.51E-02
140GO:0010584: pollen exine formation1.70E-02
141GO:0000413: protein peptidyl-prolyl isomerization1.91E-02
142GO:0010118: stomatal movement1.91E-02
143GO:0010154: fruit development2.01E-02
144GO:0048868: pollen tube development2.01E-02
145GO:0009749: response to glucose2.23E-02
146GO:0019252: starch biosynthetic process2.23E-02
147GO:0009851: auxin biosynthetic process2.23E-02
148GO:0002229: defense response to oomycetes2.34E-02
149GO:0006635: fatty acid beta-oxidation2.34E-02
150GO:0007264: small GTPase mediated signal transduction2.45E-02
151GO:0010150: leaf senescence2.53E-02
152GO:0030163: protein catabolic process2.56E-02
153GO:0010252: auxin homeostasis2.68E-02
154GO:0006464: cellular protein modification process2.68E-02
155GO:0009567: double fertilization forming a zygote and endosperm2.68E-02
156GO:0009651: response to salt stress2.71E-02
157GO:0009737: response to abscisic acid3.22E-02
158GO:0015995: chlorophyll biosynthetic process3.41E-02
159GO:0016049: cell growth3.54E-02
160GO:0016311: dephosphorylation3.54E-02
161GO:0009416: response to light stimulus3.67E-02
162GO:0048527: lateral root development4.07E-02
163GO:0007568: aging4.07E-02
164GO:0006970: response to osmotic stress4.20E-02
165GO:0006865: amino acid transport4.20E-02
166GO:0045087: innate immune response4.34E-02
167GO:0016051: carbohydrate biosynthetic process4.34E-02
168GO:0006839: mitochondrial transport4.76E-02
169GO:0010200: response to chitin4.98E-02
RankGO TermAdjusted P value
1GO:0050220: prostaglandin-E synthase activity0.00E+00
2GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity0.00E+00
3GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
4GO:0005092: GDP-dissociation inhibitor activity0.00E+00
5GO:0004164: diphthine synthase activity0.00E+00
6GO:0004298: threonine-type endopeptidase activity2.92E-06
7GO:0003756: protein disulfide isomerase activity1.31E-04
8GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.36E-04
9GO:0004321: fatty-acyl-CoA synthase activity2.36E-04
10GO:0008909: isochorismate synthase activity2.36E-04
11GO:0004325: ferrochelatase activity2.36E-04
12GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity2.36E-04
13GO:0010285: L,L-diaminopimelate aminotransferase activity2.36E-04
14GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity2.36E-04
15GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.36E-04
16GO:0008809: carnitine racemase activity2.36E-04
17GO:0008233: peptidase activity4.61E-04
18GO:0004129: cytochrome-c oxidase activity5.11E-04
19GO:0042937: tripeptide transporter activity5.24E-04
20GO:0003994: aconitate hydratase activity5.24E-04
21GO:0015152: glucose-6-phosphate transmembrane transporter activity5.24E-04
22GO:0004970: ionotropic glutamate receptor activity8.34E-04
23GO:0005217: intracellular ligand-gated ion channel activity8.34E-04
24GO:0004148: dihydrolipoyl dehydrogenase activity8.52E-04
25GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.52E-04
26GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity8.52E-04
27GO:0071917: triose-phosphate transmembrane transporter activity8.52E-04
28GO:0005093: Rab GDP-dissociation inhibitor activity8.52E-04
29GO:0016531: copper chaperone activity8.52E-04
30GO:0009055: electron carrier activity1.07E-03
31GO:0015181: arginine transmembrane transporter activity1.21E-03
32GO:0016149: translation release factor activity, codon specific1.21E-03
33GO:0004449: isocitrate dehydrogenase (NAD+) activity1.21E-03
34GO:0004165: dodecenoyl-CoA delta-isomerase activity1.21E-03
35GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.21E-03
36GO:0015189: L-lysine transmembrane transporter activity1.21E-03
37GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.21E-03
38GO:0004031: aldehyde oxidase activity1.62E-03
39GO:0050302: indole-3-acetaldehyde oxidase activity1.62E-03
40GO:0010279: indole-3-acetic acid amido synthetase activity1.62E-03
41GO:0015120: phosphoglycerate transmembrane transporter activity1.62E-03
42GO:0042936: dipeptide transporter activity1.62E-03
43GO:0005313: L-glutamate transmembrane transporter activity1.62E-03
44GO:0017137: Rab GTPase binding2.07E-03
45GO:0004040: amidase activity2.07E-03
46GO:0005496: steroid binding2.07E-03
47GO:0015301: anion:anion antiporter activity2.07E-03
48GO:0010294: abscisic acid glucosyltransferase activity2.07E-03
49GO:0005452: inorganic anion exchanger activity2.07E-03
50GO:0050660: flavin adenine dinucleotide binding2.08E-03
51GO:0015035: protein disulfide oxidoreductase activity2.47E-03
52GO:0036402: proteasome-activating ATPase activity2.55E-03
53GO:0030976: thiamine pyrophosphate binding2.55E-03
54GO:1990714: hydroxyproline O-galactosyltransferase activity2.55E-03
55GO:0004747: ribokinase activity3.06E-03
56GO:0016758: transferase activity, transferring hexosyl groups3.06E-03
57GO:0005261: cation channel activity3.06E-03
58GO:0004144: diacylglycerol O-acyltransferase activity3.06E-03
59GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.06E-03
60GO:0051920: peroxiredoxin activity3.06E-03
61GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.06E-03
62GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.06E-03
63GO:0004674: protein serine/threonine kinase activity3.54E-03
64GO:0051213: dioxygenase activity3.56E-03
65GO:0008320: protein transmembrane transporter activity3.61E-03
66GO:0004033: aldo-keto reductase (NADP) activity4.19E-03
67GO:0008865: fructokinase activity4.19E-03
68GO:0016209: antioxidant activity4.19E-03
69GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.41E-03
70GO:0005507: copper ion binding4.80E-03
71GO:0050897: cobalt ion binding5.36E-03
72GO:0016614: oxidoreductase activity, acting on CH-OH group of donors5.36E-03
73GO:0003747: translation release factor activity5.43E-03
74GO:0016207: 4-coumarate-CoA ligase activity5.43E-03
75GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.87E-03
76GO:0030955: potassium ion binding6.09E-03
77GO:0004743: pyruvate kinase activity6.09E-03
78GO:0015174: basic amino acid transmembrane transporter activity6.09E-03
79GO:0050661: NADP binding6.69E-03
80GO:0008171: O-methyltransferase activity6.78E-03
81GO:0004364: glutathione transferase activity7.27E-03
82GO:0008559: xenobiotic-transporting ATPase activity7.50E-03
83GO:0005509: calcium ion binding7.70E-03
84GO:0008168: methyltransferase activity7.91E-03
85GO:0051537: 2 iron, 2 sulfur cluster binding8.19E-03
86GO:0008378: galactosyltransferase activity8.25E-03
87GO:0004022: alcohol dehydrogenase (NAD) activity9.02E-03
88GO:0005315: inorganic phosphate transmembrane transporter activity9.02E-03
89GO:0005262: calcium channel activity9.02E-03
90GO:0015114: phosphate ion transmembrane transporter activity9.02E-03
91GO:0005388: calcium-transporting ATPase activity9.02E-03
92GO:0051287: NAD binding9.17E-03
93GO:0017025: TBP-class protein binding1.06E-02
94GO:0004190: aspartic-type endopeptidase activity1.06E-02
95GO:0015171: amino acid transmembrane transporter activity1.13E-02
96GO:0031625: ubiquitin protein ligase binding1.13E-02
97GO:0045735: nutrient reservoir activity1.21E-02
98GO:0051536: iron-sulfur cluster binding1.24E-02
99GO:0080043: quercetin 3-O-glucosyltransferase activity1.33E-02
100GO:0080044: quercetin 7-O-glucosyltransferase activity1.33E-02
101GO:0016779: nucleotidyltransferase activity1.51E-02
102GO:0016301: kinase activity1.67E-02
103GO:0004499: N,N-dimethylaniline monooxygenase activity1.70E-02
104GO:0005524: ATP binding1.71E-02
105GO:0004791: thioredoxin-disulfide reductase activity2.12E-02
106GO:0016853: isomerase activity2.12E-02
107GO:0015297: antiporter activity2.41E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.56E-02
109GO:0008483: transaminase activity2.80E-02
110GO:0008194: UDP-glycosyltransferase activity2.83E-02
111GO:0030247: polysaccharide binding3.41E-02
112GO:0015238: drug transmembrane transporter activity3.80E-02
113GO:0005096: GTPase activator activity3.80E-02
114GO:0000287: magnesium ion binding3.83E-02
115GO:0004222: metalloendopeptidase activity3.93E-02
116GO:0030145: manganese ion binding4.07E-02
117GO:0016491: oxidoreductase activity4.28E-02
118GO:0003697: single-stranded DNA binding4.34E-02
119GO:0000987: core promoter proximal region sequence-specific DNA binding4.48E-02
120GO:0051539: 4 iron, 4 sulfur cluster binding4.76E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0005839: proteasome core complex2.92E-06
3GO:0019773: proteasome core complex, alpha-subunit complex6.34E-06
4GO:0005783: endoplasmic reticulum1.35E-05
5GO:0000502: proteasome complex1.79E-05
6GO:0005829: cytosol4.61E-05
7GO:0005759: mitochondrial matrix1.11E-04
8GO:0030134: ER to Golgi transport vesicle5.24E-04
9GO:0045254: pyruvate dehydrogenase complex5.24E-04
10GO:0005751: mitochondrial respiratory chain complex IV8.52E-04
11GO:0005782: peroxisomal matrix8.52E-04
12GO:0005758: mitochondrial intermembrane space1.02E-03
13GO:0005968: Rab-protein geranylgeranyltransferase complex1.21E-03
14GO:0030660: Golgi-associated vesicle membrane1.62E-03
15GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.62E-03
16GO:0031372: UBC13-MMS2 complex1.62E-03
17GO:0005746: mitochondrial respiratory chain2.07E-03
18GO:0031969: chloroplast membrane2.32E-03
19GO:0032588: trans-Golgi network membrane2.55E-03
20GO:0005801: cis-Golgi network3.06E-03
21GO:0031597: cytosolic proteasome complex3.06E-03
22GO:0031595: nuclear proteasome complex3.61E-03
23GO:0005788: endoplasmic reticulum lumen3.76E-03
24GO:0005886: plasma membrane4.15E-03
25GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.19E-03
26GO:0000326: protein storage vacuole4.79E-03
27GO:0000325: plant-type vacuole5.36E-03
28GO:0008180: COP9 signalosome5.43E-03
29GO:0031901: early endosome membrane5.43E-03
30GO:0008540: proteasome regulatory particle, base subcomplex6.09E-03
31GO:0005740: mitochondrial envelope6.78E-03
32GO:0005765: lysosomal membrane7.50E-03
33GO:0016021: integral component of membrane8.72E-03
34GO:0009507: chloroplast1.23E-02
35GO:0009536: plastid1.26E-02
36GO:0005623: cell1.88E-02
37GO:0005774: vacuolar membrane2.88E-02
38GO:0022626: cytosolic ribosome3.47E-02
39GO:0016020: membrane3.58E-02
40GO:0019005: SCF ubiquitin ligase complex3.67E-02
41GO:0005777: peroxisome4.34E-02
42GO:0005819: spindle4.62E-02
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Gene type



Gene DE type