GO Enrichment Analysis of Co-expressed Genes with
AT3G23990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 2 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 3 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 4 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 5 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 6 | GO:0031564: transcription antitermination | 0.00E+00 |
| 7 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 8 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 9 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 10 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 11 | GO:0042254: ribosome biogenesis | 1.04E-11 |
| 12 | GO:0006412: translation | 3.59E-11 |
| 13 | GO:0006364: rRNA processing | 2.64E-07 |
| 14 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.93E-07 |
| 15 | GO:0006626: protein targeting to mitochondrion | 2.04E-06 |
| 16 | GO:0031167: rRNA methylation | 8.65E-06 |
| 17 | GO:0001510: RNA methylation | 4.37E-05 |
| 18 | GO:0045901: positive regulation of translational elongation | 1.74E-04 |
| 19 | GO:0045041: protein import into mitochondrial intermembrane space | 1.74E-04 |
| 20 | GO:0006452: translational frameshifting | 1.74E-04 |
| 21 | GO:0015865: purine nucleotide transport | 1.74E-04 |
| 22 | GO:0045905: positive regulation of translational termination | 1.74E-04 |
| 23 | GO:0046686: response to cadmium ion | 2.25E-04 |
| 24 | GO:0007005: mitochondrion organization | 2.78E-04 |
| 25 | GO:0045039: protein import into mitochondrial inner membrane | 2.93E-04 |
| 26 | GO:0006954: inflammatory response | 2.93E-04 |
| 27 | GO:1902626: assembly of large subunit precursor of preribosome | 2.93E-04 |
| 28 | GO:0008033: tRNA processing | 3.89E-04 |
| 29 | GO:0006986: response to unfolded protein | 4.23E-04 |
| 30 | GO:0070301: cellular response to hydrogen peroxide | 4.23E-04 |
| 31 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.23E-04 |
| 32 | GO:0006241: CTP biosynthetic process | 4.23E-04 |
| 33 | GO:0046902: regulation of mitochondrial membrane permeability | 4.23E-04 |
| 34 | GO:0007276: gamete generation | 4.23E-04 |
| 35 | GO:0006165: nucleoside diphosphate phosphorylation | 4.23E-04 |
| 36 | GO:0006228: UTP biosynthetic process | 4.23E-04 |
| 37 | GO:0009793: embryo development ending in seed dormancy | 5.17E-04 |
| 38 | GO:0006413: translational initiation | 5.64E-04 |
| 39 | GO:0006183: GTP biosynthetic process | 5.65E-04 |
| 40 | GO:0000460: maturation of 5.8S rRNA | 5.65E-04 |
| 41 | GO:0006564: L-serine biosynthetic process | 7.14E-04 |
| 42 | GO:0009735: response to cytokinin | 7.30E-04 |
| 43 | GO:0000470: maturation of LSU-rRNA | 8.73E-04 |
| 44 | GO:0000741: karyogamy | 8.73E-04 |
| 45 | GO:0042026: protein refolding | 1.04E-03 |
| 46 | GO:0009423: chorismate biosynthetic process | 1.04E-03 |
| 47 | GO:0006458: 'de novo' protein folding | 1.04E-03 |
| 48 | GO:0009651: response to salt stress | 1.08E-03 |
| 49 | GO:0006457: protein folding | 1.22E-03 |
| 50 | GO:0042255: ribosome assembly | 1.40E-03 |
| 51 | GO:0006189: 'de novo' IMP biosynthetic process | 1.80E-03 |
| 52 | GO:0098656: anion transmembrane transport | 1.80E-03 |
| 53 | GO:0007338: single fertilization | 1.80E-03 |
| 54 | GO:0010162: seed dormancy process | 2.23E-03 |
| 55 | GO:0006913: nucleocytoplasmic transport | 2.46E-03 |
| 56 | GO:0009073: aromatic amino acid family biosynthetic process | 2.46E-03 |
| 57 | GO:0012501: programmed cell death | 2.70E-03 |
| 58 | GO:0006820: anion transport | 2.70E-03 |
| 59 | GO:0010588: cotyledon vascular tissue pattern formation | 2.94E-03 |
| 60 | GO:0048467: gynoecium development | 3.19E-03 |
| 61 | GO:0006541: glutamine metabolic process | 3.19E-03 |
| 62 | GO:0000027: ribosomal large subunit assembly | 3.98E-03 |
| 63 | GO:0030150: protein import into mitochondrial matrix | 3.98E-03 |
| 64 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.98E-03 |
| 65 | GO:0051302: regulation of cell division | 4.26E-03 |
| 66 | GO:0006334: nucleosome assembly | 4.54E-03 |
| 67 | GO:0061077: chaperone-mediated protein folding | 4.54E-03 |
| 68 | GO:0009555: pollen development | 4.63E-03 |
| 69 | GO:0009294: DNA mediated transformation | 5.13E-03 |
| 70 | GO:0009561: megagametogenesis | 5.43E-03 |
| 71 | GO:0009617: response to bacterium | 5.86E-03 |
| 72 | GO:0000413: protein peptidyl-prolyl isomerization | 6.05E-03 |
| 73 | GO:0010501: RNA secondary structure unwinding | 6.05E-03 |
| 74 | GO:0010197: polar nucleus fusion | 6.38E-03 |
| 75 | GO:0010305: leaf vascular tissue pattern formation | 6.38E-03 |
| 76 | GO:0015986: ATP synthesis coupled proton transport | 6.70E-03 |
| 77 | GO:0006635: fatty acid beta-oxidation | 7.38E-03 |
| 78 | GO:0009567: double fertilization forming a zygote and endosperm | 8.43E-03 |
| 79 | GO:0010286: heat acclimation | 8.79E-03 |
| 80 | GO:0016049: cell growth | 1.11E-02 |
| 81 | GO:0010043: response to zinc ion | 1.27E-02 |
| 82 | GO:0009631: cold acclimation | 1.27E-02 |
| 83 | GO:0048527: lateral root development | 1.27E-02 |
| 84 | GO:0009408: response to heat | 1.39E-02 |
| 85 | GO:0006099: tricarboxylic acid cycle | 1.40E-02 |
| 86 | GO:0006839: mitochondrial transport | 1.49E-02 |
| 87 | GO:0009744: response to sucrose | 1.63E-02 |
| 88 | GO:0000154: rRNA modification | 1.77E-02 |
| 89 | GO:0006810: transport | 1.85E-02 |
| 90 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 1.86E-02 |
| 91 | GO:0009846: pollen germination | 1.91E-02 |
| 92 | GO:0048367: shoot system development | 2.31E-02 |
| 93 | GO:0009553: embryo sac development | 2.53E-02 |
| 94 | GO:0009845: seed germination | 3.20E-02 |
| 95 | GO:0009790: embryo development | 3.38E-02 |
| 96 | GO:0006414: translational elongation | 3.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003922: GMP synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 2 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 3 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 4 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 5 | GO:0001072: transcription antitermination factor activity, RNA binding | 0.00E+00 |
| 6 | GO:0003735: structural constituent of ribosome | 1.87E-15 |
| 7 | GO:0030515: snoRNA binding | 4.91E-10 |
| 8 | GO:0005507: copper ion binding | 9.66E-09 |
| 9 | GO:0043021: ribonucleoprotein complex binding | 2.93E-07 |
| 10 | GO:0003723: RNA binding | 5.23E-07 |
| 11 | GO:0008649: rRNA methyltransferase activity | 1.12E-06 |
| 12 | GO:0003729: mRNA binding | 3.07E-06 |
| 13 | GO:0051082: unfolded protein binding | 1.96E-05 |
| 14 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.97E-05 |
| 15 | GO:0042134: rRNA primary transcript binding | 7.23E-05 |
| 16 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 7.23E-05 |
| 17 | GO:0048037: cofactor binding | 7.23E-05 |
| 18 | GO:0003746: translation elongation factor activity | 8.55E-05 |
| 19 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.74E-04 |
| 20 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.74E-04 |
| 21 | GO:0000774: adenyl-nucleotide exchange factor activity | 1.74E-04 |
| 22 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.74E-04 |
| 23 | GO:0051087: chaperone binding | 2.30E-04 |
| 24 | GO:0070180: large ribosomal subunit rRNA binding | 2.93E-04 |
| 25 | GO:0004550: nucleoside diphosphate kinase activity | 4.23E-04 |
| 26 | GO:0005471: ATP:ADP antiporter activity | 7.14E-04 |
| 27 | GO:0003743: translation initiation factor activity | 7.46E-04 |
| 28 | GO:0031369: translation initiation factor binding | 8.73E-04 |
| 29 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 8.73E-04 |
| 30 | GO:0016462: pyrophosphatase activity | 8.73E-04 |
| 31 | GO:0008143: poly(A) binding | 1.21E-03 |
| 32 | GO:0015288: porin activity | 1.40E-03 |
| 33 | GO:0043022: ribosome binding | 1.40E-03 |
| 34 | GO:0008308: voltage-gated anion channel activity | 1.59E-03 |
| 35 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.76E-03 |
| 36 | GO:0044183: protein binding involved in protein folding | 2.46E-03 |
| 37 | GO:0015114: phosphate ion transmembrane transporter activity | 2.94E-03 |
| 38 | GO:0008026: ATP-dependent helicase activity | 3.03E-03 |
| 39 | GO:0008266: poly(U) RNA binding | 3.19E-03 |
| 40 | GO:0004407: histone deacetylase activity | 3.98E-03 |
| 41 | GO:0005528: FK506 binding | 3.98E-03 |
| 42 | GO:0000166: nucleotide binding | 4.63E-03 |
| 43 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 6.38E-03 |
| 44 | GO:0010181: FMN binding | 6.70E-03 |
| 45 | GO:0016597: amino acid binding | 9.16E-03 |
| 46 | GO:0004004: ATP-dependent RNA helicase activity | 1.07E-02 |
| 47 | GO:0050897: cobalt ion binding | 1.27E-02 |
| 48 | GO:0005524: ATP binding | 1.29E-02 |
| 49 | GO:0003697: single-stranded DNA binding | 1.36E-02 |
| 50 | GO:0003924: GTPase activity | 1.39E-02 |
| 51 | GO:0042393: histone binding | 1.49E-02 |
| 52 | GO:0051287: NAD binding | 1.86E-02 |
| 53 | GO:0003690: double-stranded DNA binding | 2.06E-02 |
| 54 | GO:0019843: rRNA binding | 3.03E-02 |
| 55 | GO:0008565: protein transporter activity | 3.44E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 6.14E-30 |
| 4 | GO:0005840: ribosome | 7.55E-12 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 1.13E-09 |
| 6 | GO:0005739: mitochondrion | 3.45E-09 |
| 7 | GO:0032040: small-subunit processome | 1.15E-08 |
| 8 | GO:0031428: box C/D snoRNP complex | 5.26E-08 |
| 9 | GO:0005774: vacuolar membrane | 7.98E-08 |
| 10 | GO:0070545: PeBoW complex | 2.93E-07 |
| 11 | GO:0015030: Cajal body | 7.00E-07 |
| 12 | GO:0005758: mitochondrial intermembrane space | 4.61E-06 |
| 13 | GO:0022626: cytosolic ribosome | 1.12E-05 |
| 14 | GO:0005747: mitochondrial respiratory chain complex I | 1.44E-05 |
| 15 | GO:0030687: preribosome, large subunit precursor | 2.60E-05 |
| 16 | GO:0005743: mitochondrial inner membrane | 3.13E-05 |
| 17 | GO:0005773: vacuole | 3.70E-05 |
| 18 | GO:0009506: plasmodesma | 3.94E-05 |
| 19 | GO:0005759: mitochondrial matrix | 4.78E-05 |
| 20 | GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m | 7.23E-05 |
| 21 | GO:0001405: presequence translocase-associated import motor | 7.23E-05 |
| 22 | GO:0015934: large ribosomal subunit | 7.44E-05 |
| 23 | GO:0005829: cytosol | 9.78E-05 |
| 24 | GO:0005618: cell wall | 3.90E-04 |
| 25 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 5.65E-04 |
| 26 | GO:0022627: cytosolic small ribosomal subunit | 8.71E-04 |
| 27 | GO:0016363: nuclear matrix | 1.04E-03 |
| 28 | GO:0005762: mitochondrial large ribosomal subunit | 1.04E-03 |
| 29 | GO:0016020: membrane | 1.44E-03 |
| 30 | GO:0046930: pore complex | 1.59E-03 |
| 31 | GO:0009507: chloroplast | 2.15E-03 |
| 32 | GO:0005740: mitochondrial envelope | 2.23E-03 |
| 33 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.46E-03 |
| 34 | GO:0019013: viral nucleocapsid | 2.94E-03 |
| 35 | GO:0009536: plastid | 3.28E-03 |
| 36 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 3.44E-03 |
| 37 | GO:0005741: mitochondrial outer membrane | 4.54E-03 |
| 38 | GO:0016592: mediator complex | 7.72E-03 |
| 39 | GO:0005737: cytoplasm | 2.03E-02 |
| 40 | GO:0005834: heterotrimeric G-protein complex | 2.37E-02 |
| 41 | GO:0009941: chloroplast envelope | 2.49E-02 |
| 42 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.75E-02 |
| 43 | GO:0005654: nucleoplasm | 2.97E-02 |
| 44 | GO:0009570: chloroplast stroma | 4.04E-02 |
| 45 | GO:0005622: intracellular | 4.38E-02 |