Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0097164: ammonium ion metabolic process0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
10GO:0032544: plastid translation3.80E-09
11GO:0006412: translation1.80E-07
12GO:0006353: DNA-templated transcription, termination2.30E-07
13GO:0042254: ribosome biogenesis5.73E-07
14GO:0010027: thylakoid membrane organization8.86E-06
15GO:0006633: fatty acid biosynthetic process9.60E-06
16GO:0009658: chloroplast organization4.87E-05
17GO:0032502: developmental process7.39E-05
18GO:0016024: CDP-diacylglycerol biosynthetic process8.73E-05
19GO:0010207: photosystem II assembly1.28E-04
20GO:0016123: xanthophyll biosynthetic process1.51E-04
21GO:0015995: chlorophyll biosynthetic process1.73E-04
22GO:0009735: response to cytokinin1.94E-04
23GO:0006655: phosphatidylglycerol biosynthetic process2.16E-04
24GO:0042372: phylloquinone biosynthetic process2.91E-04
25GO:1901259: chloroplast rRNA processing2.91E-04
26GO:0010444: guard mother cell differentiation3.76E-04
27GO:1904966: positive regulation of vitamin E biosynthetic process4.05E-04
28GO:1904964: positive regulation of phytol biosynthetic process4.05E-04
29GO:0042371: vitamin K biosynthetic process4.05E-04
30GO:0043686: co-translational protein modification4.05E-04
31GO:0006436: tryptophanyl-tRNA aminoacylation4.05E-04
32GO:0043007: maintenance of rDNA4.05E-04
33GO:0042255: ribosome assembly4.71E-04
34GO:0006783: heme biosynthetic process6.89E-04
35GO:0043039: tRNA aminoacylation8.76E-04
36GO:1902326: positive regulation of chlorophyll biosynthetic process8.76E-04
37GO:0070981: L-asparagine biosynthetic process8.76E-04
38GO:0018026: peptidyl-lysine monomethylation8.76E-04
39GO:0006529: asparagine biosynthetic process8.76E-04
40GO:0008616: queuosine biosynthetic process8.76E-04
41GO:2000123: positive regulation of stomatal complex development8.76E-04
42GO:0006782: protoporphyrinogen IX biosynthetic process9.46E-04
43GO:0018119: peptidyl-cysteine S-nitrosylation1.09E-03
44GO:0046168: glycerol-3-phosphate catabolic process1.42E-03
45GO:0051604: protein maturation1.42E-03
46GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.42E-03
47GO:0010239: chloroplast mRNA processing2.06E-03
48GO:0006241: CTP biosynthetic process2.06E-03
49GO:0006072: glycerol-3-phosphate metabolic process2.06E-03
50GO:0006424: glutamyl-tRNA aminoacylation2.06E-03
51GO:0046739: transport of virus in multicellular host2.06E-03
52GO:0006165: nucleoside diphosphate phosphorylation2.06E-03
53GO:0006228: UTP biosynthetic process2.06E-03
54GO:0006168: adenine salvage2.06E-03
55GO:0050482: arachidonic acid secretion2.06E-03
56GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.06E-03
57GO:0009413: response to flooding2.06E-03
58GO:0006166: purine ribonucleoside salvage2.06E-03
59GO:0019344: cysteine biosynthetic process2.20E-03
60GO:0006418: tRNA aminoacylation for protein translation2.43E-03
61GO:0006631: fatty acid metabolic process2.56E-03
62GO:0009765: photosynthesis, light harvesting2.76E-03
63GO:0006183: GTP biosynthetic process2.76E-03
64GO:2000038: regulation of stomatal complex development2.76E-03
65GO:0006021: inositol biosynthetic process2.76E-03
66GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.76E-03
67GO:0044206: UMP salvage2.76E-03
68GO:0009956: radial pattern formation2.76E-03
69GO:0015976: carbon utilization2.76E-03
70GO:0008643: carbohydrate transport3.14E-03
71GO:0010375: stomatal complex patterning3.54E-03
72GO:0048359: mucilage metabolic process involved in seed coat development3.54E-03
73GO:0032543: mitochondrial translation3.54E-03
74GO:0016120: carotene biosynthetic process3.54E-03
75GO:0010236: plastoquinone biosynthetic process3.54E-03
76GO:0045038: protein import into chloroplast thylakoid membrane3.54E-03
77GO:0043097: pyrimidine nucleoside salvage3.54E-03
78GO:0031365: N-terminal protein amino acid modification3.54E-03
79GO:0044209: AMP salvage3.54E-03
80GO:0006665: sphingolipid metabolic process3.54E-03
81GO:0016117: carotenoid biosynthetic process3.76E-03
82GO:0042335: cuticle development4.07E-03
83GO:0000413: protein peptidyl-prolyl isomerization4.07E-03
84GO:0042793: transcription from plastid promoter4.38E-03
85GO:0010190: cytochrome b6f complex assembly4.38E-03
86GO:0006206: pyrimidine nucleobase metabolic process4.38E-03
87GO:0009117: nucleotide metabolic process4.38E-03
88GO:0018258: protein O-linked glycosylation via hydroxyproline4.38E-03
89GO:0035435: phosphate ion transmembrane transport4.38E-03
90GO:0006014: D-ribose metabolic process4.38E-03
91GO:0046855: inositol phosphate dephosphorylation4.38E-03
92GO:0010405: arabinogalactan protein metabolic process4.38E-03
93GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.38E-03
94GO:0009955: adaxial/abaxial pattern specification5.27E-03
95GO:0048280: vesicle fusion with Golgi apparatus5.27E-03
96GO:0009554: megasporogenesis5.27E-03
97GO:0010019: chloroplast-nucleus signaling pathway5.27E-03
98GO:0010555: response to mannitol5.27E-03
99GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.27E-03
100GO:0009772: photosynthetic electron transport in photosystem II6.23E-03
101GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.23E-03
102GO:0006400: tRNA modification6.23E-03
103GO:0009395: phospholipid catabolic process6.23E-03
104GO:0007267: cell-cell signaling6.98E-03
105GO:0009642: response to light intensity7.25E-03
106GO:0009690: cytokinin metabolic process7.25E-03
107GO:0006605: protein targeting7.25E-03
108GO:0006875: cellular metal ion homeostasis7.25E-03
109GO:0006644: phospholipid metabolic process7.25E-03
110GO:0010497: plasmodesmata-mediated intercellular transport8.32E-03
111GO:0017004: cytochrome complex assembly8.32E-03
112GO:0009932: cell tip growth8.32E-03
113GO:0009627: systemic acquired resistance8.77E-03
114GO:0010411: xyloglucan metabolic process9.25E-03
115GO:0006754: ATP biosynthetic process9.45E-03
116GO:0015780: nucleotide-sugar transport9.45E-03
117GO:0015979: photosynthesis9.50E-03
118GO:0016311: dephosphorylation9.75E-03
119GO:0045454: cell redox homeostasis1.02E-02
120GO:0009817: defense response to fungus, incompatible interaction1.03E-02
121GO:0042761: very long-chain fatty acid biosynthetic process1.06E-02
122GO:0006869: lipid transport1.17E-02
123GO:0006896: Golgi to vacuole transport1.19E-02
124GO:0006535: cysteine biosynthetic process from serine1.19E-02
125GO:0043069: negative regulation of programmed cell death1.19E-02
126GO:0045036: protein targeting to chloroplast1.19E-02
127GO:0009089: lysine biosynthetic process via diaminopimelate1.31E-02
128GO:0009073: aromatic amino acid family biosynthetic process1.31E-02
129GO:0006415: translational termination1.31E-02
130GO:0030148: sphingolipid biosynthetic process1.31E-02
131GO:0010015: root morphogenesis1.31E-02
132GO:0006790: sulfur compound metabolic process1.45E-02
133GO:0045037: protein import into chloroplast stroma1.45E-02
134GO:0050826: response to freezing1.58E-02
135GO:0010143: cutin biosynthetic process1.73E-02
136GO:0006541: glutamine metabolic process1.73E-02
137GO:0009933: meristem structural organization1.73E-02
138GO:0042546: cell wall biogenesis1.75E-02
139GO:0019853: L-ascorbic acid biosynthetic process1.87E-02
140GO:0010167: response to nitrate1.87E-02
141GO:0046854: phosphatidylinositol phosphorylation1.87E-02
142GO:0010025: wax biosynthetic process2.02E-02
143GO:0042538: hyperosmotic salinity response2.12E-02
144GO:0009116: nucleoside metabolic process2.18E-02
145GO:0000027: ribosomal large subunit assembly2.18E-02
146GO:0007017: microtubule-based process2.33E-02
147GO:0016998: cell wall macromolecule catabolic process2.50E-02
148GO:0031348: negative regulation of defense response2.66E-02
149GO:0005975: carbohydrate metabolic process2.75E-02
150GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.83E-02
151GO:0009411: response to UV2.83E-02
152GO:0010091: trichome branching3.01E-02
153GO:0042127: regulation of cell proliferation3.01E-02
154GO:0019722: calcium-mediated signaling3.01E-02
155GO:0009306: protein secretion3.01E-02
156GO:0042545: cell wall modification3.15E-02
157GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.19E-02
158GO:0042147: retrograde transport, endosome to Golgi3.19E-02
159GO:0008033: tRNA processing3.37E-02
160GO:0051726: regulation of cell cycle3.43E-02
161GO:0009742: brassinosteroid mediated signaling pathway3.43E-02
162GO:0006979: response to oxidative stress3.50E-02
163GO:0010305: leaf vascular tissue pattern formation3.55E-02
164GO:0009646: response to absence of light3.74E-02
165GO:0006623: protein targeting to vacuole3.93E-02
166GO:0019252: starch biosynthetic process3.93E-02
167GO:0008654: phospholipid biosynthetic process3.93E-02
168GO:0006891: intra-Golgi vesicle-mediated transport4.12E-02
169GO:0010583: response to cyclopentenone4.32E-02
170GO:1901657: glycosyl compound metabolic process4.52E-02
171GO:0042744: hydrogen peroxide catabolic process4.60E-02
172GO:0016042: lipid catabolic process4.65E-02
173GO:0009790: embryo development4.72E-02
174GO:0009567: double fertilization forming a zygote and endosperm4.73E-02
175GO:0016125: sterol metabolic process4.73E-02
176GO:0009828: plant-type cell wall loosening4.73E-02
RankGO TermAdjusted P value
1GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
4GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
5GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
6GO:0004496: mevalonate kinase activity0.00E+00
7GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
8GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0045435: lycopene epsilon cyclase activity0.00E+00
13GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
14GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
15GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
16GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
17GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
18GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
19GO:0005048: signal sequence binding0.00E+00
20GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
21GO:0019843: rRNA binding6.84E-14
22GO:0003735: structural constituent of ribosome2.71E-08
23GO:0051920: peroxiredoxin activity2.91E-04
24GO:0030794: (S)-coclaurine-N-methyltransferase activity4.05E-04
25GO:0004560: alpha-L-fucosidase activity4.05E-04
26GO:0080132: fatty acid alpha-hydroxylase activity4.05E-04
27GO:0047560: 3-dehydrosphinganine reductase activity4.05E-04
28GO:0004831: tyrosine-tRNA ligase activity4.05E-04
29GO:0009374: biotin binding4.05E-04
30GO:0004071: aspartate-ammonia ligase activity4.05E-04
31GO:0042586: peptide deformylase activity4.05E-04
32GO:0015088: copper uptake transmembrane transporter activity4.05E-04
33GO:0004830: tryptophan-tRNA ligase activity4.05E-04
34GO:0010347: L-galactose-1-phosphate phosphatase activity4.05E-04
35GO:0016209: antioxidant activity4.71E-04
36GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.87E-04
37GO:0052832: inositol monophosphate 3-phosphatase activity8.76E-04
38GO:0008479: queuine tRNA-ribosyltransferase activity8.76E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity8.76E-04
40GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.76E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity8.76E-04
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.76E-04
43GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity8.76E-04
44GO:0016788: hydrolase activity, acting on ester bonds1.36E-03
45GO:0005504: fatty acid binding1.42E-03
46GO:0004148: dihydrolipoyl dehydrogenase activity1.42E-03
47GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.42E-03
48GO:0070402: NADPH binding1.42E-03
49GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.06E-03
50GO:0035529: NADH pyrophosphatase activity2.06E-03
51GO:0003999: adenine phosphoribosyltransferase activity2.06E-03
52GO:0016149: translation release factor activity, codon specific2.06E-03
53GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.06E-03
54GO:0016851: magnesium chelatase activity2.06E-03
55GO:0004550: nucleoside diphosphate kinase activity2.06E-03
56GO:0043023: ribosomal large subunit binding2.06E-03
57GO:0004300: enoyl-CoA hydratase activity2.06E-03
58GO:0008097: 5S rRNA binding2.06E-03
59GO:0052689: carboxylic ester hydrolase activity2.29E-03
60GO:0045430: chalcone isomerase activity2.76E-03
61GO:0043495: protein anchor2.76E-03
62GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.76E-03
63GO:0004659: prenyltransferase activity2.76E-03
64GO:0016279: protein-lysine N-methyltransferase activity2.76E-03
65GO:0004845: uracil phosphoribosyltransferase activity2.76E-03
66GO:0003727: single-stranded RNA binding3.47E-03
67GO:0008514: organic anion transmembrane transporter activity3.47E-03
68GO:0009922: fatty acid elongase activity3.54E-03
69GO:0030414: peptidase inhibitor activity3.54E-03
70GO:0004623: phospholipase A2 activity3.54E-03
71GO:0004040: amidase activity3.54E-03
72GO:0003989: acetyl-CoA carboxylase activity3.54E-03
73GO:0004812: aminoacyl-tRNA ligase activity3.76E-03
74GO:1990714: hydroxyproline O-galactosyltransferase activity4.38E-03
75GO:0016208: AMP binding4.38E-03
76GO:0016462: pyrophosphatase activity4.38E-03
77GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.38E-03
78GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.38E-03
79GO:0004605: phosphatidate cytidylyltransferase activity4.38E-03
80GO:0080030: methyl indole-3-acetate esterase activity4.38E-03
81GO:0019901: protein kinase binding5.06E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.27E-03
83GO:0004849: uridine kinase activity5.27E-03
84GO:0004747: ribokinase activity5.27E-03
85GO:0004124: cysteine synthase activity5.27E-03
86GO:0016762: xyloglucan:xyloglucosyl transferase activity5.42E-03
87GO:0004601: peroxidase activity5.60E-03
88GO:0019899: enzyme binding6.23E-03
89GO:0043295: glutathione binding6.23E-03
90GO:0008312: 7S RNA binding7.25E-03
91GO:0008865: fructokinase activity7.25E-03
92GO:0016798: hydrolase activity, acting on glycosyl bonds9.25E-03
93GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.45E-03
94GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism9.45E-03
95GO:0003747: translation release factor activity9.45E-03
96GO:0008236: serine-type peptidase activity9.75E-03
97GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.03E-02
98GO:0005381: iron ion transmembrane transporter activity1.06E-02
99GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.13E-02
100GO:0008794: arsenate reductase (glutaredoxin) activity1.31E-02
101GO:0003993: acid phosphatase activity1.36E-02
102GO:0051539: 4 iron, 4 sulfur cluster binding1.49E-02
103GO:0015114: phosphate ion transmembrane transporter activity1.58E-02
104GO:0004089: carbonate dehydratase activity1.58E-02
105GO:0031072: heat shock protein binding1.58E-02
106GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.68E-02
107GO:0051119: sugar transmembrane transporter activity1.87E-02
108GO:0016491: oxidoreductase activity2.11E-02
109GO:0004857: enzyme inhibitor activity2.18E-02
110GO:0005528: FK506 binding2.18E-02
111GO:0008289: lipid binding2.30E-02
112GO:0008324: cation transmembrane transporter activity2.33E-02
113GO:0003690: double-stranded DNA binding2.36E-02
114GO:0045330: aspartyl esterase activity2.52E-02
115GO:0022891: substrate-specific transmembrane transporter activity2.83E-02
116GO:0004650: polygalacturonase activity2.96E-02
117GO:0030599: pectinesterase activity3.05E-02
118GO:0016746: transferase activity, transferring acyl groups3.34E-02
119GO:0008080: N-acetyltransferase activity3.55E-02
120GO:0003713: transcription coactivator activity3.55E-02
121GO:0010181: FMN binding3.74E-02
122GO:0016758: transferase activity, transferring hexosyl groups3.94E-02
123GO:0042803: protein homodimerization activity3.95E-02
124GO:0016740: transferase activity4.38E-02
125GO:0000156: phosphorelay response regulator activity4.52E-02
126GO:0016791: phosphatase activity4.73E-02
127GO:0016722: oxidoreductase activity, oxidizing metal ions4.93E-02
128GO:0005200: structural constituent of cytoskeleton4.93E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009507: chloroplast3.41E-40
4GO:0009570: chloroplast stroma4.32E-31
5GO:0009941: chloroplast envelope3.57E-25
6GO:0009579: thylakoid7.21E-17
7GO:0009535: chloroplast thylakoid membrane2.27E-11
8GO:0009543: chloroplast thylakoid lumen9.62E-10
9GO:0005840: ribosome2.20E-09
10GO:0031977: thylakoid lumen6.28E-09
11GO:0031225: anchored component of membrane1.85E-07
12GO:0046658: anchored component of plasma membrane2.70E-07
13GO:0048046: apoplast1.70E-06
14GO:0009505: plant-type cell wall2.71E-06
15GO:0005618: cell wall4.87E-05
16GO:0009536: plastid6.44E-05
17GO:0009923: fatty acid elongase complex4.05E-04
18GO:0000427: plastid-encoded plastid RNA polymerase complex8.76E-04
19GO:0080085: signal recognition particle, chloroplast targeting8.76E-04
20GO:0005576: extracellular region1.16E-03
21GO:0009534: chloroplast thylakoid1.38E-03
22GO:0009508: plastid chromosome1.41E-03
23GO:0010007: magnesium chelatase complex1.42E-03
24GO:0009509: chromoplast1.42E-03
25GO:0009317: acetyl-CoA carboxylase complex1.42E-03
26GO:0031969: chloroplast membrane1.92E-03
27GO:0009331: glycerol-3-phosphate dehydrogenase complex2.06E-03
28GO:0009654: photosystem II oxygen evolving complex2.43E-03
29GO:0042651: thylakoid membrane2.43E-03
30GO:0009526: plastid envelope2.76E-03
31GO:0031897: Tic complex2.76E-03
32GO:0055035: plastid thylakoid membrane3.54E-03
33GO:0019898: extrinsic component of membrane5.06E-03
34GO:0009533: chloroplast stromal thylakoid6.23E-03
35GO:0009295: nucleoid6.98E-03
36GO:0012507: ER to Golgi transport vesicle membrane7.25E-03
37GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.32E-03
38GO:0045298: tubulin complex9.45E-03
39GO:0005763: mitochondrial small ribosomal subunit9.45E-03
40GO:0022626: cytosolic ribosome9.64E-03
41GO:0009707: chloroplast outer membrane1.03E-02
42GO:0015934: large ribosomal subunit1.19E-02
43GO:0000311: plastid large ribosomal subunit1.45E-02
44GO:0031012: extracellular matrix1.58E-02
45GO:0015935: small ribosomal subunit2.50E-02
46GO:0031410: cytoplasmic vesicle2.66E-02
47GO:0022625: cytosolic large ribosomal subunit3.18E-02
48GO:0009706: chloroplast inner membrane3.24E-02
49GO:0009504: cell plate3.93E-02
50GO:0009523: photosystem II3.93E-02
51GO:0005778: peroxisomal membrane4.93E-02
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Gene type



Gene DE type