Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044843: cell cycle G1/S phase transition0.00E+00
2GO:0009967: positive regulation of signal transduction0.00E+00
3GO:0006412: translation8.57E-142
4GO:0042254: ribosome biogenesis3.73E-59
5GO:0000027: ribosomal large subunit assembly3.55E-15
6GO:0071215: cellular response to abscisic acid stimulus5.23E-05
7GO:0009955: adaxial/abaxial pattern specification6.99E-05
8GO:0000028: ribosomal small subunit assembly1.20E-04
9GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.62E-04
10GO:0006407: rRNA export from nucleus1.62E-04
11GO:0030490: maturation of SSU-rRNA1.62E-04
12GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.62E-04
13GO:0009735: response to cytokinin1.71E-04
14GO:0048569: post-embryonic animal organ development3.69E-04
15GO:1902626: assembly of large subunit precursor of preribosome6.04E-04
16GO:0002181: cytoplasmic translation6.04E-04
17GO:0010476: gibberellin mediated signaling pathway6.04E-04
18GO:0042256: mature ribosome assembly6.04E-04
19GO:0009965: leaf morphogenesis6.27E-04
20GO:0006165: nucleoside diphosphate phosphorylation8.63E-04
21GO:0006228: UTP biosynthetic process8.63E-04
22GO:0070301: cellular response to hydrogen peroxide8.63E-04
23GO:0006241: CTP biosynthetic process8.63E-04
24GO:0044205: 'de novo' UMP biosynthetic process1.14E-03
25GO:0042274: ribosomal small subunit biogenesis1.14E-03
26GO:0006183: GTP biosynthetic process1.14E-03
27GO:0009793: embryo development ending in seed dormancy1.42E-03
28GO:0071493: cellular response to UV-B1.45E-03
29GO:0009409: response to cold1.63E-03
30GO:0009845: seed germination1.78E-03
31GO:0000470: maturation of LSU-rRNA1.78E-03
32GO:0006414: translational elongation2.03E-03
33GO:0000911: cytokinesis by cell plate formation2.14E-03
34GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process2.52E-03
35GO:0001558: regulation of cell growth3.33E-03
36GO:0006526: arginine biosynthetic process3.33E-03
37GO:0000387: spliceosomal snRNP assembly4.22E-03
38GO:0008283: cell proliferation4.45E-03
39GO:0009644: response to high light intensity4.81E-03
40GO:0006913: nucleocytoplasmic transport5.19E-03
41GO:0010015: root morphogenesis5.19E-03
42GO:0006364: rRNA processing5.99E-03
43GO:0010102: lateral root morphogenesis6.22E-03
44GO:0006626: protein targeting to mitochondrion6.22E-03
45GO:0010229: inflorescence development6.22E-03
46GO:0006417: regulation of translation6.63E-03
47GO:0006541: glutamine metabolic process6.76E-03
48GO:0048367: shoot system development7.31E-03
49GO:0051302: regulation of cell division9.09E-03
50GO:0007005: mitochondrion organization1.04E-02
51GO:0040007: growth1.10E-02
52GO:0009791: post-embryonic development1.52E-02
53GO:0009749: response to glucose1.52E-02
54GO:0032502: developmental process1.67E-02
55GO:0010090: trichome morphogenesis1.75E-02
56GO:0048364: root development4.36E-02
RankGO TermAdjusted P value
1GO:0005078: MAP-kinase scaffold activity0.00E+00
2GO:0003735: structural constituent of ribosome9.04E-179
3GO:0003729: mRNA binding1.56E-42
4GO:0019843: rRNA binding1.24E-12
5GO:0008097: 5S rRNA binding1.11E-05
6GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity1.62E-04
7GO:0032947: protein complex scaffold6.04E-04
8GO:0070181: small ribosomal subunit rRNA binding6.04E-04
9GO:0004550: nucleoside diphosphate kinase activity8.63E-04
10GO:0008235: metalloexopeptidase activity2.52E-03
11GO:0004871: signal transducer activity7.38E-03
12GO:0000166: nucleotide binding1.88E-02
13GO:0003723: RNA binding1.95E-02
14GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.51E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0022626: cytosolic ribosome1.82E-132
3GO:0005840: ribosome8.62E-114
4GO:0022625: cytosolic large ribosomal subunit4.16E-106
5GO:0022627: cytosolic small ribosomal subunit3.18E-65
6GO:0005737: cytoplasm6.96E-45
7GO:0005730: nucleolus1.57E-41
8GO:0005829: cytosol2.02E-38
9GO:0009506: plasmodesma3.86E-26
10GO:0015934: large ribosomal subunit2.26E-19
11GO:0005774: vacuolar membrane1.06E-18
12GO:0016020: membrane1.04E-15
13GO:0015935: small ribosomal subunit1.26E-12
14GO:0005618: cell wall1.78E-11
15GO:0005773: vacuole1.79E-10
16GO:0005886: plasma membrane2.05E-08
17GO:0009507: chloroplast4.60E-05
18GO:0005951: carbamoyl-phosphate synthase complex1.62E-04
19GO:0030686: 90S preribosome1.62E-04
20GO:0034719: SMN-Sm protein complex6.04E-04
21GO:0005682: U5 snRNP1.14E-03
22GO:0005687: U4 snRNP1.45E-03
23GO:0097526: spliceosomal tri-snRNP complex1.45E-03
24GO:0005689: U12-type spliceosomal complex2.14E-03
25GO:0005622: intracellular2.76E-03
26GO:0071004: U2-type prespliceosome2.91E-03
27GO:0005742: mitochondrial outer membrane translocase complex3.33E-03
28GO:0005685: U1 snRNP3.77E-03
29GO:0071011: precatalytic spliceosome4.22E-03
30GO:0005686: U2 snRNP4.69E-03
31GO:0071013: catalytic step 2 spliceosome5.19E-03
32GO:0019013: viral nucleocapsid6.22E-03
33GO:0005834: heterotrimeric G-protein complex7.54E-03
34GO:0005758: mitochondrial intermembrane space8.48E-03
35GO:0030529: intracellular ribonucleoprotein complex2.07E-02
36GO:0005681: spliceosomal complex4.94E-02
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Gene type



Gene DE type