GO Enrichment Analysis of Co-expressed Genes with
AT3G22310
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 3 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 4 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 5 | GO:0071433: cell wall repair | 0.00E+00 |
| 6 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 7 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.79E-07 |
| 8 | GO:0006457: protein folding | 6.90E-06 |
| 9 | GO:0006099: tricarboxylic acid cycle | 6.93E-06 |
| 10 | GO:0034976: response to endoplasmic reticulum stress | 7.15E-06 |
| 11 | GO:0006102: isocitrate metabolic process | 5.25E-05 |
| 12 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 9.50E-05 |
| 13 | GO:2000232: regulation of rRNA processing | 9.50E-05 |
| 14 | GO:0043687: post-translational protein modification | 9.50E-05 |
| 15 | GO:0019673: GDP-mannose metabolic process | 9.50E-05 |
| 16 | GO:0051775: response to redox state | 9.50E-05 |
| 17 | GO:0006390: transcription from mitochondrial promoter | 9.50E-05 |
| 18 | GO:0006177: GMP biosynthetic process | 9.50E-05 |
| 19 | GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine | 2.24E-04 |
| 20 | GO:0008535: respiratory chain complex IV assembly | 2.24E-04 |
| 21 | GO:0061077: chaperone-mediated protein folding | 3.65E-04 |
| 22 | GO:0032940: secretion by cell | 3.73E-04 |
| 23 | GO:1902626: assembly of large subunit precursor of preribosome | 3.73E-04 |
| 24 | GO:0042351: 'de novo' GDP-L-fucose biosynthetic process | 3.73E-04 |
| 25 | GO:0042780: tRNA 3'-end processing | 3.73E-04 |
| 26 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 3.73E-04 |
| 27 | GO:0042256: mature ribosome assembly | 3.73E-04 |
| 28 | GO:0045039: protein import into mitochondrial inner membrane | 3.73E-04 |
| 29 | GO:0045454: cell redox homeostasis | 4.44E-04 |
| 30 | GO:0046686: response to cadmium ion | 4.92E-04 |
| 31 | GO:0072334: UDP-galactose transmembrane transport | 5.37E-04 |
| 32 | GO:0007276: gamete generation | 5.37E-04 |
| 33 | GO:0051131: chaperone-mediated protein complex assembly | 5.37E-04 |
| 34 | GO:0009651: response to salt stress | 6.23E-04 |
| 35 | GO:0051205: protein insertion into membrane | 7.14E-04 |
| 36 | GO:0000460: maturation of 5.8S rRNA | 7.14E-04 |
| 37 | GO:0080156: mitochondrial mRNA modification | 7.29E-04 |
| 38 | GO:0006413: translational initiation | 8.86E-04 |
| 39 | GO:0018279: protein N-linked glycosylation via asparagine | 9.02E-04 |
| 40 | GO:0006564: L-serine biosynthetic process | 9.02E-04 |
| 41 | GO:0006461: protein complex assembly | 9.02E-04 |
| 42 | GO:0045116: protein neddylation | 9.02E-04 |
| 43 | GO:0047484: regulation of response to osmotic stress | 1.10E-03 |
| 44 | GO:0000470: maturation of LSU-rRNA | 1.10E-03 |
| 45 | GO:0000054: ribosomal subunit export from nucleus | 1.31E-03 |
| 46 | GO:0006458: 'de novo' protein folding | 1.31E-03 |
| 47 | GO:0042773: ATP synthesis coupled electron transport | 1.54E-03 |
| 48 | GO:0010043: response to zinc ion | 1.54E-03 |
| 49 | GO:0006875: cellular metal ion homeostasis | 1.78E-03 |
| 50 | GO:0050821: protein stabilization | 1.78E-03 |
| 51 | GO:0030968: endoplasmic reticulum unfolded protein response | 2.03E-03 |
| 52 | GO:0098656: anion transmembrane transport | 2.29E-03 |
| 53 | GO:0009086: methionine biosynthetic process | 2.56E-03 |
| 54 | GO:0010205: photoinhibition | 2.56E-03 |
| 55 | GO:0043067: regulation of programmed cell death | 2.56E-03 |
| 56 | GO:0090332: stomatal closure | 2.56E-03 |
| 57 | GO:0006364: rRNA processing | 2.89E-03 |
| 58 | GO:0006415: translational termination | 3.14E-03 |
| 59 | GO:0006820: anion transport | 3.44E-03 |
| 60 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 3.44E-03 |
| 61 | GO:0048316: seed development | 3.52E-03 |
| 62 | GO:0009408: response to heat | 3.56E-03 |
| 63 | GO:0010588: cotyledon vascular tissue pattern formation | 3.76E-03 |
| 64 | GO:0048364: root development | 3.76E-03 |
| 65 | GO:0006094: gluconeogenesis | 3.76E-03 |
| 66 | GO:0010053: root epidermal cell differentiation | 4.41E-03 |
| 67 | GO:0007010: cytoskeleton organization | 5.10E-03 |
| 68 | GO:0010187: negative regulation of seed germination | 5.10E-03 |
| 69 | GO:0006487: protein N-linked glycosylation | 5.10E-03 |
| 70 | GO:0051302: regulation of cell division | 5.46E-03 |
| 71 | GO:0007131: reciprocal meiotic recombination | 6.20E-03 |
| 72 | GO:0030433: ubiquitin-dependent ERAD pathway | 6.20E-03 |
| 73 | GO:0009735: response to cytokinin | 6.58E-03 |
| 74 | GO:0071215: cellular response to abscisic acid stimulus | 6.58E-03 |
| 75 | GO:0009306: protein secretion | 6.98E-03 |
| 76 | GO:0042147: retrograde transport, endosome to Golgi | 7.38E-03 |
| 77 | GO:0008033: tRNA processing | 7.79E-03 |
| 78 | GO:0010154: fruit development | 8.21E-03 |
| 79 | GO:0010305: leaf vascular tissue pattern formation | 8.21E-03 |
| 80 | GO:0010197: polar nucleus fusion | 8.21E-03 |
| 81 | GO:0006891: intra-Golgi vesicle-mediated transport | 9.51E-03 |
| 82 | GO:0006635: fatty acid beta-oxidation | 9.51E-03 |
| 83 | GO:0010252: auxin homeostasis | 1.09E-02 |
| 84 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.09E-02 |
| 85 | GO:0042254: ribosome biogenesis | 1.11E-02 |
| 86 | GO:0010286: heat acclimation | 1.14E-02 |
| 87 | GO:0009816: defense response to bacterium, incompatible interaction | 1.28E-02 |
| 88 | GO:0048366: leaf development | 1.29E-02 |
| 89 | GO:0048481: plant ovule development | 1.49E-02 |
| 90 | GO:0048767: root hair elongation | 1.54E-02 |
| 91 | GO:0009853: photorespiration | 1.76E-02 |
| 92 | GO:0006979: response to oxidative stress | 1.82E-02 |
| 93 | GO:0042542: response to hydrogen peroxide | 2.05E-02 |
| 94 | GO:0009744: response to sucrose | 2.10E-02 |
| 95 | GO:0042546: cell wall biogenesis | 2.16E-02 |
| 96 | GO:0009644: response to high light intensity | 2.23E-02 |
| 97 | GO:0000154: rRNA modification | 2.29E-02 |
| 98 | GO:0009965: leaf morphogenesis | 2.29E-02 |
| 99 | GO:0015031: protein transport | 2.44E-02 |
| 100 | GO:0009846: pollen germination | 2.47E-02 |
| 101 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.67E-02 |
| 102 | GO:0006417: regulation of translation | 2.80E-02 |
| 103 | GO:0006096: glycolytic process | 2.93E-02 |
| 104 | GO:0048367: shoot system development | 3.00E-02 |
| 105 | GO:0009553: embryo sac development | 3.27E-02 |
| 106 | GO:0006396: RNA processing | 3.42E-02 |
| 107 | GO:0009555: pollen development | 3.56E-02 |
| 108 | GO:0009845: seed germination | 4.15E-02 |
| 109 | GO:0009790: embryo development | 4.38E-02 |
| 110 | GO:0040008: regulation of growth | 4.77E-02 |
| 111 | GO:0006412: translation | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 2 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 3 | GO:0000166: nucleotide binding | 2.97E-06 |
| 4 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 4.33E-06 |
| 5 | GO:0004298: threonine-type endopeptidase activity | 1.20E-05 |
| 6 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 1.37E-05 |
| 7 | GO:0003756: protein disulfide isomerase activity | 1.88E-05 |
| 8 | GO:0051082: unfolded protein binding | 4.02E-05 |
| 9 | GO:0008446: GDP-mannose 4,6-dehydratase activity | 9.50E-05 |
| 10 | GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity | 9.50E-05 |
| 11 | GO:0047150: betaine-homocysteine S-methyltransferase activity | 9.50E-05 |
| 12 | GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity | 9.50E-05 |
| 13 | GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity | 9.50E-05 |
| 14 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 9.50E-05 |
| 15 | GO:0005525: GTP binding | 1.19E-04 |
| 16 | GO:0003746: translation elongation factor activity | 1.45E-04 |
| 17 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 2.24E-04 |
| 18 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 2.24E-04 |
| 19 | GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters | 2.24E-04 |
| 20 | GO:0019781: NEDD8 activating enzyme activity | 2.24E-04 |
| 21 | GO:0043021: ribonucleoprotein complex binding | 2.24E-04 |
| 22 | GO:0003938: IMP dehydrogenase activity | 2.24E-04 |
| 23 | GO:0008233: peptidase activity | 3.25E-04 |
| 24 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 3.73E-04 |
| 25 | GO:0003729: mRNA binding | 4.48E-04 |
| 26 | GO:0016149: translation release factor activity, codon specific | 5.37E-04 |
| 27 | GO:0005460: UDP-glucose transmembrane transporter activity | 5.37E-04 |
| 28 | GO:0043023: ribosomal large subunit binding | 5.37E-04 |
| 29 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 5.37E-04 |
| 30 | GO:0004576: oligosaccharyl transferase activity | 7.14E-04 |
| 31 | GO:0005459: UDP-galactose transmembrane transporter activity | 9.02E-04 |
| 32 | GO:0008641: small protein activating enzyme activity | 9.02E-04 |
| 33 | GO:0005496: steroid binding | 9.02E-04 |
| 34 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 1.10E-03 |
| 35 | GO:0003743: translation initiation factor activity | 1.17E-03 |
| 36 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.33E-03 |
| 37 | GO:0030515: snoRNA binding | 1.54E-03 |
| 38 | GO:0003697: single-stranded DNA binding | 1.68E-03 |
| 39 | GO:0043022: ribosome binding | 1.78E-03 |
| 40 | GO:0015288: porin activity | 1.78E-03 |
| 41 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.91E-03 |
| 42 | GO:0008308: voltage-gated anion channel activity | 2.03E-03 |
| 43 | GO:0008135: translation factor activity, RNA binding | 2.03E-03 |
| 44 | GO:0003747: translation release factor activity | 2.29E-03 |
| 45 | GO:0005515: protein binding | 2.33E-03 |
| 46 | GO:0005507: copper ion binding | 2.47E-03 |
| 47 | GO:0051287: NAD binding | 2.60E-03 |
| 48 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.89E-03 |
| 49 | GO:0044183: protein binding involved in protein folding | 3.14E-03 |
| 50 | GO:0003924: GTPase activity | 3.56E-03 |
| 51 | GO:0005524: ATP binding | 3.97E-03 |
| 52 | GO:0004190: aspartic-type endopeptidase activity | 4.41E-03 |
| 53 | GO:0051536: iron-sulfur cluster binding | 5.10E-03 |
| 54 | GO:0003954: NADH dehydrogenase activity | 5.10E-03 |
| 55 | GO:0003713: transcription coactivator activity | 8.21E-03 |
| 56 | GO:0010181: FMN binding | 8.63E-03 |
| 57 | GO:0008137: NADH dehydrogenase (ubiquinone) activity | 9.51E-03 |
| 58 | GO:0005200: structural constituent of cytoskeleton | 1.14E-02 |
| 59 | GO:0004004: ATP-dependent RNA helicase activity | 1.38E-02 |
| 60 | GO:0005509: calcium ion binding | 1.63E-02 |
| 61 | GO:0050897: cobalt ion binding | 1.65E-02 |
| 62 | GO:0050661: NADP binding | 1.93E-02 |
| 63 | GO:0009055: electron carrier activity | 2.15E-02 |
| 64 | GO:0043621: protein self-association | 2.23E-02 |
| 65 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.23E-02 |
| 66 | GO:0016887: ATPase activity | 3.11E-02 |
| 67 | GO:0003723: RNA binding | 3.30E-02 |
| 68 | GO:0016746: transferase activity, transferring acyl groups | 3.42E-02 |
| 69 | GO:0015035: protein disulfide oxidoreductase activity | 3.42E-02 |
| 70 | GO:0004386: helicase activity | 3.56E-02 |
| 71 | GO:0016829: lyase activity | 4.15E-02 |
| 72 | GO:0003735: structural constituent of ribosome | 4.25E-02 |
| 73 | GO:0030246: carbohydrate binding | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 2 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 3 | GO:0005739: mitochondrion | 1.10E-09 |
| 4 | GO:0005788: endoplasmic reticulum lumen | 4.47E-08 |
| 5 | GO:0005783: endoplasmic reticulum | 2.84E-07 |
| 6 | GO:0070545: PeBoW complex | 4.79E-07 |
| 7 | GO:0005829: cytosol | 4.50E-06 |
| 8 | GO:0005774: vacuolar membrane | 4.52E-06 |
| 9 | GO:0005839: proteasome core complex | 1.20E-05 |
| 10 | GO:0008250: oligosaccharyltransferase complex | 1.37E-05 |
| 11 | GO:0005730: nucleolus | 1.81E-05 |
| 12 | GO:0030687: preribosome, large subunit precursor | 4.01E-05 |
| 13 | GO:0019773: proteasome core complex, alpha-subunit complex | 6.66E-05 |
| 14 | GO:0045252: oxoglutarate dehydrogenase complex | 9.50E-05 |
| 15 | GO:0034245: mitochondrial DNA-directed RNA polymerase complex | 9.50E-05 |
| 16 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.74E-04 |
| 17 | GO:0000502: proteasome complex | 3.09E-04 |
| 18 | GO:0005773: vacuole | 5.05E-04 |
| 19 | GO:0009506: plasmodesma | 5.42E-04 |
| 20 | GO:0030660: Golgi-associated vesicle membrane | 7.14E-04 |
| 21 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 7.14E-04 |
| 22 | GO:0031428: box C/D snoRNP complex | 1.10E-03 |
| 23 | GO:0032588: trans-Golgi network membrane | 1.10E-03 |
| 24 | GO:0005762: mitochondrial large ribosomal subunit | 1.31E-03 |
| 25 | GO:0030173: integral component of Golgi membrane | 1.31E-03 |
| 26 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 1.78E-03 |
| 27 | GO:0000326: protein storage vacuole | 2.03E-03 |
| 28 | GO:0046930: pore complex | 2.03E-03 |
| 29 | GO:0031901: early endosome membrane | 2.29E-03 |
| 30 | GO:0005740: mitochondrial envelope | 2.85E-03 |
| 31 | GO:0005618: cell wall | 3.11E-03 |
| 32 | GO:0005765: lysosomal membrane | 3.14E-03 |
| 33 | GO:0005852: eukaryotic translation initiation factor 3 complex | 3.14E-03 |
| 34 | GO:0032040: small-subunit processome | 3.44E-03 |
| 35 | GO:0005834: heterotrimeric G-protein complex | 3.63E-03 |
| 36 | GO:0030176: integral component of endoplasmic reticulum membrane | 4.41E-03 |
| 37 | GO:0005886: plasma membrane | 5.14E-03 |
| 38 | GO:0045271: respiratory chain complex I | 5.46E-03 |
| 39 | GO:0005741: mitochondrial outer membrane | 5.83E-03 |
| 40 | GO:0005794: Golgi apparatus | 9.06E-03 |
| 41 | GO:0016592: mediator complex | 9.96E-03 |
| 42 | GO:0016020: membrane | 1.07E-02 |
| 43 | GO:0015934: large ribosomal subunit | 1.65E-02 |
| 44 | GO:0005819: spindle | 1.87E-02 |
| 45 | GO:0005743: mitochondrial inner membrane | 1.87E-02 |
| 46 | GO:0005856: cytoskeleton | 2.29E-02 |
| 47 | GO:0009505: plant-type cell wall | 2.40E-02 |
| 48 | GO:0031966: mitochondrial membrane | 2.47E-02 |
| 49 | GO:0005747: mitochondrial respiratory chain complex I | 3.00E-02 |
| 50 | GO:0005789: endoplasmic reticulum membrane | 3.07E-02 |
| 51 | GO:0022626: cytosolic ribosome | 3.41E-02 |
| 52 | GO:0005654: nucleoplasm | 3.85E-02 |
| 53 | GO:0009524: phragmoplast | 4.07E-02 |
| 54 | GO:0009941: chloroplast envelope | 4.25E-02 |
| 55 | GO:0005759: mitochondrial matrix | 4.61E-02 |