co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G22210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009106: lipoate metabolic process	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0042593: glucose homeostasis	0.00E+00
5	GO:0009249: protein lipoylation	0.00E+00
6	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
7	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
8	GO:0061635: regulation of protein complex stability	0.00E+00
9	GO:0006412: translation	4.01E-19
10	GO:0015979: photosynthesis	7.08E-13
11	GO:0032544: plastid translation	2.20E-12
12	GO:0042254: ribosome biogenesis	1.09E-09
13	GO:0009735: response to cytokinin	1.90E-07
14	GO:0009773: photosynthetic electron transport in photosystem I	2.13E-05
15	GO:0010027: thylakoid membrane organization	3.13E-05
16	GO:0015976: carbon utilization	4.05E-05
17	GO:0009409: response to cold	1.15E-04
18	GO:0010114: response to red light	1.31E-04
19	GO:0043489: RNA stabilization	2.41E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	2.41E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	2.41E-04
22	GO:0042371: vitamin K biosynthetic process	2.41E-04
23	GO:1902458: positive regulation of stomatal opening	2.41E-04
24	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.41E-04
25	GO:0009657: plastid organization	2.70E-04
26	GO:0009658: chloroplast organization	3.37E-04
27	GO:0006779: porphyrin-containing compound biosynthetic process	3.89E-04
28	GO:0006782: protoporphyrinogen IX biosynthetic process	4.55E-04
29	GO:0015995: chlorophyll biosynthetic process	5.17E-04
30	GO:0034755: iron ion transmembrane transport	5.34E-04
31	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.34E-04
32	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.34E-04
33	GO:0009725: response to hormone	6.81E-04
34	GO:0015714: phosphoenolpyruvate transport	8.68E-04
35	GO:0006518: peptide metabolic process	8.68E-04
36	GO:0005977: glycogen metabolic process	8.68E-04
37	GO:0006011: UDP-glucose metabolic process	8.68E-04
38	GO:0006636: unsaturated fatty acid biosynthetic process	9.50E-04
39	GO:0009800: cinnamic acid biosynthetic process	1.24E-03
40	GO:0006165: nucleoside diphosphate phosphorylation	1.24E-03
41	GO:0006228: UTP biosynthetic process	1.24E-03
42	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.24E-03
43	GO:2001141: regulation of RNA biosynthetic process	1.24E-03
44	GO:1902476: chloride transmembrane transport	1.24E-03
45	GO:0051513: regulation of monopolar cell growth	1.24E-03
46	GO:0006241: CTP biosynthetic process	1.24E-03
47	GO:0080170: hydrogen peroxide transmembrane transport	1.24E-03
48	GO:0009306: protein secretion	1.63E-03
49	GO:2000122: negative regulation of stomatal complex development	1.65E-03
50	GO:0030104: water homeostasis	1.65E-03
51	GO:0015713: phosphoglycerate transport	1.65E-03
52	GO:0010037: response to carbon dioxide	1.65E-03
53	GO:0006183: GTP biosynthetic process	1.65E-03
54	GO:0032543: mitochondrial translation	2.11E-03
55	GO:0045038: protein import into chloroplast thylakoid membrane	2.11E-03
56	GO:0009107: lipoate biosynthetic process	2.11E-03
57	GO:0009247: glycolipid biosynthetic process	2.11E-03
58	GO:0034052: positive regulation of plant-type hypersensitive response	2.11E-03
59	GO:0006559: L-phenylalanine catabolic process	2.60E-03
60	GO:0032973: amino acid export	2.60E-03
61	GO:0010942: positive regulation of cell death	2.60E-03
62	GO:0042549: photosystem II stabilization	2.60E-03
63	GO:1901259: chloroplast rRNA processing	3.12E-03
64	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.12E-03
65	GO:0009854: oxidative photosynthetic carbon pathway	3.12E-03
66	GO:0009955: adaxial/abaxial pattern specification	3.12E-03
67	GO:0006821: chloride transport	3.68E-03
68	GO:0050829: defense response to Gram-negative bacterium	3.68E-03
69	GO:0009610: response to symbiotic fungus	3.68E-03
70	GO:0009772: photosynthetic electron transport in photosystem II	3.68E-03
71	GO:0043090: amino acid import	3.68E-03
72	GO:0009790: embryo development	3.99E-03
73	GO:0042255: ribosome assembly	4.27E-03
74	GO:0043068: positive regulation of programmed cell death	4.27E-03
75	GO:0006605: protein targeting	4.27E-03
76	GO:0019375: galactolipid biosynthetic process	4.27E-03
77	GO:2000070: regulation of response to water deprivation	4.27E-03
78	GO:0009231: riboflavin biosynthetic process	4.27E-03
79	GO:0052543: callose deposition in cell wall	4.27E-03
80	GO:0018298: protein-chromophore linkage	4.77E-03
81	GO:0009699: phenylpropanoid biosynthetic process	4.89E-03
82	GO:0071482: cellular response to light stimulus	4.89E-03
83	GO:0009793: embryo development ending in seed dormancy	4.93E-03
84	GO:0010119: regulation of stomatal movement	5.51E-03
85	GO:0009821: alkaloid biosynthetic process	5.54E-03
86	GO:0080144: amino acid homeostasis	5.54E-03
87	GO:0006783: heme biosynthetic process	5.54E-03
88	GO:0009051: pentose-phosphate shunt, oxidative branch	5.54E-03
89	GO:0009245: lipid A biosynthetic process	5.54E-03
90	GO:0009637: response to blue light	6.04E-03
91	GO:0010205: photoinhibition	6.21E-03
92	GO:0009299: mRNA transcription	6.92E-03
93	GO:0006949: syncytium formation	6.92E-03
94	GO:0019684: photosynthesis, light reaction	7.65E-03
95	GO:0009089: lysine biosynthetic process via diaminopimelate	7.65E-03
96	GO:0043085: positive regulation of catalytic activity	7.65E-03
97	GO:0006879: cellular iron ion homeostasis	7.65E-03
98	GO:0006352: DNA-templated transcription, initiation	7.65E-03
99	GO:0009750: response to fructose	7.65E-03
100	GO:0009698: phenylpropanoid metabolic process	7.65E-03
101	GO:0009744: response to sucrose	7.79E-03
102	GO:0015706: nitrate transport	8.41E-03
103	GO:0045037: protein import into chloroplast stroma	8.41E-03
104	GO:0009691: cytokinin biosynthetic process	9.20E-03
105	GO:0010628: positive regulation of gene expression	9.20E-03
106	GO:0006006: glucose metabolic process	9.20E-03
107	GO:0042742: defense response to bacterium	9.32E-03
108	GO:0010207: photosystem II assembly	1.00E-02
109	GO:0009416: response to light stimulus	1.05E-02
110	GO:0010030: positive regulation of seed germination	1.09E-02
111	GO:0010167: response to nitrate	1.09E-02
112	GO:0019762: glucosinolate catabolic process	1.17E-02
113	GO:0045333: cellular respiration	1.26E-02
114	GO:0000027: ribosomal large subunit assembly	1.26E-02
115	GO:0009768: photosynthesis, light harvesting in photosystem I	1.35E-02
116	GO:0009740: gibberellic acid mediated signaling pathway	1.41E-02
117	GO:0045454: cell redox homeostasis	1.42E-02
118	GO:0031408: oxylipin biosynthetic process	1.45E-02
119	GO:0019915: lipid storage	1.45E-02
120	GO:0061077: chaperone-mediated protein folding	1.45E-02
121	GO:0042545: cell wall modification	1.46E-02
122	GO:0009814: defense response, incompatible interaction	1.54E-02
123	GO:0035428: hexose transmembrane transport	1.54E-02
124	GO:0006730: one-carbon metabolic process	1.54E-02
125	GO:0019748: secondary metabolic process	1.54E-02
126	GO:0006396: RNA processing	1.55E-02
127	GO:0009411: response to UV	1.64E-02
128	GO:0006284: base-excision repair	1.74E-02
129	GO:0009561: megagametogenesis	1.74E-02
130	GO:0042335: cuticle development	1.95E-02
131	GO:0008033: tRNA processing	1.95E-02
132	GO:0034220: ion transmembrane transport	1.95E-02
133	GO:0000413: protein peptidyl-prolyl isomerization	1.95E-02
134	GO:0010087: phloem or xylem histogenesis	1.95E-02
135	GO:0006662: glycerol ether metabolic process	2.05E-02
136	GO:0046323: glucose import	2.05E-02
137	GO:0009741: response to brassinosteroid	2.05E-02
138	GO:0015986: ATP synthesis coupled proton transport	2.16E-02
139	GO:0009749: response to glucose	2.27E-02
140	GO:0006633: fatty acid biosynthetic process	2.37E-02
141	GO:0040008: regulation of growth	2.48E-02
142	GO:0032502: developmental process	2.50E-02
143	GO:0045490: pectin catabolic process	2.60E-02
144	GO:0009828: plant-type cell wall loosening	2.73E-02
145	GO:0009739: response to gibberellin	2.91E-02
146	GO:0009627: systemic acquired resistance	3.35E-02
147	GO:0010411: xyloglucan metabolic process	3.48E-02
148	GO:0009733: response to auxin	3.55E-02
149	GO:0009826: unidimensional cell growth	3.87E-02
150	GO:0009611: response to wounding	3.90E-02
151	GO:0010218: response to far red light	4.01E-02
152	GO:0009631: cold acclimation	4.15E-02
153	GO:0045087: innate immune response	4.43E-02
154	GO:0009853: photorespiration	4.43E-02
155	GO:0034599: cellular response to oxidative stress	4.57E-02
156	GO:0030001: metal ion transport	4.86E-02
157	GO:0006839: mitochondrial transport	4.86E-02
158	GO:0080167: response to karrikin	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0008887: glycerate kinase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
6	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
7	GO:0019843: rRNA binding	2.22E-26
8	GO:0003735: structural constituent of ribosome	2.24E-23
9	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.70E-06
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.72E-04
11	GO:0004655: porphobilinogen synthase activity	2.41E-04
12	GO:0009671: nitrate:proton symporter activity	2.41E-04
13	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.41E-04
14	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.41E-04
15	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.70E-04
16	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.34E-04
17	GO:0017118: lipoyltransferase activity	5.34E-04
18	GO:0042389: omega-3 fatty acid desaturase activity	5.34E-04
19	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.34E-04
20	GO:0043425: bHLH transcription factor binding	5.34E-04
21	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.34E-04
22	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.34E-04
23	GO:0016415: octanoyltransferase activity	5.34E-04
24	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.34E-04
25	GO:0004089: carbonate dehydratase activity	6.81E-04
26	GO:0008266: poly(U) RNA binding	7.67E-04
27	GO:0003935: GTP cyclohydrolase II activity	8.68E-04
28	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	8.68E-04
29	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	8.68E-04
30	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	8.68E-04
31	GO:0045548: phenylalanine ammonia-lyase activity	8.68E-04
32	GO:0005528: FK506 binding	1.05E-03
33	GO:0051537: 2 iron, 2 sulfur cluster binding	1.20E-03
34	GO:0035250: UDP-galactosyltransferase activity	1.24E-03
35	GO:0004550: nucleoside diphosphate kinase activity	1.24E-03
36	GO:0003727: single-stranded RNA binding	1.63E-03
37	GO:0043495: protein anchor	1.65E-03
38	GO:0005253: anion channel activity	1.65E-03
39	GO:0015120: phosphoglycerate transmembrane transporter activity	1.65E-03
40	GO:0001053: plastid sigma factor activity	1.65E-03
41	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.65E-03
42	GO:0016987: sigma factor activity	1.65E-03
43	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.11E-03
44	GO:0052623: ADP dimethylallyltransferase activity	2.11E-03
45	GO:0016651: oxidoreductase activity, acting on NAD(P)H	2.11E-03
46	GO:0052622: ATP dimethylallyltransferase activity	2.11E-03
47	GO:0008725: DNA-3-methyladenine glycosylase activity	2.11E-03
48	GO:0015035: protein disulfide oxidoreductase activity	2.56E-03
49	GO:0031177: phosphopantetheine binding	2.60E-03
50	GO:0009824: AMP dimethylallyltransferase activity	2.60E-03
51	GO:0005247: voltage-gated chloride channel activity	2.60E-03
52	GO:0000035: acyl binding	3.12E-03
53	GO:0019899: enzyme binding	3.68E-03
54	GO:0016168: chlorophyll binding	3.87E-03
55	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.27E-03
56	GO:0009055: electron carrier activity	4.87E-03
57	GO:0004222: metalloendopeptidase activity	5.26E-03
58	GO:0016844: strictosidine synthase activity	6.21E-03
59	GO:0015112: nitrate transmembrane transporter activity	6.21E-03
60	GO:0005381: iron ion transmembrane transporter activity	6.21E-03
61	GO:0008047: enzyme activator activity	6.92E-03
62	GO:0008794: arsenate reductase (glutaredoxin) activity	7.65E-03
63	GO:0004185: serine-type carboxypeptidase activity	7.79E-03
64	GO:0031072: heat shock protein binding	9.20E-03
65	GO:0008146: sulfotransferase activity	1.09E-02
66	GO:0051119: sugar transmembrane transporter activity	1.09E-02
67	GO:0045330: aspartyl esterase activity	1.17E-02
68	GO:0031409: pigment binding	1.17E-02
69	GO:0030599: pectinesterase activity	1.41E-02
70	GO:0022891: substrate-specific transmembrane transporter activity	1.64E-02
71	GO:0047134: protein-disulfide reductase activity	1.84E-02
72	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.05E-02
73	GO:0005355: glucose transmembrane transporter activity	2.16E-02
74	GO:0010181: FMN binding	2.16E-02
75	GO:0004791: thioredoxin-disulfide reductase activity	2.16E-02
76	GO:0015144: carbohydrate transmembrane transporter activity	2.25E-02
77	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.38E-02
78	GO:0048038: quinone binding	2.38E-02
79	GO:0015297: antiporter activity	2.48E-02
80	GO:0005351: sugar:proton symporter activity	2.54E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.62E-02
82	GO:0005509: calcium ion binding	2.66E-02
83	GO:0016597: amino acid binding	2.98E-02
84	GO:0015250: water channel activity	3.10E-02
85	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.48E-02
86	GO:0102483: scopolin beta-glucosidase activity	3.48E-02
87	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.61E-02
88	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.75E-02
89	GO:0016788: hydrolase activity, acting on ester bonds	4.09E-02
90	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.57E-02
91	GO:0003993: acid phosphatase activity	4.57E-02
92	GO:0008422: beta-glucosidase activity	4.71E-02
93	GO:0050661: NADP binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	3.20E-54
4	GO:0009941: chloroplast envelope	2.20E-39
5	GO:0009570: chloroplast stroma	2.23E-36
6	GO:0009535: chloroplast thylakoid membrane	8.30E-28
7	GO:0009579: thylakoid	1.74E-24
8	GO:0005840: ribosome	1.31E-21
9	GO:0009543: chloroplast thylakoid lumen	1.90E-14
10	GO:0031977: thylakoid lumen	2.78E-10
11	GO:0009534: chloroplast thylakoid	5.45E-09
12	GO:0000311: plastid large ribosomal subunit	5.88E-09
13	GO:0009654: photosystem II oxygen evolving complex	4.54E-08
14	GO:0019898: extrinsic component of membrane	1.27E-05
15	GO:0000312: plastid small ribosomal subunit	4.06E-05
16	GO:0015934: large ribosomal subunit	6.96E-05
17	GO:0015935: small ribosomal subunit	9.24E-05
18	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	2.41E-04
19	GO:0009547: plastid ribosome	2.41E-04
20	GO:0043674: columella	2.41E-04
21	GO:0009536: plastid	3.55E-04
22	GO:0009706: chloroplast inner membrane	3.90E-04
23	GO:0016020: membrane	4.07E-04
24	GO:0031969: chloroplast membrane	5.00E-04
25	GO:0042170: plastid membrane	5.34E-04
26	GO:0033281: TAT protein transport complex	8.68E-04
27	GO:0042646: plastid nucleoid	1.24E-03
28	GO:0009522: photosystem I	2.21E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.60E-03
30	GO:0034707: chloride channel complex	2.60E-03
31	GO:0010287: plastoglobule	3.06E-03
32	GO:0005762: mitochondrial large ribosomal subunit	3.12E-03
33	GO:0016363: nuclear matrix	3.12E-03
34	GO:0009295: nucleoid	3.26E-03
35	GO:0010319: stromule	3.26E-03
36	GO:0042807: central vacuole	3.68E-03
37	GO:0009539: photosystem II reaction center	4.89E-03
38	GO:0009705: plant-type vacuole membrane	4.94E-03
39	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.54E-03
40	GO:0005763: mitochondrial small ribosomal subunit	5.54E-03
41	GO:0022627: cytosolic small ribosomal subunit	7.06E-03
42	GO:0019013: viral nucleocapsid	9.20E-03
43	GO:0030095: chloroplast photosystem II	1.00E-02
44	GO:0030076: light-harvesting complex	1.09E-02
45	GO:0042651: thylakoid membrane	1.35E-02
46	GO:0031965: nuclear membrane	2.27E-02
47	GO:0009523: photosystem II	2.27E-02
48	GO:0071944: cell periphery	2.62E-02
49	GO:0030529: intracellular ribonucleoprotein complex	3.10E-02
50	GO:0022626: cytosolic ribosome	3.60E-02
51	GO:0005618: cell wall	3.88E-02
52	GO:0009505: plant-type cell wall	4.15E-02