Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G21550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0090627: plant epidermal cell differentiation0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
10GO:0010480: microsporocyte differentiation0.00E+00
11GO:0090042: tubulin deacetylation0.00E+00
12GO:0015979: photosynthesis1.43E-08
13GO:0009773: photosynthetic electron transport in photosystem I2.80E-08
14GO:0015995: chlorophyll biosynthetic process1.22E-05
15GO:0010206: photosystem II repair3.05E-05
16GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.29E-05
17GO:0015994: chlorophyll metabolic process9.33E-05
18GO:0006546: glycine catabolic process9.33E-05
19GO:0010027: thylakoid membrane organization1.21E-04
20GO:0045038: protein import into chloroplast thylakoid membrane1.45E-04
21GO:0042549: photosystem II stabilization2.07E-04
22GO:0009772: photosynthetic electron transport in photosystem II3.62E-04
23GO:0048437: floral organ development3.62E-04
24GO:0006810: transport3.78E-04
25GO:0071588: hydrogen peroxide mediated signaling pathway3.94E-04
26GO:0000476: maturation of 4.5S rRNA3.94E-04
27GO:0000967: rRNA 5'-end processing3.94E-04
28GO:0031338: regulation of vesicle fusion3.94E-04
29GO:0000481: maturation of 5S rRNA3.94E-04
30GO:0006824: cobalt ion transport3.94E-04
31GO:0010028: xanthophyll cycle3.94E-04
32GO:0034337: RNA folding3.94E-04
33GO:0009958: positive gravitropism4.97E-04
34GO:0032544: plastid translation5.53E-04
35GO:0009638: phototropism7.83E-04
36GO:0030388: fructose 1,6-bisphosphate metabolic process8.55E-04
37GO:0034470: ncRNA processing8.55E-04
38GO:0010541: acropetal auxin transport8.55E-04
39GO:0090342: regulation of cell aging8.55E-04
40GO:0034755: iron ion transmembrane transport8.55E-04
41GO:0001736: establishment of planar polarity8.55E-04
42GO:0016122: xanthophyll metabolic process8.55E-04
43GO:0048229: gametophyte development1.05E-03
44GO:0008152: metabolic process1.12E-03
45GO:0016024: CDP-diacylglycerol biosynthetic process1.20E-03
46GO:0006094: gluconeogenesis1.36E-03
47GO:0009767: photosynthetic electron transport chain1.36E-03
48GO:0030036: actin cytoskeleton organization1.36E-03
49GO:0010075: regulation of meristem growth1.36E-03
50GO:0006000: fructose metabolic process1.39E-03
51GO:0006518: peptide metabolic process1.39E-03
52GO:0010623: programmed cell death involved in cell development1.39E-03
53GO:0006013: mannose metabolic process1.39E-03
54GO:0010160: formation of animal organ boundary1.39E-03
55GO:0045493: xylan catabolic process1.39E-03
56GO:0090630: activation of GTPase activity1.39E-03
57GO:2001295: malonyl-CoA biosynthetic process1.39E-03
58GO:0009934: regulation of meristem structural organization1.53E-03
59GO:0010143: cutin biosynthetic process1.53E-03
60GO:0010207: photosystem II assembly1.53E-03
61GO:0010218: response to far red light1.63E-03
62GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.90E-03
63GO:0006833: water transport1.91E-03
64GO:0007231: osmosensory signaling pathway2.00E-03
65GO:0051639: actin filament network formation2.00E-03
66GO:0034059: response to anoxia2.00E-03
67GO:0080170: hydrogen peroxide transmembrane transport2.00E-03
68GO:0043481: anthocyanin accumulation in tissues in response to UV light2.00E-03
69GO:1901332: negative regulation of lateral root development2.00E-03
70GO:0051016: barbed-end actin filament capping2.00E-03
71GO:0043572: plastid fission2.00E-03
72GO:0010088: phloem development2.00E-03
73GO:0055070: copper ion homeostasis2.00E-03
74GO:0042744: hydrogen peroxide catabolic process2.01E-03
75GO:0009768: photosynthesis, light harvesting in photosystem I2.34E-03
76GO:0051764: actin crosslink formation2.69E-03
77GO:0019464: glycine decarboxylation via glycine cleavage system2.69E-03
78GO:0045727: positive regulation of translation2.69E-03
79GO:0033500: carbohydrate homeostasis2.69E-03
80GO:0051205: protein insertion into membrane2.69E-03
81GO:0010021: amylopectin biosynthetic process2.69E-03
82GO:0016120: carotene biosynthetic process3.44E-03
83GO:0035434: copper ion transmembrane transport3.44E-03
84GO:0006461: protein complex assembly3.44E-03
85GO:0048653: anther development3.91E-03
86GO:0034220: ion transmembrane transport3.91E-03
87GO:0009913: epidermal cell differentiation4.26E-03
88GO:0006655: phosphatidylglycerol biosynthetic process4.26E-03
89GO:0060918: auxin transport4.26E-03
90GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.26E-03
91GO:0006751: glutathione catabolic process4.26E-03
92GO:0010067: procambium histogenesis5.13E-03
93GO:0006694: steroid biosynthetic process5.13E-03
94GO:0009942: longitudinal axis specification5.13E-03
95GO:0010019: chloroplast-nucleus signaling pathway5.13E-03
96GO:0000302: response to reactive oxygen species5.21E-03
97GO:0016132: brassinosteroid biosynthetic process5.21E-03
98GO:0009658: chloroplast organization5.27E-03
99GO:0098869: cellular oxidant detoxification6.06E-03
100GO:0051693: actin filament capping6.06E-03
101GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.06E-03
102GO:0010196: nonphotochemical quenching6.06E-03
103GO:0009645: response to low light intensity stimulus6.06E-03
104GO:0008610: lipid biosynthetic process7.05E-03
105GO:0006605: protein targeting7.05E-03
106GO:0032508: DNA duplex unwinding7.05E-03
107GO:0045010: actin nucleation7.05E-03
108GO:0055114: oxidation-reduction process7.33E-03
109GO:0009409: response to cold7.54E-03
110GO:0006002: fructose 6-phosphate metabolic process8.09E-03
111GO:0071482: cellular response to light stimulus8.09E-03
112GO:0009657: plastid organization8.09E-03
113GO:0009808: lignin metabolic process8.09E-03
114GO:0009735: response to cytokinin8.31E-03
115GO:0042128: nitrate assimilation8.42E-03
116GO:0010411: xyloglucan metabolic process8.89E-03
117GO:0090305: nucleic acid phosphodiester bond hydrolysis9.18E-03
118GO:0006098: pentose-phosphate shunt9.18E-03
119GO:0048507: meristem development9.18E-03
120GO:0000373: Group II intron splicing9.18E-03
121GO:0000902: cell morphogenesis9.18E-03
122GO:0009817: defense response to fungus, incompatible interaction9.86E-03
123GO:0018298: protein-chromophore linkage9.86E-03
124GO:0010205: photoinhibition1.03E-02
125GO:0006779: porphyrin-containing compound biosynthetic process1.03E-02
126GO:1900865: chloroplast RNA modification1.03E-02
127GO:0010311: lateral root formation1.04E-02
128GO:0006633: fatty acid biosynthetic process1.10E-02
129GO:0006782: protoporphyrinogen IX biosynthetic process1.15E-02
130GO:0048829: root cap development1.15E-02
131GO:0009637: response to blue light1.25E-02
132GO:0006816: calcium ion transport1.28E-02
133GO:1903507: negative regulation of nucleic acid-templated transcription1.28E-02
134GO:0009807: lignan biosynthetic process1.28E-02
135GO:0048765: root hair cell differentiation1.28E-02
136GO:0034599: cellular response to oxidative stress1.31E-02
137GO:0008361: regulation of cell size1.41E-02
138GO:0006820: anion transport1.41E-02
139GO:0005983: starch catabolic process1.41E-02
140GO:0030001: metal ion transport1.43E-02
141GO:0009733: response to auxin1.44E-02
142GO:0005986: sucrose biosynthetic process1.54E-02
143GO:0010102: lateral root morphogenesis1.54E-02
144GO:0018107: peptidyl-threonine phosphorylation1.54E-02
145GO:0009718: anthocyanin-containing compound biosynthetic process1.54E-02
146GO:0010114: response to red light1.62E-02
147GO:0009926: auxin polar transport1.62E-02
148GO:0010020: chloroplast fission1.68E-02
149GO:0007015: actin filament organization1.68E-02
150GO:0010223: secondary shoot formation1.68E-02
151GO:0019253: reductive pentose-phosphate cycle1.68E-02
152GO:0010540: basipetal auxin transport1.68E-02
153GO:0005985: sucrose metabolic process1.82E-02
154GO:0010030: positive regulation of seed germination1.82E-02
155GO:0070588: calcium ion transmembrane transport1.82E-02
156GO:0007165: signal transduction1.88E-02
157GO:0006636: unsaturated fatty acid biosynthetic process1.96E-02
158GO:0051017: actin filament bundle assembly2.11E-02
159GO:0009585: red, far-red light phototransduction2.19E-02
160GO:0009734: auxin-activated signaling pathway2.21E-02
161GO:0051603: proteolysis involved in cellular protein catabolic process2.26E-02
162GO:0016575: histone deacetylation2.27E-02
163GO:0006418: tRNA aminoacylation for protein translation2.27E-02
164GO:0007017: microtubule-based process2.27E-02
165GO:0061077: chaperone-mediated protein folding2.43E-02
166GO:0003333: amino acid transmembrane transport2.43E-02
167GO:0006096: glycolytic process2.59E-02
168GO:0010017: red or far-red light signaling pathway2.59E-02
169GO:2000022: regulation of jasmonic acid mediated signaling pathway2.59E-02
170GO:0035428: hexose transmembrane transport2.59E-02
171GO:0009723: response to ethylene2.60E-02
172GO:0009686: gibberellin biosynthetic process2.75E-02
173GO:0001944: vasculature development2.75E-02
174GO:0048443: stamen development2.92E-02
175GO:0009306: protein secretion2.92E-02
176GO:0010089: xylem development2.92E-02
177GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.09E-02
178GO:0009416: response to light stimulus3.10E-02
179GO:0018105: peptidyl-serine phosphorylation3.21E-02
180GO:0042631: cellular response to water deprivation3.27E-02
181GO:0000413: protein peptidyl-prolyl isomerization3.27E-02
182GO:0010051: xylem and phloem pattern formation3.27E-02
183GO:0010268: brassinosteroid homeostasis3.45E-02
184GO:0010305: leaf vascular tissue pattern formation3.45E-02
185GO:0048868: pollen tube development3.45E-02
186GO:0046323: glucose import3.45E-02
187GO:0045454: cell redox homeostasis3.55E-02
188GO:0007018: microtubule-based movement3.63E-02
189GO:0048825: cotyledon development3.82E-02
190GO:0019252: starch biosynthetic process3.82E-02
191GO:0080156: mitochondrial mRNA modification4.01E-02
192GO:0006508: proteolysis4.13E-02
193GO:0010583: response to cyclopentenone4.20E-02
194GO:0032259: methylation4.35E-02
195GO:0055085: transmembrane transport4.38E-02
196GO:0030163: protein catabolic process4.39E-02
197GO:0010090: trichome morphogenesis4.39E-02
198GO:0016042: lipid catabolic process4.43E-02
199GO:0009790: embryo development4.53E-02
200GO:0016125: sterol metabolic process4.59E-02
201GO:0009639: response to red or far red light4.59E-02
202GO:0071805: potassium ion transmembrane transport4.79E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0046422: violaxanthin de-epoxidase activity0.00E+00
6GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
7GO:0043014: alpha-tubulin binding0.00E+00
8GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
9GO:0051721: protein phosphatase 2A binding0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
13GO:0004822: isoleucine-tRNA ligase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
16GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
17GO:0005528: FK506 binding2.41E-07
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.74E-06
19GO:0016851: magnesium chelatase activity5.29E-05
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.33E-05
21GO:0004130: cytochrome-c peroxidase activity2.07E-04
22GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.07E-04
23GO:0051777: ent-kaurenoate oxidase activity3.94E-04
24GO:0004856: xylulokinase activity3.94E-04
25GO:0003867: 4-aminobutyrate transaminase activity3.94E-04
26GO:0045485: omega-6 fatty acid desaturase activity3.94E-04
27GO:0043621: protein self-association4.91E-04
28GO:0004047: aminomethyltransferase activity8.55E-04
29GO:0033201: alpha-1,4-glucan synthase activity8.55E-04
30GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.55E-04
31GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.55E-04
32GO:0004802: transketolase activity8.55E-04
33GO:0010283: pinoresinol reductase activity8.55E-04
34GO:0047746: chlorophyllase activity8.55E-04
35GO:0016868: intramolecular transferase activity, phosphotransferases8.55E-04
36GO:0003839: gamma-glutamylcyclotransferase activity8.55E-04
37GO:0016531: copper chaperone activity1.39E-03
38GO:0004373: glycogen (starch) synthase activity1.39E-03
39GO:0019829: cation-transporting ATPase activity1.39E-03
40GO:0050734: hydroxycinnamoyltransferase activity1.39E-03
41GO:0002161: aminoacyl-tRNA editing activity1.39E-03
42GO:0004148: dihydrolipoyl dehydrogenase activity1.39E-03
43GO:0004075: biotin carboxylase activity1.39E-03
44GO:0030267: glyoxylate reductase (NADP) activity1.39E-03
45GO:0005096: GTPase activator activity1.54E-03
46GO:0031409: pigment binding1.91E-03
47GO:0004375: glycine dehydrogenase (decarboxylating) activity2.00E-03
48GO:0019201: nucleotide kinase activity2.00E-03
49GO:0048487: beta-tubulin binding2.00E-03
50GO:0043023: ribosomal large subunit binding2.00E-03
51GO:0015079: potassium ion transmembrane transporter activity2.34E-03
52GO:0004176: ATP-dependent peptidase activity2.57E-03
53GO:0033612: receptor serine/threonine kinase binding2.57E-03
54GO:0010011: auxin binding2.69E-03
55GO:0016836: hydro-lyase activity2.69E-03
56GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.69E-03
57GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.69E-03
58GO:0010328: auxin influx transmembrane transporter activity2.69E-03
59GO:0009011: starch synthase activity2.69E-03
60GO:0009044: xylan 1,4-beta-xylosidase activity2.69E-03
61GO:0046556: alpha-L-arabinofuranosidase activity2.69E-03
62GO:0016787: hydrolase activity2.98E-03
63GO:0008381: mechanically-gated ion channel activity3.44E-03
64GO:0016773: phosphotransferase activity, alcohol group as acceptor3.44E-03
65GO:0017137: Rab GTPase binding3.44E-03
66GO:0003989: acetyl-CoA carboxylase activity3.44E-03
67GO:0004332: fructose-bisphosphate aldolase activity4.26E-03
68GO:0004556: alpha-amylase activity4.26E-03
69GO:0016688: L-ascorbate peroxidase activity4.26E-03
70GO:0042578: phosphoric ester hydrolase activity4.26E-03
71GO:0008200: ion channel inhibitor activity4.26E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.26E-03
73GO:0046872: metal ion binding4.47E-03
74GO:0051920: peroxiredoxin activity5.13E-03
75GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.13E-03
76GO:0004017: adenylate kinase activity5.13E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.13E-03
78GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.13E-03
79GO:0004559: alpha-mannosidase activity5.13E-03
80GO:0048038: quinone binding5.21E-03
81GO:0004601: peroxidase activity5.27E-03
82GO:0051015: actin filament binding5.93E-03
83GO:0004620: phospholipase activity6.06E-03
84GO:0016209: antioxidant activity7.05E-03
85GO:0004033: aldo-keto reductase (NADP) activity7.05E-03
86GO:0015250: water channel activity7.54E-03
87GO:0016168: chlorophyll binding7.98E-03
88GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.09E-03
89GO:0005375: copper ion transmembrane transporter activity8.09E-03
90GO:0008236: serine-type peptidase activity9.37E-03
91GO:0004252: serine-type endopeptidase activity9.43E-03
92GO:0005509: calcium ion binding9.86E-03
93GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.86E-03
94GO:0005381: iron ion transmembrane transporter activity1.03E-02
95GO:0004222: metalloendopeptidase activity1.09E-02
96GO:0047372: acylglycerol lipase activity1.28E-02
97GO:0015386: potassium:proton antiporter activity1.28E-02
98GO:0008378: galactosyltransferase activity1.41E-02
99GO:0000049: tRNA binding1.41E-02
100GO:0005262: calcium channel activity1.54E-02
101GO:0004565: beta-galactosidase activity1.54E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity1.54E-02
103GO:0010329: auxin efflux transmembrane transporter activity1.54E-02
104GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.54E-02
105GO:0031072: heat shock protein binding1.54E-02
106GO:0005515: protein binding1.63E-02
107GO:0008266: poly(U) RNA binding1.68E-02
108GO:0051537: 2 iron, 2 sulfur cluster binding1.75E-02
109GO:0035091: phosphatidylinositol binding1.75E-02
110GO:0015293: symporter activity1.82E-02
111GO:0004407: histone deacetylase activity2.11E-02
112GO:0003714: transcription corepressor activity2.11E-02
113GO:0016788: hydrolase activity, acting on ester bonds2.22E-02
114GO:0003756: protein disulfide isomerase activity2.92E-02
115GO:0003727: single-stranded RNA binding2.92E-02
116GO:0004812: aminoacyl-tRNA ligase activity3.09E-02
117GO:0052689: carboxylic ester hydrolase activity3.21E-02
118GO:0005355: glucose transmembrane transporter activity3.63E-02
119GO:0050662: coenzyme binding3.63E-02
120GO:0005215: transporter activity3.81E-02
121GO:0016762: xyloglucan:xyloglucosyl transferase activity4.01E-02
122GO:0004518: nuclease activity4.20E-02
123GO:0004197: cysteine-type endopeptidase activity4.20E-02
124GO:0016791: phosphatase activity4.59E-02
125GO:0005524: ATP binding4.62E-02
126GO:0008483: transaminase activity4.79E-02
127GO:0005200: structural constituent of cytoskeleton4.79E-02
128GO:0008237: metallopeptidase activity4.79E-02
129GO:0016597: amino acid binding5.00E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0009507: chloroplast4.12E-42
3GO:0009534: chloroplast thylakoid1.70E-40
4GO:0009535: chloroplast thylakoid membrane1.49E-27
5GO:0009941: chloroplast envelope2.68E-21
6GO:0009570: chloroplast stroma4.98E-21
7GO:0009543: chloroplast thylakoid lumen5.47E-17
8GO:0009579: thylakoid1.14E-14
9GO:0031977: thylakoid lumen5.42E-12
10GO:0030095: chloroplast photosystem II9.12E-08
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.65E-07
12GO:0009654: photosystem II oxygen evolving complex1.17E-05
13GO:0010007: magnesium chelatase complex2.42E-05
14GO:0010287: plastoglobule3.75E-05
15GO:0019898: extrinsic component of membrane5.31E-05
16GO:0009533: chloroplast stromal thylakoid3.62E-04
17GO:0009782: photosystem I antenna complex3.94E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]3.94E-04
19GO:0031969: chloroplast membrane4.23E-04
20GO:0048046: apoplast7.59E-04
21GO:0008290: F-actin capping protein complex8.55E-04
22GO:0005884: actin filament1.05E-03
23GO:0009706: chloroplast inner membrane1.17E-03
24GO:0005886: plasma membrane1.25E-03
25GO:0030076: light-harvesting complex1.71E-03
26GO:0009531: secondary cell wall2.00E-03
27GO:0005960: glycine cleavage complex2.00E-03
28GO:0032432: actin filament bundle2.00E-03
29GO:0042651: thylakoid membrane2.34E-03
30GO:0016021: integral component of membrane3.30E-03
31GO:0016020: membrane4.05E-03
32GO:0031209: SCAR complex4.26E-03
33GO:0009523: photosystem II4.86E-03
34GO:0009986: cell surface6.06E-03
35GO:0009505: plant-type cell wall6.39E-03
36GO:0010319: stromule6.71E-03
37GO:0009538: photosystem I reaction center7.05E-03
38GO:0009501: amyloplast7.05E-03
39GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.09E-03
40GO:0042644: chloroplast nucleoid9.18E-03
41GO:0045298: tubulin complex9.18E-03
42GO:0005618: cell wall1.40E-02
43GO:0032040: small-subunit processome1.41E-02
44GO:0009508: plastid chromosome1.54E-02
45GO:0005764: lysosome1.68E-02
46GO:0009536: plastid1.71E-02
47GO:0005871: kinesin complex3.09E-02
48GO:0009522: photosystem I3.63E-02
49GO:0009295: nucleoid4.79E-02
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Gene type



Gene DE type