GO Enrichment Analysis of Co-expressed Genes with
AT3G21260
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 2 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 3 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 4 | GO:0009773: photosynthetic electron transport in photosystem I | 2.17E-09 |
| 5 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.73E-05 |
| 6 | GO:0008152: metabolic process | 2.19E-05 |
| 7 | GO:0015994: chlorophyll metabolic process | 3.17E-05 |
| 8 | GO:0015979: photosynthesis | 6.81E-05 |
| 9 | GO:0006810: transport | 7.58E-05 |
| 10 | GO:0043266: regulation of potassium ion transport | 2.09E-04 |
| 11 | GO:0071370: cellular response to gibberellin stimulus | 2.09E-04 |
| 12 | GO:0031338: regulation of vesicle fusion | 2.09E-04 |
| 13 | GO:0000481: maturation of 5S rRNA | 2.09E-04 |
| 14 | GO:2000021: regulation of ion homeostasis | 2.09E-04 |
| 15 | GO:0010028: xanthophyll cycle | 2.09E-04 |
| 16 | GO:0034337: RNA folding | 2.09E-04 |
| 17 | GO:0006824: cobalt ion transport | 2.09E-04 |
| 18 | GO:0016122: xanthophyll metabolic process | 4.66E-04 |
| 19 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.66E-04 |
| 20 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.66E-04 |
| 21 | GO:0055129: L-proline biosynthetic process | 4.66E-04 |
| 22 | GO:0034755: iron ion transmembrane transport | 4.66E-04 |
| 23 | GO:1900871: chloroplast mRNA modification | 4.66E-04 |
| 24 | GO:0005985: sucrose metabolic process | 7.02E-04 |
| 25 | GO:0090630: activation of GTPase activity | 7.59E-04 |
| 26 | GO:0006000: fructose metabolic process | 7.59E-04 |
| 27 | GO:0006518: peptide metabolic process | 7.59E-04 |
| 28 | GO:1901332: negative regulation of lateral root development | 1.08E-03 |
| 29 | GO:0071484: cellular response to light intensity | 1.08E-03 |
| 30 | GO:0009152: purine ribonucleotide biosynthetic process | 1.08E-03 |
| 31 | GO:0046653: tetrahydrofolate metabolic process | 1.08E-03 |
| 32 | GO:0080170: hydrogen peroxide transmembrane transport | 1.08E-03 |
| 33 | GO:0051781: positive regulation of cell division | 1.44E-03 |
| 34 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.44E-03 |
| 35 | GO:0045727: positive regulation of translation | 1.44E-03 |
| 36 | GO:0006546: glycine catabolic process | 1.44E-03 |
| 37 | GO:0010117: photoprotection | 1.83E-03 |
| 38 | GO:0016120: carotene biosynthetic process | 1.83E-03 |
| 39 | GO:0006561: proline biosynthetic process | 2.26E-03 |
| 40 | GO:0042549: photosystem II stabilization | 2.26E-03 |
| 41 | GO:0006828: manganese ion transport | 2.26E-03 |
| 42 | GO:0010196: nonphotochemical quenching | 3.20E-03 |
| 43 | GO:0032508: DNA duplex unwinding | 3.71E-03 |
| 44 | GO:0010492: maintenance of shoot apical meristem identity | 3.71E-03 |
| 45 | GO:0016559: peroxisome fission | 3.71E-03 |
| 46 | GO:0010439: regulation of glucosinolate biosynthetic process | 3.71E-03 |
| 47 | GO:0018298: protein-chromophore linkage | 3.88E-03 |
| 48 | GO:0032544: plastid translation | 4.24E-03 |
| 49 | GO:0009932: cell tip growth | 4.24E-03 |
| 50 | GO:0006002: fructose 6-phosphate metabolic process | 4.24E-03 |
| 51 | GO:0071482: cellular response to light stimulus | 4.24E-03 |
| 52 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.80E-03 |
| 53 | GO:0048507: meristem development | 4.80E-03 |
| 54 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 4.80E-03 |
| 55 | GO:0010206: photosystem II repair | 4.80E-03 |
| 56 | GO:0006816: calcium ion transport | 6.62E-03 |
| 57 | GO:0009644: response to high light intensity | 6.85E-03 |
| 58 | GO:0005983: starch catabolic process | 7.28E-03 |
| 59 | GO:0042538: hyperosmotic salinity response | 7.95E-03 |
| 60 | GO:0006006: glucose metabolic process | 7.96E-03 |
| 61 | GO:0018107: peptidyl-threonine phosphorylation | 7.96E-03 |
| 62 | GO:0006094: gluconeogenesis | 7.96E-03 |
| 63 | GO:0009767: photosynthetic electron transport chain | 7.96E-03 |
| 64 | GO:0005986: sucrose biosynthetic process | 7.96E-03 |
| 65 | GO:0006364: rRNA processing | 8.54E-03 |
| 66 | GO:0019253: reductive pentose-phosphate cycle | 8.66E-03 |
| 67 | GO:0010030: positive regulation of seed germination | 9.37E-03 |
| 68 | GO:0010053: root epidermal cell differentiation | 9.37E-03 |
| 69 | GO:0007031: peroxisome organization | 9.37E-03 |
| 70 | GO:0006833: water transport | 1.01E-02 |
| 71 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.17E-02 |
| 72 | GO:0016575: histone deacetylation | 1.17E-02 |
| 73 | GO:0007017: microtubule-based process | 1.17E-02 |
| 74 | GO:0061077: chaperone-mediated protein folding | 1.25E-02 |
| 75 | GO:0032259: methylation | 1.35E-02 |
| 76 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.59E-02 |
| 77 | GO:0080022: primary root development | 1.68E-02 |
| 78 | GO:0034220: ion transmembrane transport | 1.68E-02 |
| 79 | GO:0042631: cellular response to water deprivation | 1.68E-02 |
| 80 | GO:0007623: circadian rhythm | 2.11E-02 |
| 81 | GO:0019761: glucosinolate biosynthetic process | 2.15E-02 |
| 82 | GO:1901657: glycosyl compound metabolic process | 2.25E-02 |
| 83 | GO:0010027: thylakoid membrane organization | 2.67E-02 |
| 84 | GO:0042128: nitrate assimilation | 2.89E-02 |
| 85 | GO:0015995: chlorophyll biosynthetic process | 3.00E-02 |
| 86 | GO:0009817: defense response to fungus, incompatible interaction | 3.23E-02 |
| 87 | GO:0010311: lateral root formation | 3.34E-02 |
| 88 | GO:0009409: response to cold | 3.44E-02 |
| 89 | GO:0010218: response to far red light | 3.46E-02 |
| 90 | GO:0009407: toxin catabolic process | 3.46E-02 |
| 91 | GO:0009723: response to ethylene | 3.78E-02 |
| 92 | GO:0009637: response to blue light | 3.82E-02 |
| 93 | GO:0009853: photorespiration | 3.82E-02 |
| 94 | GO:0005975: carbohydrate metabolic process | 4.05E-02 |
| 95 | GO:0006631: fatty acid metabolic process | 4.32E-02 |
| 96 | GO:0010114: response to red light | 4.57E-02 |
| 97 | GO:0009636: response to toxic substance | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 2 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 5 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 6 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 7 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 8 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 9 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 3.17E-05 |
| 10 | GO:0019203: carbohydrate phosphatase activity | 2.09E-04 |
| 11 | GO:0004349: glutamate 5-kinase activity | 2.09E-04 |
| 12 | GO:0050308: sugar-phosphatase activity | 2.09E-04 |
| 13 | GO:0004350: glutamate-5-semialdehyde dehydrogenase activity | 2.09E-04 |
| 14 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 2.09E-04 |
| 15 | GO:0004856: xylulokinase activity | 2.09E-04 |
| 16 | GO:0047746: chlorophyllase activity | 4.66E-04 |
| 17 | GO:0016868: intramolecular transferase activity, phosphotransferases | 4.66E-04 |
| 18 | GO:0005094: Rho GDP-dissociation inhibitor activity | 4.66E-04 |
| 19 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.66E-04 |
| 20 | GO:0005096: GTPase activator activity | 4.83E-04 |
| 21 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 7.59E-04 |
| 22 | GO:0008864: formyltetrahydrofolate deformylase activity | 7.59E-04 |
| 23 | GO:0005528: FK506 binding | 8.63E-04 |
| 24 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.08E-03 |
| 25 | GO:0019201: nucleotide kinase activity | 1.08E-03 |
| 26 | GO:0048487: beta-tubulin binding | 1.08E-03 |
| 27 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.44E-03 |
| 28 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.83E-03 |
| 29 | GO:0017137: Rab GTPase binding | 1.83E-03 |
| 30 | GO:0048038: quinone binding | 2.07E-03 |
| 31 | GO:0008200: ion channel inhibitor activity | 2.26E-03 |
| 32 | GO:2001070: starch binding | 2.26E-03 |
| 33 | GO:0016787: hydrolase activity | 2.64E-03 |
| 34 | GO:0004602: glutathione peroxidase activity | 2.71E-03 |
| 35 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.71E-03 |
| 36 | GO:0004017: adenylate kinase activity | 2.71E-03 |
| 37 | GO:0016168: chlorophyll binding | 3.15E-03 |
| 38 | GO:0004721: phosphoprotein phosphatase activity | 3.50E-03 |
| 39 | GO:0043022: ribosome binding | 3.71E-03 |
| 40 | GO:0004564: beta-fructofuranosidase activity | 3.71E-03 |
| 41 | GO:0004033: aldo-keto reductase (NADP) activity | 3.71E-03 |
| 42 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 4.24E-03 |
| 43 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 4.80E-03 |
| 44 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.80E-03 |
| 45 | GO:0004575: sucrose alpha-glucosidase activity | 5.38E-03 |
| 46 | GO:0005381: iron ion transmembrane transporter activity | 5.38E-03 |
| 47 | GO:0005384: manganese ion transmembrane transporter activity | 5.38E-03 |
| 48 | GO:0005509: calcium ion binding | 5.62E-03 |
| 49 | GO:0008378: galactosyltransferase activity | 7.28E-03 |
| 50 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.39E-03 |
| 51 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.96E-03 |
| 52 | GO:0015095: magnesium ion transmembrane transporter activity | 7.96E-03 |
| 53 | GO:0031072: heat shock protein binding | 7.96E-03 |
| 54 | GO:0008266: poly(U) RNA binding | 8.66E-03 |
| 55 | GO:0031409: pigment binding | 1.01E-02 |
| 56 | GO:0004407: histone deacetylase activity | 1.09E-02 |
| 57 | GO:0004176: ATP-dependent peptidase activity | 1.25E-02 |
| 58 | GO:0022891: substrate-specific transmembrane transporter activity | 1.41E-02 |
| 59 | GO:0003756: protein disulfide isomerase activity | 1.50E-02 |
| 60 | GO:0050662: coenzyme binding | 1.86E-02 |
| 61 | GO:0004518: nuclease activity | 2.15E-02 |
| 62 | GO:0005200: structural constituent of cytoskeleton | 2.46E-02 |
| 63 | GO:0016597: amino acid binding | 2.57E-02 |
| 64 | GO:0051213: dioxygenase activity | 2.67E-02 |
| 65 | GO:0015250: water channel activity | 2.67E-02 |
| 66 | GO:0102483: scopolin beta-glucosidase activity | 3.00E-02 |
| 67 | GO:0008168: methyltransferase activity | 3.15E-02 |
| 68 | GO:0016491: oxidoreductase activity | 3.30E-02 |
| 69 | GO:0015238: drug transmembrane transporter activity | 3.34E-02 |
| 70 | GO:0004222: metalloendopeptidase activity | 3.46E-02 |
| 71 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.58E-02 |
| 72 | GO:0008422: beta-glucosidase activity | 4.07E-02 |
| 73 | GO:0050661: NADP binding | 4.19E-02 |
| 74 | GO:0004364: glutathione transferase activity | 4.45E-02 |
| 75 | GO:0004185: serine-type carboxypeptidase activity | 4.57E-02 |
| 76 | GO:0043621: protein self-association | 4.84E-02 |
| 77 | GO:0015293: symporter activity | 4.97E-02 |
| 78 | GO:0005198: structural molecule activity | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.67E-30 |
| 4 | GO:0009534: chloroplast thylakoid | 1.60E-25 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.11E-22 |
| 6 | GO:0009570: chloroplast stroma | 4.74E-12 |
| 7 | GO:0009941: chloroplast envelope | 1.78E-11 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.39E-10 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 6.88E-08 |
| 10 | GO:0030095: chloroplast photosystem II | 5.78E-07 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 1.59E-06 |
| 12 | GO:0019898: extrinsic component of membrane | 8.25E-06 |
| 13 | GO:0031977: thylakoid lumen | 7.79E-05 |
| 14 | GO:0009579: thylakoid | 1.39E-04 |
| 15 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.09E-04 |
| 16 | GO:0031969: chloroplast membrane | 3.42E-04 |
| 17 | GO:0010287: plastoglobule | 3.69E-04 |
| 18 | GO:0042651: thylakoid membrane | 9.49E-04 |
| 19 | GO:0009531: secondary cell wall | 1.08E-03 |
| 20 | GO:0005775: vacuolar lumen | 1.08E-03 |
| 21 | GO:0005960: glycine cleavage complex | 1.08E-03 |
| 22 | GO:0005779: integral component of peroxisomal membrane | 4.24E-03 |
| 23 | GO:0042644: chloroplast nucleoid | 4.80E-03 |
| 24 | GO:0045298: tubulin complex | 4.80E-03 |
| 25 | GO:0032040: small-subunit processome | 7.28E-03 |
| 26 | GO:0009508: plastid chromosome | 7.96E-03 |
| 27 | GO:0030076: light-harvesting complex | 9.37E-03 |
| 28 | GO:0009706: chloroplast inner membrane | 1.22E-02 |
| 29 | GO:0009522: photosystem I | 1.86E-02 |
| 30 | GO:0009523: photosystem II | 1.96E-02 |
| 31 | GO:0005778: peroxisomal membrane | 2.46E-02 |
| 32 | GO:0010319: stromule | 2.46E-02 |
| 33 | GO:0009295: nucleoid | 2.46E-02 |
| 34 | GO:0009505: plant-type cell wall | 3.07E-02 |
| 35 | GO:0000325: plant-type vacuole | 3.58E-02 |
| 36 | GO:0031902: late endosome membrane | 4.32E-02 |
| 37 | GO:0005773: vacuole | 4.50E-02 |