co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G20790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0042546: cell wall biogenesis	4.18E-05
8	GO:0006633: fatty acid biosynthetic process	5.66E-05
9	GO:0010027: thylakoid membrane organization	9.68E-05
10	GO:0010143: cutin biosynthetic process	1.00E-04
11	GO:0032543: mitochondrial translation	1.27E-04
12	GO:0010411: xyloglucan metabolic process	1.30E-04
13	GO:0016042: lipid catabolic process	1.50E-04
14	GO:0071555: cell wall organization	2.87E-04
15	GO:2000021: regulation of ion homeostasis	3.63E-04
16	GO:0043007: maintenance of rDNA	3.63E-04
17	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	3.63E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	3.63E-04
19	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.63E-04
20	GO:0060627: regulation of vesicle-mediated transport	3.63E-04
21	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.63E-04
22	GO:0006824: cobalt ion transport	3.63E-04
23	GO:0043266: regulation of potassium ion transport	3.63E-04
24	GO:0032544: plastid translation	4.91E-04
25	GO:0010115: regulation of abscisic acid biosynthetic process	7.89E-04
26	GO:0034755: iron ion transmembrane transport	7.89E-04
27	GO:0045717: negative regulation of fatty acid biosynthetic process	7.89E-04
28	GO:0010541: acropetal auxin transport	7.89E-04
29	GO:0009073: aromatic amino acid family biosynthetic process	9.32E-04
30	GO:0015995: chlorophyll biosynthetic process	1.09E-03
31	GO:2001295: malonyl-CoA biosynthetic process	1.28E-03
32	GO:1902448: positive regulation of shade avoidance	1.28E-03
33	GO:0010160: formation of animal organ boundary	1.28E-03
34	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.28E-03
35	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.52E-03
36	GO:0007231: osmosensory signaling pathway	1.84E-03
37	GO:0051639: actin filament network formation	1.84E-03
38	GO:0034059: response to anoxia	1.84E-03
39	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.84E-03
40	GO:0009650: UV protection	1.84E-03
41	GO:0010306: rhamnogalacturonan II biosynthetic process	1.84E-03
42	GO:0010731: protein glutathionylation	1.84E-03
43	GO:0006424: glutamyl-tRNA aminoacylation	1.84E-03
44	GO:0046739: transport of virus in multicellular host	1.84E-03
45	GO:0051764: actin crosslink formation	2.47E-03
46	GO:0006183: GTP biosynthetic process	2.47E-03
47	GO:0000919: cell plate assembly	2.47E-03
48	GO:0033500: carbohydrate homeostasis	2.47E-03
49	GO:0031122: cytoplasmic microtubule organization	2.47E-03
50	GO:0048443: stamen development	2.95E-03
51	GO:0016123: xanthophyll biosynthetic process	3.16E-03
52	GO:0009247: glycolipid biosynthetic process	3.16E-03
53	GO:0000304: response to singlet oxygen	3.16E-03
54	GO:0045038: protein import into chloroplast thylakoid membrane	3.16E-03
55	GO:0042335: cuticle development	3.46E-03
56	GO:0000271: polysaccharide biosynthetic process	3.46E-03
57	GO:0010405: arabinogalactan protein metabolic process	3.91E-03
58	GO:0006751: glutathione catabolic process	3.91E-03
59	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.91E-03
60	GO:0016554: cytidine to uridine editing	3.91E-03
61	GO:0060918: auxin transport	3.91E-03
62	GO:0006796: phosphate-containing compound metabolic process	3.91E-03
63	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.91E-03
64	GO:0010190: cytochrome b6f complex assembly	3.91E-03
65	GO:0006014: D-ribose metabolic process	3.91E-03
66	GO:0009826: unidimensional cell growth	4.11E-03
67	GO:0042254: ribosome biogenesis	4.48E-03
68	GO:0071554: cell wall organization or biogenesis	4.60E-03
69	GO:0000302: response to reactive oxygen species	4.60E-03
70	GO:0010019: chloroplast-nucleus signaling pathway	4.71E-03
71	GO:0042372: phylloquinone biosynthetic process	4.71E-03
72	GO:0009612: response to mechanical stimulus	4.71E-03
73	GO:0006694: steroid biosynthetic process	4.71E-03
74	GO:0010583: response to cyclopentenone	4.91E-03
75	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.56E-03
76	GO:0071669: plant-type cell wall organization or biogenesis	5.56E-03
77	GO:0009645: response to low light intensity stimulus	5.56E-03
78	GO:0045010: actin nucleation	6.46E-03
79	GO:0019375: galactolipid biosynthetic process	6.46E-03
80	GO:0009808: lignin metabolic process	7.41E-03
81	GO:0009932: cell tip growth	7.41E-03
82	GO:0010497: plasmodesmata-mediated intercellular transport	7.41E-03
83	GO:0006526: arginine biosynthetic process	7.41E-03
84	GO:0045454: cell redox homeostasis	7.95E-03
85	GO:0030244: cellulose biosynthetic process	8.69E-03
86	GO:1900865: chloroplast RNA modification	9.46E-03
87	GO:0009834: plant-type secondary cell wall biogenesis	9.60E-03
88	GO:0009407: toxin catabolic process	9.60E-03
89	GO:0043069: negative regulation of programmed cell death	1.05E-02
90	GO:0019538: protein metabolic process	1.05E-02
91	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.05E-02
92	GO:0006535: cysteine biosynthetic process from serine	1.05E-02
93	GO:0016051: carbohydrate biosynthetic process	1.10E-02
94	GO:0034599: cellular response to oxidative stress	1.16E-02
95	GO:0018119: peptidyl-cysteine S-nitrosylation	1.17E-02
96	GO:0009684: indoleacetic acid biosynthetic process	1.17E-02
97	GO:0000038: very long-chain fatty acid metabolic process	1.17E-02
98	GO:0006816: calcium ion transport	1.17E-02
99	GO:0006415: translational termination	1.17E-02
100	GO:0008361: regulation of cell size	1.29E-02
101	GO:0016024: CDP-diacylglycerol biosynthetic process	1.29E-02
102	GO:0010152: pollen maturation	1.29E-02
103	GO:0030036: actin cytoskeleton organization	1.41E-02
104	GO:0010540: basipetal auxin transport	1.53E-02
105	GO:0010207: photosystem II assembly	1.53E-02
106	GO:0009636: response to toxic substance	1.61E-02
107	GO:0010030: positive regulation of seed germination	1.66E-02
108	GO:0070588: calcium ion transmembrane transport	1.66E-02
109	GO:0009664: plant-type cell wall organization	1.80E-02
110	GO:0006833: water transport	1.80E-02
111	GO:0042538: hyperosmotic salinity response	1.80E-02
112	GO:0009658: chloroplast organization	1.85E-02
113	GO:0005992: trehalose biosynthetic process	1.93E-02
114	GO:0019344: cysteine biosynthetic process	1.93E-02
115	GO:0007010: cytoskeleton organization	1.93E-02
116	GO:0051017: actin filament bundle assembly	1.93E-02
117	GO:0005975: carbohydrate metabolic process	2.01E-02
118	GO:0006970: response to osmotic stress	2.03E-02
119	GO:0009860: pollen tube growth	2.03E-02
120	GO:0006418: tRNA aminoacylation for protein translation	2.07E-02
121	GO:0007017: microtubule-based process	2.07E-02
122	GO:0016998: cell wall macromolecule catabolic process	2.22E-02
123	GO:0031408: oxylipin biosynthetic process	2.22E-02
124	GO:0006012: galactose metabolic process	2.52E-02
125	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.52E-02
126	GO:0009411: response to UV	2.52E-02
127	GO:0019722: calcium-mediated signaling	2.67E-02
128	GO:0009306: protein secretion	2.67E-02
129	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.83E-02
130	GO:0009742: brassinosteroid mediated signaling pathway	2.91E-02
131	GO:0034220: ion transmembrane transport	2.99E-02
132	GO:0000413: protein peptidyl-prolyl isomerization	2.99E-02
133	GO:0042631: cellular response to water deprivation	2.99E-02
134	GO:0048868: pollen tube development	3.16E-02
135	GO:0045489: pectin biosynthetic process	3.16E-02
136	GO:0009958: positive gravitropism	3.16E-02
137	GO:0006520: cellular amino acid metabolic process	3.16E-02
138	GO:0010305: leaf vascular tissue pattern formation	3.16E-02
139	GO:0019252: starch biosynthetic process	3.49E-02
140	GO:0016132: brassinosteroid biosynthetic process	3.67E-02
141	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.67E-02
142	GO:0002229: defense response to oomycetes	3.67E-02
143	GO:0007264: small GTPase mediated signal transduction	3.84E-02
144	GO:0042744: hydrogen peroxide catabolic process	3.91E-02
145	GO:0010090: trichome morphogenesis	4.02E-02
146	GO:0009828: plant-type cell wall loosening	4.20E-02
147	GO:0009567: double fertilization forming a zygote and endosperm	4.20E-02
148	GO:0009639: response to red or far red light	4.20E-02
149	GO:0009793: embryo development ending in seed dormancy	4.39E-02
150	GO:0007267: cell-cell signaling	4.39E-02
151	GO:0008152: metabolic process	4.44E-02
152	GO:0051607: defense response to virus	4.57E-02
153	GO:0016126: sterol biosynthetic process	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0038198: auxin receptor activity	0.00E+00
7	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
8	GO:0050613: delta14-sterol reductase activity	0.00E+00
9	GO:0004823: leucine-tRNA ligase activity	0.00E+00
10	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
11	GO:0005528: FK506 binding	1.72E-07
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.99E-06
13	GO:0052689: carboxylic ester hydrolase activity	9.96E-06
14	GO:0016788: hydrolase activity, acting on ester bonds	3.19E-05
15	GO:0016851: magnesium chelatase activity	4.58E-05
16	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.79E-05
17	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.30E-04
18	GO:0004130: cytochrome-c peroxidase activity	1.82E-04
19	GO:0051920: peroxiredoxin activity	2.46E-04
20	GO:0051753: mannan synthase activity	2.46E-04
21	GO:0019843: rRNA binding	2.48E-04
22	GO:0004328: formamidase activity	3.63E-04
23	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.63E-04
24	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.63E-04
25	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.63E-04
26	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.63E-04
27	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.63E-04
28	GO:0080132: fatty acid alpha-hydroxylase activity	3.63E-04
29	GO:0008568: microtubule-severing ATPase activity	3.63E-04
30	GO:0016209: antioxidant activity	4.01E-04
31	GO:0003839: gamma-glutamylcyclotransferase activity	7.89E-04
32	GO:0003938: IMP dehydrogenase activity	7.89E-04
33	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	7.89E-04
34	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	7.89E-04
35	GO:0000822: inositol hexakisphosphate binding	7.89E-04
36	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.16E-03
37	GO:0004565: beta-galactosidase activity	1.20E-03
38	GO:0030267: glyoxylate reductase (NADP) activity	1.28E-03
39	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.28E-03
40	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.28E-03
41	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.28E-03
42	GO:0050734: hydroxycinnamoyltransferase activity	1.28E-03
43	GO:0002161: aminoacyl-tRNA editing activity	1.28E-03
44	GO:0004148: dihydrolipoyl dehydrogenase activity	1.28E-03
45	GO:0004075: biotin carboxylase activity	1.28E-03
46	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.28E-03
47	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.69E-03
48	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.69E-03
49	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.69E-03
50	GO:0001872: (1->3)-beta-D-glucan binding	1.84E-03
51	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.84E-03
52	GO:0035250: UDP-galactosyltransferase activity	1.84E-03
53	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.84E-03
54	GO:0016149: translation release factor activity, codon specific	1.84E-03
55	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.84E-03
56	GO:0004364: glutathione transferase activity	2.19E-03
57	GO:0010011: auxin binding	2.47E-03
58	GO:0016836: hydro-lyase activity	2.47E-03
59	GO:0004045: aminoacyl-tRNA hydrolase activity	2.47E-03
60	GO:0052793: pectin acetylesterase activity	2.47E-03
61	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.47E-03
62	GO:0046527: glucosyltransferase activity	2.47E-03
63	GO:0003989: acetyl-CoA carboxylase activity	3.16E-03
64	GO:0004040: amidase activity	3.16E-03
65	GO:0008200: ion channel inhibitor activity	3.91E-03
66	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.91E-03
67	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.91E-03
68	GO:0004629: phospholipase C activity	3.91E-03
69	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.91E-03
70	GO:0016208: AMP binding	3.91E-03
71	GO:0016688: L-ascorbate peroxidase activity	3.91E-03
72	GO:0004124: cysteine synthase activity	4.71E-03
73	GO:0004747: ribokinase activity	4.71E-03
74	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.71E-03
75	GO:0004435: phosphatidylinositol phospholipase C activity	4.71E-03
76	GO:0005516: calmodulin binding	5.06E-03
77	GO:0004427: inorganic diphosphatase activity	5.56E-03
78	GO:0043295: glutathione binding	5.56E-03
79	GO:0016413: O-acetyltransferase activity	6.28E-03
80	GO:0008312: 7S RNA binding	6.46E-03
81	GO:0004034: aldose 1-epimerase activity	6.46E-03
82	GO:0004033: aldo-keto reductase (NADP) activity	6.46E-03
83	GO:0008865: fructokinase activity	6.46E-03
84	GO:0016758: transferase activity, transferring hexosyl groups	6.80E-03
85	GO:0003747: translation release factor activity	8.41E-03
86	GO:0004871: signal transducer activity	8.53E-03
87	GO:0047617: acyl-CoA hydrolase activity	9.46E-03
88	GO:0005381: iron ion transmembrane transporter activity	9.46E-03
89	GO:0004805: trehalose-phosphatase activity	1.05E-02
90	GO:0003924: GTPase activity	1.09E-02
91	GO:0047372: acylglycerol lipase activity	1.17E-02
92	GO:0008378: galactosyltransferase activity	1.29E-02
93	GO:0005262: calcium channel activity	1.41E-02
94	GO:0010329: auxin efflux transmembrane transporter activity	1.41E-02
95	GO:0004601: peroxidase activity	1.85E-02
96	GO:0004857: enzyme inhibitor activity	1.93E-02
97	GO:0008324: cation transmembrane transporter activity	2.07E-02
98	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.37E-02
99	GO:0016760: cellulose synthase (UDP-forming) activity	2.52E-02
100	GO:0008514: organic anion transmembrane transporter activity	2.67E-02
101	GO:0004812: aminoacyl-tRNA ligase activity	2.83E-02
102	GO:0016853: isomerase activity	3.32E-02
103	GO:0019901: protein kinase binding	3.49E-02
104	GO:0016787: hydrolase activity	3.82E-02
105	GO:0051015: actin filament binding	4.02E-02
106	GO:0016491: oxidoreductase activity	4.13E-02
107	GO:0016791: phosphatase activity	4.20E-02
108	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.39E-02
109	GO:0005200: structural constituent of cytoskeleton	4.39E-02
110	GO:0016597: amino acid binding	4.57E-02
111	GO:0015250: water channel activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.80E-15
2	GO:0009507: chloroplast	5.59E-15
3	GO:0009543: chloroplast thylakoid lumen	1.81E-11
4	GO:0031977: thylakoid lumen	3.23E-09
5	GO:0009941: chloroplast envelope	3.49E-09
6	GO:0009534: chloroplast thylakoid	1.53E-07
7	GO:0009535: chloroplast thylakoid membrane	7.94E-07
8	GO:0048046: apoplast	2.86E-06
9	GO:0009505: plant-type cell wall	6.89E-06
10	GO:0010007: magnesium chelatase complex	2.08E-05
11	GO:0009579: thylakoid	5.54E-05
12	GO:0031225: anchored component of membrane	1.32E-04
13	GO:0046658: anchored component of plasma membrane	1.42E-04
14	GO:0005618: cell wall	2.44E-04
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.63E-04
16	GO:0005886: plasma membrane	7.72E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	7.89E-04
18	GO:0009509: chromoplast	1.28E-03
19	GO:0032432: actin filament bundle	1.84E-03
20	GO:0005576: extracellular region	3.10E-03
21	GO:0031209: SCAR complex	3.91E-03
22	GO:0009536: plastid	4.65E-03
23	GO:0009533: chloroplast stromal thylakoid	5.56E-03
24	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.41E-03
25	GO:0045298: tubulin complex	8.41E-03
26	GO:0000151: ubiquitin ligase complex	8.69E-03
27	GO:0005884: actin filament	1.17E-02
28	GO:0000311: plastid large ribosomal subunit	1.29E-02
29	GO:0000139: Golgi membrane	1.62E-02
30	GO:0030176: integral component of endoplasmic reticulum membrane	1.66E-02
31	GO:0005875: microtubule associated complex	1.80E-02
32	GO:0043234: protein complex	1.80E-02
33	GO:0016020: membrane	2.16E-02
34	GO:0005840: ribosome	2.84E-02
35	GO:0016021: integral component of membrane	2.96E-02
36	GO:0010287: plastoglobule	3.26E-02
37	GO:0005778: peroxisomal membrane	4.39E-02
38	GO:0030529: intracellular ribonucleoprotein complex	4.76E-02