co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G20270

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060416: response to growth hormone	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0043007: maintenance of rDNA	3.37E-05
5	GO:0018026: peptidyl-lysine monomethylation	8.48E-05
6	GO:0080148: negative regulation of response to water deprivation	8.48E-05
7	GO:0006954: inflammatory response	1.47E-04
8	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.47E-04
9	GO:0046739: transport of virus in multicellular host	2.18E-04
10	GO:0010239: chloroplast mRNA processing	2.18E-04
11	GO:0016556: mRNA modification	2.18E-04
12	GO:0006808: regulation of nitrogen utilization	2.95E-04
13	GO:0006749: glutathione metabolic process	2.95E-04
14	GO:0009793: embryo development ending in seed dormancy	3.63E-04
15	GO:0032543: mitochondrial translation	3.77E-04
16	GO:0006564: L-serine biosynthetic process	3.77E-04
17	GO:0045038: protein import into chloroplast thylakoid membrane	3.77E-04
18	GO:0048527: lateral root development	4.23E-04
19	GO:0042793: transcription from plastid promoter	4.63E-04
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.63E-04
21	GO:0016554: cytidine to uridine editing	4.63E-04
22	GO:0042372: phylloquinone biosynthetic process	5.53E-04
23	GO:1901259: chloroplast rRNA processing	5.53E-04
24	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.47E-04
25	GO:0009690: cytokinin metabolic process	7.44E-04
26	GO:0010078: maintenance of root meristem identity	7.44E-04
27	GO:0009704: de-etiolation	7.44E-04
28	GO:0006353: DNA-templated transcription, termination	7.44E-04
29	GO:0032544: plastid translation	8.45E-04
30	GO:0043562: cellular response to nitrogen levels	8.45E-04
31	GO:0010497: plasmodesmata-mediated intercellular transport	8.45E-04
32	GO:1900865: chloroplast RNA modification	1.06E-03
33	GO:0009073: aromatic amino acid family biosynthetic process	1.28E-03
34	GO:0018119: peptidyl-cysteine S-nitrosylation	1.28E-03
35	GO:0009684: indoleacetic acid biosynthetic process	1.28E-03
36	GO:0010588: cotyledon vascular tissue pattern formation	1.52E-03
37	GO:0048467: gynoecium development	1.65E-03
38	GO:0010020: chloroplast fission	1.65E-03
39	GO:0006833: water transport	1.91E-03
40	GO:0006418: tRNA aminoacylation for protein translation	2.19E-03
41	GO:0016114: terpenoid biosynthetic process	2.33E-03
42	GO:0080022: primary root development	3.09E-03
43	GO:0034220: ion transmembrane transport	3.09E-03
44	GO:0010087: phloem or xylem histogenesis	3.09E-03
45	GO:0009958: positive gravitropism	3.25E-03
46	GO:0048825: cotyledon development	3.59E-03
47	GO:0009851: auxin biosynthetic process	3.59E-03
48	GO:0032502: developmental process	3.93E-03
49	GO:0010027: thylakoid membrane organization	4.83E-03
50	GO:0000160: phosphorelay signal transduction system	5.99E-03
51	GO:0009407: toxin catabolic process	6.20E-03
52	GO:0006412: translation	6.44E-03
53	GO:0006839: mitochondrial transport	7.47E-03
54	GO:0051707: response to other organism	8.14E-03
55	GO:0009636: response to toxic substance	8.82E-03
56	GO:0009736: cytokinin-activated signaling pathway	1.00E-02
57	GO:0006813: potassium ion transport	1.00E-02
58	GO:0051603: proteolysis involved in cellular protein catabolic process	1.03E-02
59	GO:0006096: glycolytic process	1.13E-02
60	GO:0048367: shoot system development	1.15E-02
61	GO:0009742: brassinosteroid mediated signaling pathway	1.34E-02
62	GO:0040008: regulation of growth	1.83E-02
63	GO:0042742: defense response to bacterium	1.87E-02
64	GO:0009451: RNA modification	1.92E-02
65	GO:0009739: response to gibberellin	2.05E-02
66	GO:0009658: chloroplast organization	2.58E-02
67	GO:0042254: ribosome biogenesis	2.62E-02
68	GO:0006810: transport	2.75E-02
69	GO:0009723: response to ethylene	2.87E-02
70	GO:0080167: response to karrikin	3.01E-02
71	GO:0055114: oxidation-reduction process	3.24E-02
72	GO:0015979: photosynthesis	3.31E-02
73	GO:0045454: cell redox homeostasis	3.42E-02
74	GO:0016042: lipid catabolic process	3.89E-02
75	GO:0006281: DNA repair	3.97E-02
76	GO:0016310: phosphorylation	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0004823: leucine-tRNA ligase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
5	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.48E-05
6	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.48E-05
7	GO:0004617: phosphoglycerate dehydrogenase activity	8.48E-05
8	GO:0019843: rRNA binding	1.06E-04
9	GO:0017150: tRNA dihydrouridine synthase activity	1.47E-04
10	GO:0002161: aminoacyl-tRNA editing activity	1.47E-04
11	GO:0008097: 5S rRNA binding	2.18E-04
12	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.18E-04
13	GO:0016279: protein-lysine N-methyltransferase activity	2.95E-04
14	GO:0016846: carbon-sulfur lyase activity	3.77E-04
15	GO:0016208: AMP binding	4.63E-04
16	GO:0051920: peroxiredoxin activity	5.53E-04
17	GO:0004519: endonuclease activity	7.26E-04
18	GO:0016209: antioxidant activity	7.44E-04
19	GO:0008312: 7S RNA binding	7.44E-04
20	GO:0003735: structural constituent of ribosome	1.50E-03
21	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.65E-03
22	GO:0008324: cation transmembrane transporter activity	2.19E-03
23	GO:0004812: aminoacyl-tRNA ligase activity	2.94E-03
24	GO:0050662: coenzyme binding	3.42E-03
25	GO:0000156: phosphorelay response regulator activity	4.10E-03
26	GO:0016597: amino acid binding	4.64E-03
27	GO:0015250: water channel activity	4.83E-03
28	GO:0004364: glutathione transferase activity	7.91E-03
29	GO:0004185: serine-type carboxypeptidase activity	8.14E-03
30	GO:0043621: protein self-association	8.60E-03
31	GO:0051287: NAD binding	9.30E-03
32	GO:0003723: RNA binding	1.19E-02
33	GO:0046983: protein dimerization activity	2.50E-02
34	GO:0000287: magnesium ion binding	2.55E-02
35	GO:0004601: peroxidase activity	2.58E-02
36	GO:0016788: hydrolase activity, acting on ester bonds	2.62E-02
37	GO:0050660: flavin adenine dinucleotide binding	2.87E-02
38	GO:0052689: carboxylic ester hydrolase activity	3.23E-02
39	GO:0042803: protein homodimerization activity	3.54E-02
40	GO:0003924: GTPase activity	3.97E-02
41	GO:0009055: electron carrier activity	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.92E-13
2	GO:0009570: chloroplast stroma	1.26E-07
3	GO:0009941: chloroplast envelope	4.62E-06
4	GO:0009508: plastid chromosome	4.16E-05
5	GO:0080085: signal recognition particle, chloroplast targeting	8.48E-05
6	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.48E-05
7	GO:0009295: nucleoid	2.49E-04
8	GO:0005840: ribosome	5.74E-04
9	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.45E-04
10	GO:0009536: plastid	4.16E-03
11	GO:0005778: peroxisomal membrane	4.46E-03
12	GO:0043231: intracellular membrane-bounded organelle	5.71E-03
13	GO:0015934: large ribosomal subunit	6.40E-03
14	GO:0009579: thylakoid	1.10E-02
15	GO:0009534: chloroplast thylakoid	1.11E-02
16	GO:0009706: chloroplast inner membrane	1.28E-02
17	GO:0010287: plastoglobule	1.45E-02
18	GO:0009543: chloroplast thylakoid lumen	1.51E-02
19	GO:0005615: extracellular space	2.05E-02
20	GO:0031969: chloroplast membrane	3.01E-02
21	GO:0022625: cytosolic large ribosomal subunit	3.12E-02
22	GO:0005743: mitochondrial inner membrane	3.77E-02
23	GO:0005887: integral component of plasma membrane	4.94E-02