GO Enrichment Analysis of Co-expressed Genes with
AT3G18980
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0060416: response to growth hormone | 0.00E+00 |
| 2 | GO:0099131: ATP hydrolysis coupled ion transmembrane transport | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:1900000: regulation of anthocyanin catabolic process | 0.00E+00 |
| 6 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 7 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 9 | GO:0032544: plastid translation | 4.60E-08 |
| 10 | GO:0032543: mitochondrial translation | 5.28E-05 |
| 11 | GO:0006412: translation | 1.08E-04 |
| 12 | GO:0010444: guard mother cell differentiation | 1.42E-04 |
| 13 | GO:0070509: calcium ion import | 2.13E-04 |
| 14 | GO:0007263: nitric oxide mediated signal transduction | 2.13E-04 |
| 15 | GO:0043266: regulation of potassium ion transport | 2.13E-04 |
| 16 | GO:0006723: cuticle hydrocarbon biosynthetic process | 2.13E-04 |
| 17 | GO:0042547: cell wall modification involved in multidimensional cell growth | 2.13E-04 |
| 18 | GO:2000021: regulation of ion homeostasis | 2.13E-04 |
| 19 | GO:0034628: 'de novo' NAD biosynthetic process from aspartate | 2.13E-04 |
| 20 | GO:0043007: maintenance of rDNA | 2.13E-04 |
| 21 | GO:0010206: photosystem II repair | 2.74E-04 |
| 22 | GO:0009735: response to cytokinin | 3.98E-04 |
| 23 | GO:0016560: protein import into peroxisome matrix, docking | 4.76E-04 |
| 24 | GO:1901679: nucleotide transmembrane transport | 4.76E-04 |
| 25 | GO:0045717: negative regulation of fatty acid biosynthetic process | 4.76E-04 |
| 26 | GO:0080148: negative regulation of response to water deprivation | 4.76E-04 |
| 27 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.76E-04 |
| 28 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.76E-04 |
| 29 | GO:0048527: lateral root development | 5.67E-04 |
| 30 | GO:0009767: photosynthetic electron transport chain | 5.75E-04 |
| 31 | GO:0080121: AMP transport | 7.74E-04 |
| 32 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 7.74E-04 |
| 33 | GO:0006954: inflammatory response | 7.74E-04 |
| 34 | GO:0006518: peptide metabolic process | 7.74E-04 |
| 35 | GO:0051176: positive regulation of sulfur metabolic process | 7.74E-04 |
| 36 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 7.74E-04 |
| 37 | GO:0043447: alkane biosynthetic process | 7.74E-04 |
| 38 | GO:0006418: tRNA aminoacylation for protein translation | 9.78E-04 |
| 39 | GO:0009793: embryo development ending in seed dormancy | 1.08E-03 |
| 40 | GO:0016556: mRNA modification | 1.10E-03 |
| 41 | GO:0006424: glutamyl-tRNA aminoacylation | 1.10E-03 |
| 42 | GO:0055070: copper ion homeostasis | 1.10E-03 |
| 43 | GO:2001141: regulation of RNA biosynthetic process | 1.10E-03 |
| 44 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.10E-03 |
| 45 | GO:0042254: ribosome biogenesis | 1.37E-03 |
| 46 | GO:0006749: glutathione metabolic process | 1.47E-03 |
| 47 | GO:0015867: ATP transport | 1.47E-03 |
| 48 | GO:0006808: regulation of nitrogen utilization | 1.47E-03 |
| 49 | GO:0009741: response to brassinosteroid | 1.73E-03 |
| 50 | GO:0006564: L-serine biosynthetic process | 1.87E-03 |
| 51 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.87E-03 |
| 52 | GO:0035434: copper ion transmembrane transport | 1.87E-03 |
| 53 | GO:0009435: NAD biosynthetic process | 1.87E-03 |
| 54 | GO:0032973: amino acid export | 2.31E-03 |
| 55 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.31E-03 |
| 56 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 2.31E-03 |
| 57 | GO:0035435: phosphate ion transmembrane transport | 2.31E-03 |
| 58 | GO:0010190: cytochrome b6f complex assembly | 2.31E-03 |
| 59 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.31E-03 |
| 60 | GO:0010405: arabinogalactan protein metabolic process | 2.31E-03 |
| 61 | GO:0006751: glutathione catabolic process | 2.31E-03 |
| 62 | GO:0015866: ADP transport | 2.31E-03 |
| 63 | GO:0016554: cytidine to uridine editing | 2.31E-03 |
| 64 | GO:0006828: manganese ion transport | 2.31E-03 |
| 65 | GO:0042372: phylloquinone biosynthetic process | 2.77E-03 |
| 66 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.77E-03 |
| 67 | GO:0098655: cation transmembrane transport | 2.77E-03 |
| 68 | GO:0051510: regulation of unidimensional cell growth | 3.26E-03 |
| 69 | GO:0043090: amino acid import | 3.26E-03 |
| 70 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.26E-03 |
| 71 | GO:0040008: regulation of growth | 3.72E-03 |
| 72 | GO:0009690: cytokinin metabolic process | 3.78E-03 |
| 73 | GO:0010078: maintenance of root meristem identity | 3.78E-03 |
| 74 | GO:0009704: de-etiolation | 3.78E-03 |
| 75 | GO:0008610: lipid biosynthetic process | 3.78E-03 |
| 76 | GO:0043562: cellular response to nitrogen levels | 4.33E-03 |
| 77 | GO:0017004: cytochrome complex assembly | 4.33E-03 |
| 78 | GO:0009932: cell tip growth | 4.33E-03 |
| 79 | GO:0071482: cellular response to light stimulus | 4.33E-03 |
| 80 | GO:0080144: amino acid homeostasis | 4.90E-03 |
| 81 | GO:0009060: aerobic respiration | 4.90E-03 |
| 82 | GO:0098656: anion transmembrane transport | 4.90E-03 |
| 83 | GO:1900865: chloroplast RNA modification | 5.50E-03 |
| 84 | GO:0030001: metal ion transport | 5.77E-03 |
| 85 | GO:0006839: mitochondrial transport | 5.77E-03 |
| 86 | GO:0006535: cysteine biosynthetic process from serine | 6.12E-03 |
| 87 | GO:0009826: unidimensional cell growth | 6.55E-03 |
| 88 | GO:0006415: translational termination | 6.77E-03 |
| 89 | GO:0009073: aromatic amino acid family biosynthetic process | 6.77E-03 |
| 90 | GO:0006352: DNA-templated transcription, initiation | 6.77E-03 |
| 91 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.77E-03 |
| 92 | GO:0016485: protein processing | 6.77E-03 |
| 93 | GO:0009684: indoleacetic acid biosynthetic process | 6.77E-03 |
| 94 | GO:0006816: calcium ion transport | 6.77E-03 |
| 95 | GO:0009658: chloroplast organization | 6.87E-03 |
| 96 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.44E-03 |
| 97 | GO:0050826: response to freezing | 8.13E-03 |
| 98 | GO:0010588: cotyledon vascular tissue pattern formation | 8.13E-03 |
| 99 | GO:0010207: photosystem II assembly | 8.84E-03 |
| 100 | GO:0048467: gynoecium development | 8.84E-03 |
| 101 | GO:0010025: wax biosynthetic process | 1.03E-02 |
| 102 | GO:0006833: water transport | 1.03E-02 |
| 103 | GO:0006096: glycolytic process | 1.04E-02 |
| 104 | GO:0048316: seed development | 1.08E-02 |
| 105 | GO:0019344: cysteine biosynthetic process | 1.11E-02 |
| 106 | GO:0019915: lipid storage | 1.27E-02 |
| 107 | GO:0009742: brassinosteroid mediated signaling pathway | 1.33E-02 |
| 108 | GO:0009814: defense response, incompatible interaction | 1.36E-02 |
| 109 | GO:0035428: hexose transmembrane transport | 1.36E-02 |
| 110 | GO:0016226: iron-sulfur cluster assembly | 1.36E-02 |
| 111 | GO:0040007: growth | 1.45E-02 |
| 112 | GO:0042127: regulation of cell proliferation | 1.53E-02 |
| 113 | GO:0042335: cuticle development | 1.72E-02 |
| 114 | GO:0042391: regulation of membrane potential | 1.72E-02 |
| 115 | GO:0080022: primary root development | 1.72E-02 |
| 116 | GO:0034220: ion transmembrane transport | 1.72E-02 |
| 117 | GO:0010087: phloem or xylem histogenesis | 1.72E-02 |
| 118 | GO:0042631: cellular response to water deprivation | 1.72E-02 |
| 119 | GO:0009958: positive gravitropism | 1.81E-02 |
| 120 | GO:0046323: glucose import | 1.81E-02 |
| 121 | GO:0048825: cotyledon development | 2.00E-02 |
| 122 | GO:0009851: auxin biosynthetic process | 2.00E-02 |
| 123 | GO:0009791: post-embryonic development | 2.00E-02 |
| 124 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 2.10E-02 |
| 125 | GO:0045490: pectin catabolic process | 2.18E-02 |
| 126 | GO:0048235: pollen sperm cell differentiation | 2.20E-02 |
| 127 | GO:0009451: RNA modification | 2.23E-02 |
| 128 | GO:0030163: protein catabolic process | 2.31E-02 |
| 129 | GO:0009567: double fertilization forming a zygote and endosperm | 2.41E-02 |
| 130 | GO:0010027: thylakoid membrane organization | 2.73E-02 |
| 131 | GO:0015995: chlorophyll biosynthetic process | 3.07E-02 |
| 132 | GO:0048481: plant ovule development | 3.30E-02 |
| 133 | GO:0030244: cellulose biosynthetic process | 3.30E-02 |
| 134 | GO:0018298: protein-chromophore linkage | 3.30E-02 |
| 135 | GO:0000160: phosphorelay signal transduction system | 3.42E-02 |
| 136 | GO:0009407: toxin catabolic process | 3.54E-02 |
| 137 | GO:0009723: response to ethylene | 3.89E-02 |
| 138 | GO:0016051: carbohydrate biosynthetic process | 3.91E-02 |
| 139 | GO:0009637: response to blue light | 3.91E-02 |
| 140 | GO:0006810: transport | 4.04E-02 |
| 141 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.31E-02 |
| 142 | GO:0009640: photomorphogenesis | 4.68E-02 |
| 143 | GO:0010114: response to red light | 4.68E-02 |
| 144 | GO:0051707: response to other organism | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0005048: signal sequence binding | 0.00E+00 |
| 5 | GO:0005222: intracellular cAMP activated cation channel activity | 0.00E+00 |
| 6 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 7 | GO:0008987: quinolinate synthetase A activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 7.55E-09 |
| 9 | GO:0002161: aminoacyl-tRNA editing activity | 7.85E-06 |
| 10 | GO:0003735: structural constituent of ribosome | 8.99E-06 |
| 11 | GO:0080062: cytokinin 9-beta-glucosyltransferase activity | 2.13E-04 |
| 12 | GO:0005221: intracellular cyclic nucleotide activated cation channel activity | 2.13E-04 |
| 13 | GO:0047807: cytokinin 7-beta-glucosyltransferase activity | 2.13E-04 |
| 14 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.13E-04 |
| 15 | GO:0008236: serine-type peptidase activity | 4.41E-04 |
| 16 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 4.76E-04 |
| 17 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 4.76E-04 |
| 18 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.76E-04 |
| 19 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 4.76E-04 |
| 20 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.76E-04 |
| 21 | GO:0004252: serine-type endopeptidase activity | 4.96E-04 |
| 22 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.74E-04 |
| 23 | GO:0030267: glyoxylate reductase (NADP) activity | 7.74E-04 |
| 24 | GO:0016531: copper chaperone activity | 7.74E-04 |
| 25 | GO:0019829: cation-transporting ATPase activity | 7.74E-04 |
| 26 | GO:0017150: tRNA dihydrouridine synthase activity | 7.74E-04 |
| 27 | GO:0003913: DNA photolyase activity | 7.74E-04 |
| 28 | GO:0005528: FK506 binding | 8.90E-04 |
| 29 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.06E-03 |
| 30 | GO:0016851: magnesium chelatase activity | 1.10E-03 |
| 31 | GO:0016149: translation release factor activity, codon specific | 1.10E-03 |
| 32 | GO:0008097: 5S rRNA binding | 1.10E-03 |
| 33 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.10E-03 |
| 34 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.47E-03 |
| 35 | GO:0001053: plastid sigma factor activity | 1.47E-03 |
| 36 | GO:0016836: hydro-lyase activity | 1.47E-03 |
| 37 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.47E-03 |
| 38 | GO:0016987: sigma factor activity | 1.47E-03 |
| 39 | GO:0004812: aminoacyl-tRNA ligase activity | 1.49E-03 |
| 40 | GO:0080122: AMP transmembrane transporter activity | 1.87E-03 |
| 41 | GO:0016846: carbon-sulfur lyase activity | 1.87E-03 |
| 42 | GO:0042578: phosphoric ester hydrolase activity | 2.31E-03 |
| 43 | GO:0016208: AMP binding | 2.31E-03 |
| 44 | GO:0008200: ion channel inhibitor activity | 2.31E-03 |
| 45 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 2.31E-03 |
| 46 | GO:0005261: cation channel activity | 2.77E-03 |
| 47 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.77E-03 |
| 48 | GO:0005347: ATP transmembrane transporter activity | 2.77E-03 |
| 49 | GO:0005242: inward rectifier potassium channel activity | 2.77E-03 |
| 50 | GO:0015217: ADP transmembrane transporter activity | 2.77E-03 |
| 51 | GO:0004124: cysteine synthase activity | 2.77E-03 |
| 52 | GO:0051920: peroxiredoxin activity | 2.77E-03 |
| 53 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.77E-03 |
| 54 | GO:0016597: amino acid binding | 2.90E-03 |
| 55 | GO:0009881: photoreceptor activity | 3.26E-03 |
| 56 | GO:0004033: aldo-keto reductase (NADP) activity | 3.78E-03 |
| 57 | GO:0016209: antioxidant activity | 3.78E-03 |
| 58 | GO:0008312: 7S RNA binding | 3.78E-03 |
| 59 | GO:0004519: endonuclease activity | 3.80E-03 |
| 60 | GO:0005375: copper ion transmembrane transporter activity | 4.33E-03 |
| 61 | GO:0003747: translation release factor activity | 4.90E-03 |
| 62 | GO:0005384: manganese ion transmembrane transporter activity | 5.50E-03 |
| 63 | GO:0008047: enzyme activator activity | 6.12E-03 |
| 64 | GO:0015020: glucuronosyltransferase activity | 6.12E-03 |
| 65 | GO:0000049: tRNA binding | 7.44E-03 |
| 66 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 8.13E-03 |
| 67 | GO:0004022: alcohol dehydrogenase (NAD) activity | 8.13E-03 |
| 68 | GO:0015095: magnesium ion transmembrane transporter activity | 8.13E-03 |
| 69 | GO:0005262: calcium channel activity | 8.13E-03 |
| 70 | GO:0015114: phosphate ion transmembrane transporter activity | 8.13E-03 |
| 71 | GO:0008266: poly(U) RNA binding | 8.84E-03 |
| 72 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 8.84E-03 |
| 73 | GO:0030552: cAMP binding | 9.58E-03 |
| 74 | GO:0030553: cGMP binding | 9.58E-03 |
| 75 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.15E-02 |
| 76 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.15E-02 |
| 77 | GO:0005216: ion channel activity | 1.19E-02 |
| 78 | GO:0004176: ATP-dependent peptidase activity | 1.27E-02 |
| 79 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.27E-02 |
| 80 | GO:0030570: pectate lyase activity | 1.45E-02 |
| 81 | GO:0030551: cyclic nucleotide binding | 1.72E-02 |
| 82 | GO:0015144: carbohydrate transmembrane transporter activity | 1.89E-02 |
| 83 | GO:0005355: glucose transmembrane transporter activity | 1.91E-02 |
| 84 | GO:0005351: sugar:proton symporter activity | 2.13E-02 |
| 85 | GO:0004518: nuclease activity | 2.20E-02 |
| 86 | GO:0000156: phosphorelay response regulator activity | 2.31E-02 |
| 87 | GO:0008194: UDP-glycosyltransferase activity | 2.44E-02 |
| 88 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.52E-02 |
| 89 | GO:0015250: water channel activity | 2.73E-02 |
| 90 | GO:0008375: acetylglucosaminyltransferase activity | 2.95E-02 |
| 91 | GO:0004601: peroxidase activity | 3.37E-02 |
| 92 | GO:0015238: drug transmembrane transporter activity | 3.42E-02 |
| 93 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.54E-02 |
| 94 | GO:0004222: metalloendopeptidase activity | 3.54E-02 |
| 95 | GO:0016740: transferase activity | 3.90E-02 |
| 96 | GO:0004672: protein kinase activity | 4.04E-02 |
| 97 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.29E-02 |
| 98 | GO:0003723: RNA binding | 4.29E-02 |
| 99 | GO:0004364: glutathione transferase activity | 4.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043233: organelle lumen | 0.00E+00 |
| 2 | GO:0009571: proplastid stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.35E-21 |
| 4 | GO:0009570: chloroplast stroma | 4.41E-21 |
| 5 | GO:0009941: chloroplast envelope | 2.60E-12 |
| 6 | GO:0005840: ribosome | 3.77E-06 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 4.90E-05 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 7.58E-05 |
| 9 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.13E-04 |
| 10 | GO:0009547: plastid ribosome | 2.13E-04 |
| 11 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.13E-04 |
| 12 | GO:0009536: plastid | 2.22E-04 |
| 13 | GO:0080085: signal recognition particle, chloroplast targeting | 4.76E-04 |
| 14 | GO:0000311: plastid large ribosomal subunit | 5.07E-04 |
| 15 | GO:0000312: plastid small ribosomal subunit | 6.47E-04 |
| 16 | GO:0009509: chromoplast | 7.74E-04 |
| 17 | GO:0005782: peroxisomal matrix | 7.74E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 7.74E-04 |
| 19 | GO:0031977: thylakoid lumen | 7.90E-04 |
| 20 | GO:0043231: intracellular membrane-bounded organelle | 8.65E-04 |
| 21 | GO:0046658: anchored component of plasma membrane | 1.05E-03 |
| 22 | GO:0031969: chloroplast membrane | 1.85E-03 |
| 23 | GO:0009579: thylakoid | 2.72E-03 |
| 24 | GO:0009533: chloroplast stromal thylakoid | 3.26E-03 |
| 25 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.33E-03 |
| 26 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.90E-03 |
| 27 | GO:0030659: cytoplasmic vesicle membrane | 8.84E-03 |
| 28 | GO:0030095: chloroplast photosystem II | 8.84E-03 |
| 29 | GO:0009534: chloroplast thylakoid | 1.06E-02 |
| 30 | GO:0009654: photosystem II oxygen evolving complex | 1.19E-02 |
| 31 | GO:0031225: anchored component of membrane | 1.56E-02 |
| 32 | GO:0019898: extrinsic component of membrane | 2.00E-02 |
| 33 | GO:0005778: peroxisomal membrane | 2.52E-02 |
| 34 | GO:0022627: cytosolic small ribosomal subunit | 2.88E-02 |
| 35 | GO:0009505: plant-type cell wall | 3.21E-02 |
| 36 | GO:0005777: peroxisome | 3.62E-02 |
| 37 | GO:0015934: large ribosomal subunit | 3.66E-02 |
| 38 | GO:0016020: membrane | 4.01E-02 |