GO Enrichment Analysis of Co-expressed Genes with
AT3G18040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 9.05E-14 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 1.59E-09 |
| 7 | GO:0018298: protein-chromophore linkage | 1.12E-06 |
| 8 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.24E-06 |
| 9 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.77E-06 |
| 10 | GO:0010206: photosystem II repair | 5.40E-06 |
| 11 | GO:0006000: fructose metabolic process | 6.53E-06 |
| 12 | GO:0006094: gluconeogenesis | 2.00E-05 |
| 13 | GO:0010207: photosystem II assembly | 2.45E-05 |
| 14 | GO:0006546: glycine catabolic process | 2.77E-05 |
| 15 | GO:0045727: positive regulation of translation | 2.77E-05 |
| 16 | GO:0015994: chlorophyll metabolic process | 2.77E-05 |
| 17 | GO:0009409: response to cold | 3.91E-05 |
| 18 | GO:0009735: response to cytokinin | 4.91E-05 |
| 19 | GO:0042549: photosystem II stabilization | 6.61E-05 |
| 20 | GO:0010114: response to red light | 7.37E-05 |
| 21 | GO:0010196: nonphotochemical quenching | 1.22E-04 |
| 22 | GO:0000476: maturation of 4.5S rRNA | 1.93E-04 |
| 23 | GO:0000967: rRNA 5'-end processing | 1.93E-04 |
| 24 | GO:0071370: cellular response to gibberellin stimulus | 1.93E-04 |
| 25 | GO:0000481: maturation of 5S rRNA | 1.93E-04 |
| 26 | GO:0010028: xanthophyll cycle | 1.93E-04 |
| 27 | GO:0034337: RNA folding | 1.93E-04 |
| 28 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.93E-04 |
| 29 | GO:0009657: plastid organization | 1.95E-04 |
| 30 | GO:0032544: plastid translation | 1.95E-04 |
| 31 | GO:0006002: fructose 6-phosphate metabolic process | 1.95E-04 |
| 32 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.85E-04 |
| 33 | GO:0034755: iron ion transmembrane transport | 4.33E-04 |
| 34 | GO:1900871: chloroplast mRNA modification | 4.33E-04 |
| 35 | GO:0016122: xanthophyll metabolic process | 4.33E-04 |
| 36 | GO:0034470: ncRNA processing | 4.33E-04 |
| 37 | GO:0010218: response to far red light | 4.45E-04 |
| 38 | GO:0005986: sucrose biosynthetic process | 5.01E-04 |
| 39 | GO:0019253: reductive pentose-phosphate cycle | 5.65E-04 |
| 40 | GO:0005985: sucrose metabolic process | 6.32E-04 |
| 41 | GO:0006013: mannose metabolic process | 7.06E-04 |
| 42 | GO:0006518: peptide metabolic process | 7.06E-04 |
| 43 | GO:0045493: xylan catabolic process | 7.06E-04 |
| 44 | GO:0006810: transport | 9.06E-04 |
| 45 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.01E-03 |
| 46 | GO:0051513: regulation of monopolar cell growth | 1.01E-03 |
| 47 | GO:2000122: negative regulation of stomatal complex development | 1.34E-03 |
| 48 | GO:0010037: response to carbon dioxide | 1.34E-03 |
| 49 | GO:0015976: carbon utilization | 1.34E-03 |
| 50 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.34E-03 |
| 51 | GO:0006461: protein complex assembly | 1.70E-03 |
| 52 | GO:1902456: regulation of stomatal opening | 2.10E-03 |
| 53 | GO:0032259: methylation | 2.52E-03 |
| 54 | GO:0009645: response to low light intensity stimulus | 2.96E-03 |
| 55 | GO:0009772: photosynthetic electron transport in photosystem II | 2.96E-03 |
| 56 | GO:0008152: metabolic process | 3.12E-03 |
| 57 | GO:0015995: chlorophyll biosynthetic process | 3.14E-03 |
| 58 | GO:0007623: circadian rhythm | 3.29E-03 |
| 59 | GO:0032508: DNA duplex unwinding | 3.43E-03 |
| 60 | GO:0010492: maintenance of shoot apical meristem identity | 3.43E-03 |
| 61 | GO:0009637: response to blue light | 4.40E-03 |
| 62 | GO:0048507: meristem development | 4.44E-03 |
| 63 | GO:0009821: alkaloid biosynthetic process | 4.44E-03 |
| 64 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 4.44E-03 |
| 65 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.44E-03 |
| 66 | GO:0010205: photoinhibition | 4.99E-03 |
| 67 | GO:0009638: phototropism | 4.99E-03 |
| 68 | GO:0042742: defense response to bacterium | 5.32E-03 |
| 69 | GO:0006949: syncytium formation | 5.55E-03 |
| 70 | GO:0009658: chloroplast organization | 5.73E-03 |
| 71 | GO:0009644: response to high light intensity | 6.12E-03 |
| 72 | GO:0019684: photosynthesis, light reaction | 6.13E-03 |
| 73 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.13E-03 |
| 74 | GO:0006879: cellular iron ion homeostasis | 6.13E-03 |
| 75 | GO:0000272: polysaccharide catabolic process | 6.13E-03 |
| 76 | GO:0009750: response to fructose | 6.13E-03 |
| 77 | GO:0009698: phenylpropanoid metabolic process | 6.13E-03 |
| 78 | GO:0005983: starch catabolic process | 6.73E-03 |
| 79 | GO:0006006: glucose metabolic process | 7.36E-03 |
| 80 | GO:0009767: photosynthetic electron transport chain | 7.36E-03 |
| 81 | GO:0006364: rRNA processing | 7.63E-03 |
| 82 | GO:0006096: glycolytic process | 9.03E-03 |
| 83 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.35E-03 |
| 84 | GO:0016575: histone deacetylation | 1.08E-02 |
| 85 | GO:0061077: chaperone-mediated protein folding | 1.15E-02 |
| 86 | GO:0019748: secondary metabolic process | 1.23E-02 |
| 87 | GO:0010017: red or far-red light signaling pathway | 1.23E-02 |
| 88 | GO:0006508: proteolysis | 1.31E-02 |
| 89 | GO:0006012: galactose metabolic process | 1.31E-02 |
| 90 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.31E-02 |
| 91 | GO:0080022: primary root development | 1.55E-02 |
| 92 | GO:0000413: protein peptidyl-prolyl isomerization | 1.55E-02 |
| 93 | GO:0042631: cellular response to water deprivation | 1.55E-02 |
| 94 | GO:0009958: positive gravitropism | 1.63E-02 |
| 95 | GO:0002229: defense response to oomycetes | 1.90E-02 |
| 96 | GO:0010193: response to ozone | 1.90E-02 |
| 97 | GO:0000302: response to reactive oxygen species | 1.90E-02 |
| 98 | GO:0030163: protein catabolic process | 2.08E-02 |
| 99 | GO:0009828: plant-type cell wall loosening | 2.18E-02 |
| 100 | GO:0009611: response to wounding | 2.62E-02 |
| 101 | GO:0042128: nitrate assimilation | 2.67E-02 |
| 102 | GO:0010411: xyloglucan metabolic process | 2.77E-02 |
| 103 | GO:0016311: dephosphorylation | 2.88E-02 |
| 104 | GO:0009817: defense response to fungus, incompatible interaction | 2.98E-02 |
| 105 | GO:0010119: regulation of stomatal movement | 3.31E-02 |
| 106 | GO:0046686: response to cadmium ion | 3.58E-02 |
| 107 | GO:0034599: cellular response to oxidative stress | 3.64E-02 |
| 108 | GO:0055114: oxidation-reduction process | 3.72E-02 |
| 109 | GO:0006631: fatty acid metabolic process | 3.99E-02 |
| 110 | GO:0045454: cell redox homeostasis | 4.32E-02 |
| 111 | GO:0006855: drug transmembrane transport | 4.71E-02 |
| 112 | GO:0009664: plant-type cell wall organization | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 4 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 5 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 6 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 7 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 8 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 9 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 10 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 11 | GO:0005528: FK506 binding | 1.56E-10 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.69E-09 |
| 13 | GO:0016168: chlorophyll binding | 6.29E-07 |
| 14 | GO:0031409: pigment binding | 7.69E-07 |
| 15 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.77E-06 |
| 16 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 1.77E-06 |
| 17 | GO:0045485: omega-6 fatty acid desaturase activity | 1.93E-04 |
| 18 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.93E-04 |
| 19 | GO:0019843: rRNA binding | 3.37E-04 |
| 20 | GO:0008967: phosphoglycolate phosphatase activity | 4.33E-04 |
| 21 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.33E-04 |
| 22 | GO:0047746: chlorophyllase activity | 4.33E-04 |
| 23 | GO:0016868: intramolecular transferase activity, phosphotransferases | 4.33E-04 |
| 24 | GO:0004618: phosphoglycerate kinase activity | 4.33E-04 |
| 25 | GO:0010297: heteropolysaccharide binding | 4.33E-04 |
| 26 | GO:0004047: aminomethyltransferase activity | 4.33E-04 |
| 27 | GO:0008266: poly(U) RNA binding | 5.65E-04 |
| 28 | GO:0016787: hydrolase activity | 6.35E-04 |
| 29 | GO:0016851: magnesium chelatase activity | 1.01E-03 |
| 30 | GO:0048487: beta-tubulin binding | 1.01E-03 |
| 31 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.01E-03 |
| 32 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.34E-03 |
| 33 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.34E-03 |
| 34 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.34E-03 |
| 35 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.34E-03 |
| 36 | GO:0050662: coenzyme binding | 1.62E-03 |
| 37 | GO:0004332: fructose-bisphosphate aldolase activity | 2.10E-03 |
| 38 | GO:0004130: cytochrome-c peroxidase activity | 2.10E-03 |
| 39 | GO:0004252: serine-type endopeptidase activity | 2.50E-03 |
| 40 | GO:0004602: glutathione peroxidase activity | 2.52E-03 |
| 41 | GO:0004559: alpha-mannosidase activity | 2.52E-03 |
| 42 | GO:0051920: peroxiredoxin activity | 2.52E-03 |
| 43 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.52E-03 |
| 44 | GO:0008236: serine-type peptidase activity | 3.30E-03 |
| 45 | GO:0004033: aldo-keto reductase (NADP) activity | 3.43E-03 |
| 46 | GO:0004564: beta-fructofuranosidase activity | 3.43E-03 |
| 47 | GO:0016209: antioxidant activity | 3.43E-03 |
| 48 | GO:0004034: aldose 1-epimerase activity | 3.43E-03 |
| 49 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.93E-03 |
| 50 | GO:0016844: strictosidine synthase activity | 4.99E-03 |
| 51 | GO:0004575: sucrose alpha-glucosidase activity | 4.99E-03 |
| 52 | GO:0005381: iron ion transmembrane transporter activity | 4.99E-03 |
| 53 | GO:0008168: methyltransferase activity | 5.46E-03 |
| 54 | GO:0004185: serine-type carboxypeptidase activity | 5.66E-03 |
| 55 | GO:0051537: 2 iron, 2 sulfur cluster binding | 6.12E-03 |
| 56 | GO:0043621: protein self-association | 6.12E-03 |
| 57 | GO:0004089: carbonate dehydratase activity | 7.36E-03 |
| 58 | GO:0031072: heat shock protein binding | 7.36E-03 |
| 59 | GO:0004407: histone deacetylase activity | 1.01E-02 |
| 60 | GO:0004176: ATP-dependent peptidase activity | 1.15E-02 |
| 61 | GO:0022891: substrate-specific transmembrane transporter activity | 1.31E-02 |
| 62 | GO:0003756: protein disulfide isomerase activity | 1.39E-02 |
| 63 | GO:0003727: single-stranded RNA binding | 1.39E-02 |
| 64 | GO:0016853: isomerase activity | 1.72E-02 |
| 65 | GO:0003735: structural constituent of ribosome | 1.75E-02 |
| 66 | GO:0048038: quinone binding | 1.90E-02 |
| 67 | GO:0004518: nuclease activity | 1.99E-02 |
| 68 | GO:0003743: translation initiation factor activity | 2.21E-02 |
| 69 | GO:0008483: transaminase activity | 2.27E-02 |
| 70 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.88E-02 |
| 71 | GO:0004601: peroxidase activity | 2.92E-02 |
| 72 | GO:0015238: drug transmembrane transporter activity | 3.09E-02 |
| 73 | GO:0004222: metalloendopeptidase activity | 3.20E-02 |
| 74 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.31E-02 |
| 75 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.64E-02 |
| 76 | GO:0030246: carbohydrate binding | 3.69E-02 |
| 77 | GO:0050661: NADP binding | 3.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.43E-46 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 8.70E-36 |
| 5 | GO:0009534: chloroplast thylakoid | 2.19E-32 |
| 6 | GO:0009941: chloroplast envelope | 4.70E-24 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 5.40E-24 |
| 8 | GO:0009570: chloroplast stroma | 3.53E-23 |
| 9 | GO:0009579: thylakoid | 7.57E-19 |
| 10 | GO:0030095: chloroplast photosystem II | 4.70E-11 |
| 11 | GO:0031977: thylakoid lumen | 7.45E-11 |
| 12 | GO:0010287: plastoglobule | 3.38E-09 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.33E-08 |
| 14 | GO:0009523: photosystem II | 1.59E-07 |
| 15 | GO:0010319: stromule | 3.91E-07 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 4.93E-05 |
| 17 | GO:0048046: apoplast | 6.01E-05 |
| 18 | GO:0009533: chloroplast stromal thylakoid | 1.22E-04 |
| 19 | GO:0009522: photosystem I | 1.35E-04 |
| 20 | GO:0019898: extrinsic component of membrane | 1.50E-04 |
| 21 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.93E-04 |
| 22 | GO:0009547: plastid ribosome | 1.93E-04 |
| 23 | GO:0009782: photosystem I antenna complex | 1.93E-04 |
| 24 | GO:0009783: photosystem II antenna complex | 1.93E-04 |
| 25 | GO:0031969: chloroplast membrane | 2.77E-04 |
| 26 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 4.33E-04 |
| 27 | GO:0030076: light-harvesting complex | 6.32E-04 |
| 28 | GO:0010007: magnesium chelatase complex | 7.06E-04 |
| 29 | GO:0016020: membrane | 8.15E-04 |
| 30 | GO:0042651: thylakoid membrane | 8.55E-04 |
| 31 | GO:0005960: glycine cleavage complex | 1.01E-03 |
| 32 | GO:0005775: vacuolar lumen | 1.01E-03 |
| 33 | GO:0009706: chloroplast inner membrane | 1.65E-03 |
| 34 | GO:0009538: photosystem I reaction center | 3.43E-03 |
| 35 | GO:0042644: chloroplast nucleoid | 4.44E-03 |
| 36 | GO:0005763: mitochondrial small ribosomal subunit | 4.44E-03 |
| 37 | GO:0005840: ribosome | 5.78E-03 |
| 38 | GO:0000311: plastid large ribosomal subunit | 6.73E-03 |
| 39 | GO:0032040: small-subunit processome | 6.73E-03 |
| 40 | GO:0009508: plastid chromosome | 7.36E-03 |
| 41 | GO:0000312: plastid small ribosomal subunit | 8.01E-03 |
| 42 | GO:0009295: nucleoid | 2.27E-02 |
| 43 | GO:0000325: plant-type vacuole | 3.31E-02 |
| 44 | GO:0015934: large ribosomal subunit | 3.31E-02 |
| 45 | GO:0031902: late endosome membrane | 3.99E-02 |