Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0015742: alpha-ketoglutarate transport0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:2000121: regulation of removal of superoxide radicals0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0042407: cristae formation0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
12GO:0015882: L-ascorbic acid transport0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
15GO:0070125: mitochondrial translational elongation0.00E+00
16GO:0015995: chlorophyll biosynthetic process7.24E-15
17GO:0009658: chloroplast organization4.38E-13
18GO:0006412: translation3.36E-12
19GO:0009735: response to cytokinin5.36E-11
20GO:0042254: ribosome biogenesis1.72E-10
21GO:0032544: plastid translation3.59E-09
22GO:0015979: photosynthesis1.95E-07
23GO:0010027: thylakoid membrane organization3.57E-07
24GO:0006782: protoporphyrinogen IX biosynthetic process1.32E-06
25GO:1901259: chloroplast rRNA processing6.76E-06
26GO:0042255: ribosome assembly1.61E-05
27GO:0006353: DNA-templated transcription, termination1.61E-05
28GO:0090391: granum assembly2.48E-05
29GO:0006783: heme biosynthetic process3.15E-05
30GO:0051085: chaperone mediated protein folding requiring cofactor5.41E-05
31GO:0032502: developmental process7.14E-05
32GO:0016123: xanthophyll biosynthetic process1.48E-04
33GO:0016120: carotene biosynthetic process1.48E-04
34GO:0009772: photosynthetic electron transport in photosystem II3.69E-04
35GO:0006434: seryl-tRNA aminoacylation3.99E-04
36GO:0009443: pyridoxal 5'-phosphate salvage3.99E-04
37GO:0043489: RNA stabilization3.99E-04
38GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process3.99E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process3.99E-04
40GO:1904964: positive regulation of phytol biosynthetic process3.99E-04
41GO:0042371: vitamin K biosynthetic process3.99E-04
42GO:0006436: tryptophanyl-tRNA aminoacylation3.99E-04
43GO:1902458: positive regulation of stomatal opening3.99E-04
44GO:0010028: xanthophyll cycle3.99E-04
45GO:0034337: RNA folding3.99E-04
46GO:0048564: photosystem I assembly4.62E-04
47GO:0006633: fatty acid biosynthetic process4.98E-04
48GO:0006779: porphyrin-containing compound biosynthetic process7.98E-04
49GO:0031425: chloroplast RNA processing7.98E-04
50GO:0043039: tRNA aminoacylation8.66E-04
51GO:1902326: positive regulation of chlorophyll biosynthetic process8.66E-04
52GO:0018026: peptidyl-lysine monomethylation8.66E-04
53GO:0006423: cysteinyl-tRNA aminoacylation8.66E-04
54GO:2000071: regulation of defense response by callose deposition8.66E-04
55GO:0080183: response to photooxidative stress8.66E-04
56GO:0008616: queuosine biosynthetic process8.66E-04
57GO:0006729: tetrahydrobiopterin biosynthetic process8.66E-04
58GO:1903426: regulation of reactive oxygen species biosynthetic process8.66E-04
59GO:0006568: tryptophan metabolic process8.66E-04
60GO:0009773: photosynthetic electron transport in photosystem I1.07E-03
61GO:0009627: systemic acquired resistance1.22E-03
62GO:0045037: protein import into chloroplast stroma1.22E-03
63GO:0006518: peptide metabolic process1.40E-03
64GO:0051604: protein maturation1.40E-03
65GO:0006760: folic acid-containing compound metabolic process1.40E-03
66GO:0010207: photosystem II assembly1.56E-03
67GO:0010020: chloroplast fission1.56E-03
68GO:0015729: oxaloacetate transport2.03E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch2.03E-03
70GO:0006241: CTP biosynthetic process2.03E-03
71GO:0006165: nucleoside diphosphate phosphorylation2.03E-03
72GO:0006228: UTP biosynthetic process2.03E-03
73GO:0006986: response to unfolded protein2.03E-03
74GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.03E-03
75GO:2001141: regulation of RNA biosynthetic process2.03E-03
76GO:0019344: cysteine biosynthetic process2.16E-03
77GO:0009790: embryo development2.16E-03
78GO:0045454: cell redox homeostasis2.55E-03
79GO:0015743: malate transport2.73E-03
80GO:0009765: photosynthesis, light harvesting2.73E-03
81GO:0006183: GTP biosynthetic process2.73E-03
82GO:0006221: pyrimidine nucleotide biosynthetic process2.73E-03
83GO:0046656: folic acid biosynthetic process2.73E-03
84GO:0030007: cellular potassium ion homeostasis2.73E-03
85GO:0044205: 'de novo' UMP biosynthetic process2.73E-03
86GO:0044206: UMP salvage2.73E-03
87GO:0019676: ammonia assimilation cycle2.73E-03
88GO:0007005: mitochondrion organization2.87E-03
89GO:0009306: protein secretion3.40E-03
90GO:0034052: positive regulation of plant-type hypersensitive response3.49E-03
91GO:0032543: mitochondrial translation3.49E-03
92GO:0071423: malate transmembrane transport3.49E-03
93GO:0010236: plastoquinone biosynthetic process3.49E-03
94GO:0045038: protein import into chloroplast thylakoid membrane3.49E-03
95GO:0043097: pyrimidine nucleoside salvage3.49E-03
96GO:0031365: N-terminal protein amino acid modification3.49E-03
97GO:0016117: carotenoid biosynthetic process3.69E-03
98GO:0008033: tRNA processing3.99E-03
99GO:0042742: defense response to bacterium4.09E-03
100GO:0006655: phosphatidylglycerol biosynthetic process4.32E-03
101GO:0042793: transcription from plastid promoter4.32E-03
102GO:0010190: cytochrome b6f complex assembly4.32E-03
103GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.32E-03
104GO:0006206: pyrimidine nucleobase metabolic process4.32E-03
105GO:0009117: nucleotide metabolic process4.32E-03
106GO:0032973: amino acid export4.32E-03
107GO:0006457: protein folding5.01E-03
108GO:0009955: adaxial/abaxial pattern specification5.20E-03
109GO:0042372: phylloquinone biosynthetic process5.20E-03
110GO:0042026: protein refolding5.20E-03
111GO:0017148: negative regulation of translation5.20E-03
112GO:0046654: tetrahydrofolate biosynthetic process5.20E-03
113GO:0010019: chloroplast-nucleus signaling pathway5.20E-03
114GO:0010555: response to mannitol5.20E-03
115GO:0043090: amino acid import6.15E-03
116GO:0010196: nonphotochemical quenching6.15E-03
117GO:0006400: tRNA modification6.15E-03
118GO:0006826: iron ion transport6.15E-03
119GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.15E-03
120GO:0006401: RNA catabolic process6.15E-03
121GO:0006402: mRNA catabolic process7.15E-03
122GO:0009787: regulation of abscisic acid-activated signaling pathway7.15E-03
123GO:0009642: response to light intensity7.15E-03
124GO:0043068: positive regulation of programmed cell death7.15E-03
125GO:0006605: protein targeting7.15E-03
126GO:2000070: regulation of response to water deprivation7.15E-03
127GO:0006875: cellular metal ion homeostasis7.15E-03
128GO:0052543: callose deposition in cell wall7.15E-03
129GO:0009409: response to cold7.88E-03
130GO:0071482: cellular response to light stimulus8.21E-03
131GO:0009657: plastid organization8.21E-03
132GO:0017004: cytochrome complex assembly8.21E-03
133GO:0098656: anion transmembrane transport9.31E-03
134GO:0009245: lipid A biosynthetic process9.31E-03
135GO:0080144: amino acid homeostasis9.31E-03
136GO:0034765: regulation of ion transmembrane transport9.31E-03
137GO:0009793: embryo development ending in seed dormancy9.82E-03
138GO:0048481: plant ovule development1.01E-02
139GO:0043067: regulation of programmed cell death1.05E-02
140GO:1900865: chloroplast RNA modification1.05E-02
141GO:0006535: cysteine biosynthetic process from serine1.17E-02
142GO:0019538: protein metabolic process1.17E-02
143GO:0045036: protein targeting to chloroplast1.17E-02
144GO:0019684: photosynthesis, light reaction1.29E-02
145GO:0009073: aromatic amino acid family biosynthetic process1.29E-02
146GO:0043085: positive regulation of catalytic activity1.29E-02
147GO:0009682: induced systemic resistance1.29E-02
148GO:0006352: DNA-templated transcription, initiation1.29E-02
149GO:0006415: translational termination1.29E-02
150GO:0016024: CDP-diacylglycerol biosynthetic process1.43E-02
151GO:0009767: photosynthetic electron transport chain1.56E-02
152GO:0010628: positive regulation of gene expression1.56E-02
153GO:0006006: glucose metabolic process1.56E-02
154GO:0008380: RNA splicing1.60E-02
155GO:0019253: reductive pentose-phosphate cycle1.70E-02
156GO:0010167: response to nitrate1.84E-02
157GO:0010039: response to iron ion1.84E-02
158GO:0009116: nucleoside metabolic process2.14E-02
159GO:0000027: ribosomal large subunit assembly2.14E-02
160GO:0006418: tRNA aminoacylation for protein translation2.30E-02
161GO:0007017: microtubule-based process2.30E-02
162GO:0061077: chaperone-mediated protein folding2.46E-02
163GO:0051260: protein homooligomerization2.46E-02
164GO:0009814: defense response, incompatible interaction2.63E-02
165GO:2000022: regulation of jasmonic acid mediated signaling pathway2.63E-02
166GO:0006096: glycolytic process2.64E-02
167GO:0009411: response to UV2.79E-02
168GO:0042335: cuticle development3.32E-02
169GO:0000413: protein peptidyl-prolyl isomerization3.32E-02
170GO:0010118: stomatal movement3.32E-02
171GO:0006662: glycerol ether metabolic process3.50E-02
172GO:0010197: polar nucleus fusion3.50E-02
173GO:0009741: response to brassinosteroid3.50E-02
174GO:0015986: ATP synthesis coupled proton transport3.69E-02
175GO:0006814: sodium ion transport3.69E-02
176GO:0010183: pollen tube guidance3.87E-02
177GO:0002229: defense response to oomycetes4.07E-02
178GO:1901657: glycosyl compound metabolic process4.46E-02
179GO:0009567: double fertilization forming a zygote and endosperm4.66E-02
180GO:0010286: heat acclimation4.86E-02
181GO:0071805: potassium ion transmembrane transport4.86E-02
182GO:0006397: mRNA processing4.95E-02
RankGO TermAdjusted P value
1GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
2GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
7GO:0015269: calcium-activated potassium channel activity0.00E+00
8GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
13GO:0004418: hydroxymethylbilane synthase activity0.00E+00
14GO:0015229: L-ascorbic acid transporter activity0.00E+00
15GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
16GO:0004151: dihydroorotase activity0.00E+00
17GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
18GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
19GO:0046408: chlorophyll synthetase activity0.00E+00
20GO:0015139: alpha-ketoglutarate transmembrane transporter activity0.00E+00
21GO:0019843: rRNA binding4.82E-20
22GO:0003735: structural constituent of ribosome7.69E-15
23GO:0016851: magnesium chelatase activity3.17E-07
24GO:0003723: RNA binding1.23E-04
25GO:0051920: peroxiredoxin activity2.85E-04
26GO:0003727: single-stranded RNA binding3.75E-04
27GO:0030794: (S)-coclaurine-N-methyltransferase activity3.99E-04
28GO:0004425: indole-3-glycerol-phosphate synthase activity3.99E-04
29GO:0000824: inositol tetrakisphosphate 3-kinase activity3.99E-04
30GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.99E-04
31GO:0047326: inositol tetrakisphosphate 5-kinase activity3.99E-04
32GO:0004828: serine-tRNA ligase activity3.99E-04
33GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity3.99E-04
34GO:0009374: biotin binding3.99E-04
35GO:0015088: copper uptake transmembrane transporter activity3.99E-04
36GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.99E-04
37GO:0004830: tryptophan-tRNA ligase activity3.99E-04
38GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity3.99E-04
39GO:0004654: polyribonucleotide nucleotidyltransferase activity3.99E-04
40GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.99E-04
41GO:0016209: antioxidant activity4.62E-04
42GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.69E-04
43GO:0102083: 7,8-dihydromonapterin aldolase activity8.66E-04
44GO:0004312: fatty acid synthase activity8.66E-04
45GO:0004817: cysteine-tRNA ligase activity8.66E-04
46GO:0008479: queuine tRNA-ribosyltransferase activity8.66E-04
47GO:0016630: protochlorophyllide reductase activity8.66E-04
48GO:0000774: adenyl-nucleotide exchange factor activity8.66E-04
49GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.66E-04
50GO:0004150: dihydroneopterin aldolase activity8.66E-04
51GO:0015367: oxoglutarate:malate antiporter activity8.66E-04
52GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.66E-04
53GO:0009977: proton motive force dependent protein transmembrane transporter activity8.66E-04
54GO:0051082: unfolded protein binding1.21E-03
55GO:0003729: mRNA binding1.22E-03
56GO:0004148: dihydrolipoyl dehydrogenase activity1.40E-03
57GO:0004751: ribose-5-phosphate isomerase activity1.40E-03
58GO:0070402: NADPH binding1.40E-03
59GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.40E-03
60GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.40E-03
61GO:0001872: (1->3)-beta-D-glucan binding2.03E-03
62GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.03E-03
63GO:0015131: oxaloacetate transmembrane transporter activity2.03E-03
64GO:0035529: NADH pyrophosphatase activity2.03E-03
65GO:0016149: translation release factor activity, codon specific2.03E-03
66GO:0004550: nucleoside diphosphate kinase activity2.03E-03
67GO:0043023: ribosomal large subunit binding2.03E-03
68GO:0008097: 5S rRNA binding2.03E-03
69GO:0005528: FK506 binding2.16E-03
70GO:0051087: chaperone binding2.38E-03
71GO:0016987: sigma factor activity2.73E-03
72GO:0043495: protein anchor2.73E-03
73GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.73E-03
74GO:0004659: prenyltransferase activity2.73E-03
75GO:0016279: protein-lysine N-methyltransferase activity2.73E-03
76GO:0001053: plastid sigma factor activity2.73E-03
77GO:0004845: uracil phosphoribosyltransferase activity2.73E-03
78GO:0003959: NADPH dehydrogenase activity3.49E-03
79GO:0030414: peptidase inhibitor activity3.49E-03
80GO:0004040: amidase activity3.49E-03
81GO:0003989: acetyl-CoA carboxylase activity3.49E-03
82GO:0003690: double-stranded DNA binding4.23E-03
83GO:0015271: outward rectifier potassium channel activity4.32E-03
84GO:0031177: phosphopantetheine binding4.32E-03
85GO:0016462: pyrophosphatase activity4.32E-03
86GO:0004124: cysteine synthase activity5.20E-03
87GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.20E-03
88GO:0004849: uridine kinase activity5.20E-03
89GO:0000035: acyl binding5.20E-03
90GO:0008235: metalloexopeptidase activity6.15E-03
91GO:0019899: enzyme binding6.15E-03
92GO:0015140: malate transmembrane transporter activity6.15E-03
93GO:0008237: metallopeptidase activity6.84E-03
94GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process7.15E-03
95GO:0004033: aldo-keto reductase (NADP) activity7.15E-03
96GO:0005267: potassium channel activity8.21E-03
97GO:0003747: translation release factor activity9.31E-03
98GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.01E-02
99GO:0005509: calcium ion binding1.03E-02
100GO:0005381: iron ion transmembrane transporter activity1.05E-02
101GO:0004222: metalloendopeptidase activity1.11E-02
102GO:0008047: enzyme activator activity1.17E-02
103GO:0003746: translation elongation factor activity1.28E-02
104GO:0004177: aminopeptidase activity1.29E-02
105GO:0044183: protein binding involved in protein folding1.29E-02
106GO:0051539: 4 iron, 4 sulfur cluster binding1.46E-02
107GO:0000175: 3'-5'-exoribonuclease activity1.56E-02
108GO:0005315: inorganic phosphate transmembrane transporter activity1.56E-02
109GO:0031072: heat shock protein binding1.56E-02
110GO:0008266: poly(U) RNA binding1.70E-02
111GO:0042802: identical protein binding1.73E-02
112GO:0016491: oxidoreductase activity2.03E-02
113GO:0004601: peroxidase activity2.22E-02
114GO:0043424: protein histidine kinase binding2.30E-02
115GO:0005216: ion channel activity2.30E-02
116GO:0004176: ATP-dependent peptidase activity2.46E-02
117GO:0016887: ATPase activity2.62E-02
118GO:0022891: substrate-specific transmembrane transporter activity2.79E-02
119GO:0008514: organic anion transmembrane transporter activity2.96E-02
120GO:0047134: protein-disulfide reductase activity3.14E-02
121GO:0004812: aminoacyl-tRNA ligase activity3.14E-02
122GO:0015035: protein disulfide oxidoreductase activity3.27E-02
123GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity3.50E-02
124GO:0008080: N-acetyltransferase activity3.50E-02
125GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.50E-02
126GO:0004791: thioredoxin-disulfide reductase activity3.69E-02
127GO:0010181: FMN binding3.69E-02
128GO:0042803: protein homodimerization activity3.85E-02
129GO:0016740: transferase activity4.26E-02
130GO:0030170: pyridoxal phosphate binding4.40E-02
131GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.46E-02
132GO:0008483: transaminase activity4.86E-02
133GO:0016722: oxidoreductase activity, oxidizing metal ions4.86E-02
134GO:0005200: structural constituent of cytoskeleton4.86E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009507: chloroplast2.99E-106
3GO:0009570: chloroplast stroma1.09E-73
4GO:0009941: chloroplast envelope3.32E-60
5GO:0009535: chloroplast thylakoid membrane4.18E-36
6GO:0009579: thylakoid6.84E-36
7GO:0009543: chloroplast thylakoid lumen1.82E-18
8GO:0005840: ribosome7.24E-18
9GO:0009534: chloroplast thylakoid6.53E-17
10GO:0031977: thylakoid lumen1.60E-13
11GO:0009654: photosystem II oxygen evolving complex1.07E-10
12GO:0009536: plastid5.74E-09
13GO:0019898: extrinsic component of membrane8.42E-08
14GO:0010007: magnesium chelatase complex2.48E-05
15GO:0009706: chloroplast inner membrane2.50E-05
16GO:0031969: chloroplast membrane8.44E-05
17GO:0000311: plastid large ribosomal subunit8.48E-05
18GO:0009508: plastid chromosome1.03E-04
19GO:0030095: chloroplast photosystem II1.24E-04
20GO:0042651: thylakoid membrane2.31E-04
21GO:0015935: small ribosomal subunit2.63E-04
22GO:0048046: apoplast3.06E-04
23GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.99E-04
24GO:0009515: granal stacked thylakoid3.99E-04
25GO:0009344: nitrite reductase complex [NAD(P)H]3.99E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex8.66E-04
27GO:0010319: stromule9.17E-04
28GO:0009295: nucleoid9.17E-04
29GO:0033281: TAT protein transport complex1.40E-03
30GO:0009509: chromoplast1.40E-03
31GO:0009317: acetyl-CoA carboxylase complex1.40E-03
32GO:0015934: large ribosomal subunit1.78E-03
33GO:0009532: plastid stroma2.62E-03
34GO:0009526: plastid envelope2.73E-03
35GO:0031897: Tic complex2.73E-03
36GO:0022626: cytosolic ribosome2.76E-03
37GO:0055035: plastid thylakoid membrane3.49E-03
38GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.32E-03
39GO:0009533: chloroplast stromal thylakoid6.15E-03
40GO:0030529: intracellular ribonucleoprotein complex7.69E-03
41GO:0009539: photosystem II reaction center8.21E-03
42GO:0045298: tubulin complex9.31E-03
43GO:0005763: mitochondrial small ribosomal subunit9.31E-03
44GO:0009707: chloroplast outer membrane1.01E-02
45GO:0005759: mitochondrial matrix1.13E-02
46GO:0016020: membrane1.35E-02
47GO:0032040: small-subunit processome1.43E-02
48GO:0022625: cytosolic large ribosomal subunit3.10E-02
49GO:0010287: plastoglobule3.76E-02
50GO:0009523: photosystem II3.87E-02
51GO:0005623: cell4.08E-02
52GO:0016592: mediator complex4.26E-02
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Gene type



Gene DE type