co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016236: macroautophagy	0.00E+00
2	GO:0009991: response to extracellular stimulus	0.00E+00
3	GO:0010111: glyoxysome organization	0.00E+00
4	GO:0048024: regulation of mRNA splicing, via spliceosome	0.00E+00
5	GO:0036258: multivesicular body assembly	0.00E+00
6	GO:0031338: regulation of vesicle fusion	1.10E-04
7	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.10E-04
8	GO:0046167: glycerol-3-phosphate biosynthetic process	1.10E-04
9	GO:0048482: plant ovule morphogenesis	1.10E-04
10	GO:0030242: pexophagy	1.10E-04
11	GO:0000303: response to superoxide	1.10E-04
12	GO:1902265: abscisic acid homeostasis	1.10E-04
13	GO:0046467: membrane lipid biosynthetic process	1.10E-04
14	GO:0006376: mRNA splice site selection	1.10E-04
15	GO:0019395: fatty acid oxidation	2.57E-04
16	GO:0006641: triglyceride metabolic process	2.57E-04
17	GO:0090630: activation of GTPase activity	4.25E-04
18	GO:0046621: negative regulation of organ growth	4.25E-04
19	GO:0006556: S-adenosylmethionine biosynthetic process	4.25E-04
20	GO:0019563: glycerol catabolic process	4.25E-04
21	GO:0031408: oxylipin biosynthetic process	4.43E-04
22	GO:0009306: protein secretion	5.72E-04
23	GO:0070676: intralumenal vesicle formation	6.10E-04
24	GO:0001676: long-chain fatty acid metabolic process	6.10E-04
25	GO:2000114: regulation of establishment of cell polarity	6.10E-04
26	GO:0051259: protein oligomerization	6.10E-04
27	GO:1901000: regulation of response to salt stress	6.10E-04
28	GO:0006072: glycerol-3-phosphate metabolic process	6.10E-04
29	GO:0006809: nitric oxide biosynthetic process	6.10E-04
30	GO:0072583: clathrin-dependent endocytosis	6.10E-04
31	GO:0010188: response to microbial phytotoxin	8.10E-04
32	GO:0009687: abscisic acid metabolic process	8.10E-04
33	GO:0045324: late endosome to vacuole transport	8.10E-04
34	GO:0006656: phosphatidylcholine biosynthetic process	1.02E-03
35	GO:0006904: vesicle docking involved in exocytosis	1.12E-03
36	GO:0048317: seed morphogenesis	1.25E-03
37	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.25E-03
38	GO:0006950: response to stress	1.46E-03
39	GO:0071470: cellular response to osmotic stress	1.49E-03
40	GO:0000911: cytokinesis by cell plate formation	1.49E-03
41	GO:0009610: response to symbiotic fungus	1.75E-03
42	GO:0015937: coenzyme A biosynthetic process	1.75E-03
43	GO:0048527: lateral root development	1.86E-03
44	GO:0032875: regulation of DNA endoreduplication	2.03E-03
45	GO:0006102: isocitrate metabolic process	2.03E-03
46	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.03E-03
47	GO:0009819: drought recovery	2.03E-03
48	GO:0048766: root hair initiation	2.03E-03
49	GO:0043068: positive regulation of programmed cell death	2.03E-03
50	GO:0009867: jasmonic acid mediated signaling pathway	2.04E-03
51	GO:0030968: endoplasmic reticulum unfolded protein response	2.32E-03
52	GO:0006631: fatty acid metabolic process	2.41E-03
53	GO:0009723: response to ethylene	2.56E-03
54	GO:0048366: leaf development	2.62E-03
55	GO:0009821: alkaloid biosynthetic process	2.62E-03
56	GO:0008202: steroid metabolic process	2.93E-03
57	GO:0009638: phototropism	2.93E-03
58	GO:2000280: regulation of root development	2.93E-03
59	GO:0006511: ubiquitin-dependent protein catabolic process	3.10E-03
60	GO:0010048: vernalization response	3.25E-03
61	GO:0072593: reactive oxygen species metabolic process	3.59E-03
62	GO:0051603: proteolysis involved in cellular protein catabolic process	3.63E-03
63	GO:0000266: mitochondrial fission	3.93E-03
64	GO:0012501: programmed cell death	3.93E-03
65	GO:0055046: microgametogenesis	4.30E-03
66	GO:0010102: lateral root morphogenesis	4.30E-03
67	GO:0009785: blue light signaling pathway	4.30E-03
68	GO:0009887: animal organ morphogenesis	4.66E-03
69	GO:0002237: response to molecule of bacterial origin	4.66E-03
70	GO:0010030: positive regulation of seed germination	5.04E-03
71	GO:0046854: phosphatidylinositol phosphorylation	5.04E-03
72	GO:0007031: peroxisome organization	5.04E-03
73	GO:0009825: multidimensional cell growth	5.04E-03
74	GO:2000377: regulation of reactive oxygen species metabolic process	5.84E-03
75	GO:0009695: jasmonic acid biosynthetic process	6.25E-03
76	GO:0051260: protein homooligomerization	6.67E-03
77	GO:0031348: negative regulation of defense response	7.11E-03
78	GO:0006730: one-carbon metabolic process	7.11E-03
79	GO:0009790: embryo development	7.27E-03
80	GO:0009693: ethylene biosynthetic process	7.55E-03
81	GO:0009561: megagametogenesis	8.00E-03
82	GO:0015031: protein transport	8.18E-03
83	GO:0040008: regulation of growth	8.20E-03
84	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.46E-03
85	GO:0042147: retrograde transport, endosome to Golgi	8.46E-03
86	GO:0051028: mRNA transport	8.46E-03
87	GO:0016567: protein ubiquitination	9.34E-03
88	GO:0010197: polar nucleus fusion	9.41E-03
89	GO:0071472: cellular response to salt stress	9.41E-03
90	GO:0010154: fruit development	9.41E-03
91	GO:0055072: iron ion homeostasis	1.04E-02
92	GO:0006623: protein targeting to vacuole	1.04E-02
93	GO:0006635: fatty acid beta-oxidation	1.09E-02
94	GO:0010193: response to ozone	1.09E-02
95	GO:0006891: intra-Golgi vesicle-mediated transport	1.09E-02
96	GO:0009630: gravitropism	1.14E-02
97	GO:0010583: response to cyclopentenone	1.14E-02
98	GO:0016032: viral process	1.14E-02
99	GO:0071281: cellular response to iron ion	1.20E-02
100	GO:0006914: autophagy	1.25E-02
101	GO:0006464: cellular protein modification process	1.25E-02
102	GO:0010286: heat acclimation	1.30E-02
103	GO:0016579: protein deubiquitination	1.36E-02
104	GO:0006970: response to osmotic stress	1.44E-02
105	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.47E-02
106	GO:0009816: defense response to bacterium, incompatible interaction	1.47E-02
107	GO:0009817: defense response to fungus, incompatible interaction	1.71E-02
108	GO:0010200: response to chitin	1.71E-02
109	GO:0007165: signal transduction	1.72E-02
110	GO:0048767: root hair elongation	1.77E-02
111	GO:0010311: lateral root formation	1.77E-02
112	GO:0045892: negative regulation of transcription, DNA-templated	2.01E-02
113	GO:0006886: intracellular protein transport	2.05E-02
114	GO:0006099: tricarboxylic acid cycle	2.09E-02
115	GO:0034599: cellular response to oxidative stress	2.09E-02
116	GO:0006979: response to oxidative stress	2.34E-02
117	GO:0051707: response to other organism	2.42E-02
118	GO:0008283: cell proliferation	2.42E-02
119	GO:0000209: protein polyubiquitination	2.49E-02
120	GO:0048364: root development	2.55E-02
121	GO:0031347: regulation of defense response	2.77E-02
122	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.77E-02
123	GO:0009846: pollen germination	2.85E-02
124	GO:0006813: potassium ion transport	2.99E-02
125	GO:0009873: ethylene-activated signaling pathway	3.16E-02
126	GO:0009909: regulation of flower development	3.22E-02
127	GO:0009734: auxin-activated signaling pathway	3.44E-02
128	GO:0048367: shoot system development	3.45E-02
129	GO:0009651: response to salt stress	3.48E-02
130	GO:0009908: flower development	3.92E-02
131	GO:0051726: regulation of cell cycle	4.01E-02
132	GO:0009738: abscisic acid-activated signaling pathway	4.19E-02
133	GO:0009611: response to wounding	4.42E-02
134	GO:0009058: biosynthetic process	4.69E-02
135	GO:0009845: seed germination	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0033550: MAP kinase tyrosine phosphatase activity	0.00E+00
2	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
3	GO:0004370: glycerol kinase activity	0.00E+00
4	GO:0004105: choline-phosphate cytidylyltransferase activity	1.10E-04
5	GO:0030544: Hsp70 protein binding	1.10E-04
6	GO:0005515: protein binding	2.28E-04
7	GO:0004103: choline kinase activity	2.57E-04
8	GO:0004594: pantothenate kinase activity	2.57E-04
9	GO:0004750: ribulose-phosphate 3-epimerase activity	2.57E-04
10	GO:0003988: acetyl-CoA C-acyltransferase activity	2.57E-04
11	GO:0019200: carbohydrate kinase activity	2.57E-04
12	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.57E-04
13	GO:0043130: ubiquitin binding	3.65E-04
14	GO:0004478: methionine adenosyltransferase activity	4.25E-04
15	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	6.10E-04
16	GO:0004416: hydroxyacylglutathione hydrolase activity	6.10E-04
17	GO:0003995: acyl-CoA dehydrogenase activity	8.10E-04
18	GO:0010294: abscisic acid glucosyltransferase activity	1.02E-03
19	GO:0017137: Rab GTPase binding	1.02E-03
20	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.02E-03
21	GO:0051213: dioxygenase activity	1.25E-03
22	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.49E-03
23	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.49E-03
24	GO:0005096: GTPase activator activity	1.69E-03
25	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.03E-03
26	GO:0008142: oxysterol binding	2.32E-03
27	GO:0035091: phosphatidylinositol binding	2.82E-03
28	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.25E-03
29	GO:0003924: GTPase activity	4.57E-03
30	GO:0004867: serine-type endopeptidase inhibitor activity	5.04E-03
31	GO:0004725: protein tyrosine phosphatase activity	5.44E-03
32	GO:0008270: zinc ion binding	5.67E-03
33	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.67E-03
34	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.67E-03
35	GO:0004298: threonine-type endopeptidase activity	6.67E-03
36	GO:0008565: protein transporter activity	7.45E-03
37	GO:0005249: voltage-gated potassium channel activity	8.93E-03
38	GO:0030276: clathrin binding	9.41E-03
39	GO:0000166: nucleotide binding	9.47E-03
40	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.09E-02
41	GO:0004197: cysteine-type endopeptidase activity	1.14E-02
42	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.20E-02
43	GO:0046982: protein heterodimerization activity	1.31E-02
44	GO:0008233: peptidase activity	1.63E-02
45	GO:0005524: ATP binding	1.63E-02
46	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.65E-02
47	GO:0061630: ubiquitin protein ligase activity	1.74E-02
48	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.02E-02
49	GO:0003746: translation elongation factor activity	2.02E-02
50	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.15E-02
51	GO:0051287: NAD binding	2.77E-02
52	GO:0031625: ubiquitin protein ligase binding	3.22E-02
53	GO:0016491: oxidoreductase activity	3.26E-02
54	GO:0004842: ubiquitin-protein transferase activity	3.46E-02
55	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.61E-02
56	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.61E-02
57	GO:0003729: mRNA binding	3.79E-02
58	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0071561: nucleus-vacuole junction	0.00E+00
2	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	1.10E-04
3	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	1.10E-04
4	GO:0045334: clathrin-coated endocytic vesicle	1.10E-04
5	GO:0048471: perinuclear region of cytoplasm	1.73E-04
6	GO:0035061: interchromatin granule	2.57E-04
7	GO:0008076: voltage-gated potassium channel complex	6.10E-04
8	GO:0000813: ESCRT I complex	1.02E-03
9	GO:0016363: nuclear matrix	1.49E-03
10	GO:0005643: nuclear pore	1.61E-03
11	GO:0005886: plasma membrane	1.87E-03
12	GO:0009514: glyoxysome	2.32E-03
13	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.39E-03
14	GO:0005777: peroxisome	2.40E-03
15	GO:0016602: CCAAT-binding factor complex	4.30E-03
16	GO:0005795: Golgi stack	5.04E-03
17	GO:0005839: proteasome core complex	6.67E-03
18	GO:0030136: clathrin-coated vesicle	8.46E-03
19	GO:0005770: late endosome	9.41E-03
20	GO:0009504: cell plate	1.04E-02
21	GO:0005737: cytoplasm	1.12E-02
22	GO:0005778: peroxisomal membrane	1.30E-02
23	GO:0005634: nucleus	1.68E-02
24	GO:0000786: nucleosome	1.96E-02
25	GO:0005622: intracellular	1.96E-02
26	GO:0031902: late endosome membrane	2.29E-02
27	GO:0043231: intracellular membrane-bounded organelle	2.70E-02
28	GO:0000502: proteasome complex	2.99E-02
29	GO:0005635: nuclear envelope	3.14E-02
30	GO:0005681: spliceosomal complex	3.37E-02
31	GO:0016607: nuclear speck	3.45E-02
32	GO:0010008: endosome membrane	3.45E-02
33	GO:0005834: heterotrimeric G-protein complex	3.53E-02
34	GO:0012505: endomembrane system	3.77E-02
35	GO:0009706: chloroplast inner membrane	3.85E-02
36	GO:0005654: nucleoplasm	4.43E-02
37	GO:0005829: cytosol	4.94E-02