co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0042593: glucose homeostasis	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:1901698: response to nitrogen compound	0.00E+00
6	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
7	GO:0042254: ribosome biogenesis	1.78E-07
8	GO:0010411: xyloglucan metabolic process	2.75E-07
9	GO:0006412: translation	1.23E-05
10	GO:0034220: ion transmembrane transport	2.17E-05
11	GO:0009735: response to cytokinin	8.75E-05
12	GO:0006833: water transport	1.20E-04
13	GO:0009826: unidimensional cell growth	1.45E-04
14	GO:0010444: guard mother cell differentiation	2.86E-04
15	GO:0042546: cell wall biogenesis	3.19E-04
16	GO:0071588: hydrogen peroxide mediated signaling pathway	3.37E-04
17	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.37E-04
18	GO:0070509: calcium ion import	3.37E-04
19	GO:0007263: nitric oxide mediated signal transduction	3.37E-04
20	GO:0046520: sphingoid biosynthetic process	3.37E-04
21	GO:0010442: guard cell morphogenesis	3.37E-04
22	GO:0032544: plastid translation	4.41E-04
23	GO:0009932: cell tip growth	4.41E-04
24	GO:0010583: response to cyclopentenone	5.28E-04
25	GO:0006783: heme biosynthetic process	5.29E-04
26	GO:0043069: negative regulation of programmed cell death	7.29E-04
27	GO:0006782: protoporphyrinogen IX biosynthetic process	7.29E-04
28	GO:0031648: protein destabilization	7.34E-04
29	GO:0006521: regulation of cellular amino acid metabolic process	7.34E-04
30	GO:0052541: plant-type cell wall cellulose metabolic process	7.34E-04
31	GO:0006695: cholesterol biosynthetic process	7.34E-04
32	GO:0060919: auxin influx	7.34E-04
33	GO:0010027: thylakoid membrane organization	7.75E-04
34	GO:0000038: very long-chain fatty acid metabolic process	8.40E-04
35	GO:0015995: chlorophyll biosynthetic process	9.50E-04
36	GO:0015706: nitrate transport	9.59E-04
37	GO:0071705: nitrogen compound transport	1.19E-03
38	GO:0045493: xylan catabolic process	1.19E-03
39	GO:0010143: cutin biosynthetic process	1.22E-03
40	GO:0010207: photosystem II assembly	1.22E-03
41	GO:0010030: positive regulation of seed germination	1.36E-03
42	GO:0010167: response to nitrate	1.36E-03
43	GO:2001141: regulation of RNA biosynthetic process	1.71E-03
44	GO:1902476: chloride transmembrane transport	1.71E-03
45	GO:0034059: response to anoxia	1.71E-03
46	GO:0080170: hydrogen peroxide transmembrane transport	1.71E-03
47	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.71E-03
48	GO:0006424: glutamyl-tRNA aminoacylation	1.71E-03
49	GO:0006631: fatty acid metabolic process	1.81E-03
50	GO:0045490: pectin catabolic process	1.89E-03
51	GO:0071249: cellular response to nitrate	2.30E-03
52	GO:0006183: GTP biosynthetic process	2.30E-03
53	GO:0030104: water homeostasis	2.30E-03
54	GO:0071555: cell wall organization	2.34E-03
55	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.43E-03
56	GO:0019722: calcium-mediated signaling	2.65E-03
57	GO:0034052: positive regulation of plant-type hypersensitive response	2.93E-03
58	GO:0032543: mitochondrial translation	2.93E-03
59	GO:0000413: protein peptidyl-prolyl isomerization	3.10E-03
60	GO:0042335: cuticle development	3.10E-03
61	GO:0006751: glutathione catabolic process	3.63E-03
62	GO:0042549: photosystem II stabilization	3.63E-03
63	GO:1902456: regulation of stomatal opening	3.63E-03
64	GO:0007035: vacuolar acidification	3.63E-03
65	GO:0032973: amino acid export	3.63E-03
66	GO:0016132: brassinosteroid biosynthetic process	4.12E-03
67	GO:0000302: response to reactive oxygen species	4.12E-03
68	GO:0010019: chloroplast-nucleus signaling pathway	4.37E-03
69	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.37E-03
70	GO:0009955: adaxial/abaxial pattern specification	4.37E-03
71	GO:0042372: phylloquinone biosynthetic process	4.37E-03
72	GO:0009612: response to mechanical stimulus	4.37E-03
73	GO:1901259: chloroplast rRNA processing	4.37E-03
74	GO:0006694: steroid biosynthetic process	4.37E-03
75	GO:0009828: plant-type cell wall loosening	4.99E-03
76	GO:0051510: regulation of unidimensional cell growth	5.15E-03
77	GO:0009610: response to symbiotic fungus	5.15E-03
78	GO:0009772: photosynthetic electron transport in photosystem II	5.15E-03
79	GO:0043090: amino acid import	5.15E-03
80	GO:0030497: fatty acid elongation	5.15E-03
81	GO:0006821: chloride transport	5.15E-03
82	GO:0009645: response to low light intensity stimulus	5.15E-03
83	GO:0050829: defense response to Gram-negative bacterium	5.15E-03
84	GO:0007267: cell-cell signaling	5.31E-03
85	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.38E-03
86	GO:0006810: transport	5.40E-03
87	GO:0016126: sterol biosynthetic process	5.96E-03
88	GO:0007155: cell adhesion	5.99E-03
89	GO:0043068: positive regulation of programmed cell death	5.99E-03
90	GO:0006605: protein targeting	5.99E-03
91	GO:0009808: lignin metabolic process	6.87E-03
92	GO:0071482: cellular response to light stimulus	6.87E-03
93	GO:0042744: hydrogen peroxide catabolic process	7.22E-03
94	GO:0000902: cell morphogenesis	7.79E-03
95	GO:0051865: protein autoubiquitination	7.79E-03
96	GO:0045337: farnesyl diphosphate biosynthetic process	7.79E-03
97	GO:0080144: amino acid homeostasis	7.79E-03
98	GO:0033384: geranyl diphosphate biosynthetic process	7.79E-03
99	GO:0000160: phosphorelay signal transduction system	8.19E-03
100	GO:0006633: fatty acid biosynthetic process	8.19E-03
101	GO:0009834: plant-type secondary cell wall biogenesis	8.59E-03
102	GO:0006779: porphyrin-containing compound biosynthetic process	8.75E-03
103	GO:0048829: root cap development	9.76E-03
104	GO:0006949: syncytium formation	9.76E-03
105	GO:0006535: cysteine biosynthetic process from serine	9.76E-03
106	GO:0055085: transmembrane transport	9.76E-03
107	GO:0034599: cellular response to oxidative stress	1.03E-02
108	GO:0006352: DNA-templated transcription, initiation	1.08E-02
109	GO:0048765: root hair cell differentiation	1.08E-02
110	GO:0030148: sphingolipid biosynthetic process	1.08E-02
111	GO:0010015: root morphogenesis	1.08E-02
112	GO:0006415: translational termination	1.08E-02
113	GO:0016024: CDP-diacylglycerol biosynthetic process	1.19E-02
114	GO:0050826: response to freezing	1.30E-02
115	GO:0009725: response to hormone	1.30E-02
116	GO:0008643: carbohydrate transport	1.38E-02
117	GO:0010053: root epidermal cell differentiation	1.54E-02
118	GO:0009969: xyloglucan biosynthetic process	1.54E-02
119	GO:0009658: chloroplast organization	1.61E-02
120	GO:0009664: plant-type cell wall organization	1.61E-02
121	GO:0005975: carbohydrate metabolic process	1.63E-02
122	GO:0006071: glycerol metabolic process	1.66E-02
123	GO:0019762: glucosinolate catabolic process	1.66E-02
124	GO:0010025: wax biosynthetic process	1.66E-02
125	GO:0046686: response to cadmium ion	1.72E-02
126	GO:0009736: cytokinin-activated signaling pathway	1.73E-02
127	GO:0005992: trehalose biosynthetic process	1.79E-02
128	GO:0019344: cysteine biosynthetic process	1.79E-02
129	GO:0000027: ribosomal large subunit assembly	1.79E-02
130	GO:0007049: cell cycle	1.85E-02
131	GO:0055114: oxidation-reduction process	1.88E-02
132	GO:0010026: trichome differentiation	1.92E-02
133	GO:0007017: microtubule-based process	1.92E-02
134	GO:0003333: amino acid transmembrane transport	2.05E-02
135	GO:0015992: proton transport	2.05E-02
136	GO:0048511: rhythmic process	2.05E-02
137	GO:0061077: chaperone-mediated protein folding	2.05E-02
138	GO:0080167: response to karrikin	2.11E-02
139	GO:0009626: plant-type hypersensitive response	2.18E-02
140	GO:0009416: response to light stimulus	2.19E-02
141	GO:0009814: defense response, incompatible interaction	2.19E-02
142	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.19E-02
143	GO:0035428: hexose transmembrane transport	2.19E-02
144	GO:0042545: cell wall modification	2.39E-02
145	GO:0009306: protein secretion	2.47E-02
146	GO:0006284: base-excision repair	2.47E-02
147	GO:0042127: regulation of cell proliferation	2.47E-02
148	GO:0051726: regulation of cell cycle	2.61E-02
149	GO:0009742: brassinosteroid mediated signaling pathway	2.61E-02
150	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.62E-02
151	GO:0070417: cellular response to cold	2.62E-02
152	GO:0045454: cell redox homeostasis	2.65E-02
153	GO:0000271: polysaccharide biosynthetic process	2.77E-02
154	GO:0010087: phloem or xylem histogenesis	2.77E-02
155	GO:0042631: cellular response to water deprivation	2.77E-02
156	GO:0000226: microtubule cytoskeleton organization	2.77E-02
157	GO:0042391: regulation of membrane potential	2.77E-02
158	GO:0046323: glucose import	2.92E-02
159	GO:0009741: response to brassinosteroid	2.92E-02
160	GO:0010305: leaf vascular tissue pattern formation	2.92E-02
161	GO:0006869: lipid transport	2.97E-02
162	GO:0042752: regulation of circadian rhythm	3.07E-02
163	GO:0009791: post-embryonic development	3.23E-02
164	GO:0002229: defense response to oomycetes	3.39E-02
165	GO:0007264: small GTPase mediated signal transduction	3.55E-02
166	GO:1901657: glycosyl compound metabolic process	3.72E-02
167	GO:0009567: double fertilization forming a zygote and endosperm	3.88E-02
168	GO:0040008: regulation of growth	4.05E-02
169	GO:0007623: circadian rhythm	4.24E-02
170	GO:0009627: systemic acquired resistance	4.76E-02
171	GO:0042128: nitrate assimilation	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0080132: fatty acid alpha-hydroxylase activity	0.00E+00
8	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0019843: rRNA binding	9.96E-12
11	GO:0003735: structural constituent of ribosome	2.70E-08
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.89E-06
13	GO:0005528: FK506 binding	5.72E-06
14	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.88E-05
15	GO:0015250: water channel activity	7.91E-05
16	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.07E-04
17	GO:0004130: cytochrome-c peroxidase activity	1.62E-04
18	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.48E-04
19	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	3.37E-04
20	GO:0000248: C-5 sterol desaturase activity	3.37E-04
21	GO:0000170: sphingosine hydroxylase activity	3.37E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.37E-04
23	GO:0052631: sphingolipid delta-8 desaturase activity	3.37E-04
24	GO:0004655: porphobilinogen synthase activity	3.37E-04
25	GO:0009671: nitrate:proton symporter activity	3.37E-04
26	GO:0004853: uroporphyrinogen decarboxylase activity	3.37E-04
27	GO:0003839: gamma-glutamylcyclotransferase activity	7.34E-04
28	GO:0003938: IMP dehydrogenase activity	7.34E-04
29	GO:0042284: sphingolipid delta-4 desaturase activity	7.34E-04
30	GO:0070330: aromatase activity	1.19E-03
31	GO:0050734: hydroxycinnamoyltransferase activity	1.19E-03
32	GO:0004148: dihydrolipoyl dehydrogenase activity	1.19E-03
33	GO:0003993: acid phosphatase activity	1.54E-03
34	GO:0033843: xyloglucan 6-xylosyltransferase activity	1.71E-03
35	GO:0016149: translation release factor activity, codon specific	1.71E-03
36	GO:0016851: magnesium chelatase activity	1.71E-03
37	GO:0046556: alpha-L-arabinofuranosidase activity	2.30E-03
38	GO:0001053: plastid sigma factor activity	2.30E-03
39	GO:0016987: sigma factor activity	2.30E-03
40	GO:0010328: auxin influx transmembrane transporter activity	2.30E-03
41	GO:0004506: squalene monooxygenase activity	2.30E-03
42	GO:0009044: xylan 1,4-beta-xylosidase activity	2.30E-03
43	GO:0005253: anion channel activity	2.30E-03
44	GO:0030570: pectate lyase activity	2.43E-03
45	GO:0008725: DNA-3-methyladenine glycosylase activity	2.93E-03
46	GO:0009922: fatty acid elongase activity	2.93E-03
47	GO:0003959: NADPH dehydrogenase activity	2.93E-03
48	GO:0018685: alkane 1-monooxygenase activity	2.93E-03
49	GO:0035252: UDP-xylosyltransferase activity	3.63E-03
50	GO:0016688: L-ascorbate peroxidase activity	3.63E-03
51	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.63E-03
52	GO:0008200: ion channel inhibitor activity	3.63E-03
53	GO:0005247: voltage-gated chloride channel activity	3.63E-03
54	GO:0016208: AMP binding	3.63E-03
55	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.63E-03
56	GO:0004650: polygalacturonase activity	4.10E-03
57	GO:0008289: lipid binding	4.21E-03
58	GO:0016491: oxidoreductase activity	4.26E-03
59	GO:0005242: inward rectifier potassium channel activity	4.37E-03
60	GO:0004124: cysteine synthase activity	4.37E-03
61	GO:0051920: peroxiredoxin activity	4.37E-03
62	GO:0005261: cation channel activity	4.37E-03
63	GO:0000156: phosphorelay response regulator activity	4.69E-03
64	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.31E-03
65	GO:0016597: amino acid binding	5.63E-03
66	GO:0016209: antioxidant activity	5.99E-03
67	GO:0102483: scopolin beta-glucosidase activity	7.03E-03
68	GO:0003747: translation release factor activity	7.79E-03
69	GO:0004337: geranyltranstransferase activity	7.79E-03
70	GO:0008889: glycerophosphodiester phosphodiesterase activity	7.79E-03
71	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	8.59E-03
72	GO:0015112: nitrate transmembrane transporter activity	8.75E-03
73	GO:0004805: trehalose-phosphatase activity	9.76E-03
74	GO:0004161: dimethylallyltranstransferase activity	1.08E-02
75	GO:0008422: beta-glucosidase activity	1.08E-02
76	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.08E-02
77	GO:0005262: calcium channel activity	1.30E-02
78	GO:0004565: beta-galactosidase activity	1.30E-02
79	GO:0015293: symporter activity	1.44E-02
80	GO:0030552: cAMP binding	1.54E-02
81	GO:0030553: cGMP binding	1.54E-02
82	GO:0051119: sugar transmembrane transporter activity	1.54E-02
83	GO:0004601: peroxidase activity	1.61E-02
84	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.66E-02
85	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.66E-02
86	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.66E-02
87	GO:0015171: amino acid transmembrane transporter activity	1.91E-02
88	GO:0045330: aspartyl esterase activity	1.91E-02
89	GO:0005216: ion channel activity	1.92E-02
90	GO:0005506: iron ion binding	2.12E-02
91	GO:0030599: pectinesterase activity	2.32E-02
92	GO:0052689: carboxylic ester hydrolase activity	2.40E-02
93	GO:0008514: organic anion transmembrane transporter activity	2.47E-02
94	GO:0016746: transferase activity, transferring acyl groups	2.53E-02
95	GO:0003824: catalytic activity	2.55E-02
96	GO:0030551: cyclic nucleotide binding	2.77E-02
97	GO:0004871: signal transducer activity	2.81E-02
98	GO:0016740: transferase activity	2.94E-02
99	GO:0005355: glucose transmembrane transporter activity	3.07E-02
100	GO:0019901: protein kinase binding	3.23E-02
101	GO:0016829: lyase activity	3.33E-02
102	GO:0048038: quinone binding	3.39E-02
103	GO:0015144: carbohydrate transmembrane transporter activity	3.68E-02
104	GO:0016791: phosphatase activity	3.88E-02
105	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.96E-02
106	GO:0005200: structural constituent of cytoskeleton	4.05E-02
107	GO:0004672: protein kinase activity	4.12E-02
108	GO:0005351: sugar:proton symporter activity	4.15E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009505: plant-type cell wall	5.68E-16
3	GO:0005576: extracellular region	7.30E-12
4	GO:0009570: chloroplast stroma	1.04E-10
5	GO:0048046: apoplast	1.39E-10
6	GO:0031225: anchored component of membrane	3.66E-10
7	GO:0009543: chloroplast thylakoid lumen	5.55E-09
8	GO:0005618: cell wall	1.33E-08
9	GO:0009507: chloroplast	4.44E-08
10	GO:0005840: ribosome	2.20E-07
11	GO:0046658: anchored component of plasma membrane	1.17E-06
12	GO:0031977: thylakoid lumen	1.40E-06
13	GO:0009941: chloroplast envelope	1.44E-06
14	GO:0016020: membrane	3.79E-06
15	GO:0009534: chloroplast thylakoid	6.08E-06
16	GO:0009535: chloroplast thylakoid membrane	1.27E-05
17	GO:0009579: thylakoid	3.78E-05
18	GO:0009506: plasmodesma	1.63E-04
19	GO:0043674: columella	3.37E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.37E-04
21	GO:0005886: plasma membrane	8.92E-04
22	GO:0005887: integral component of plasma membrane	1.07E-03
23	GO:0010007: magnesium chelatase complex	1.19E-03
24	GO:0009509: chromoplast	1.19E-03
25	GO:0015935: small ribosomal subunit	2.04E-03
26	GO:0005773: vacuole	2.87E-03
27	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.93E-03
28	GO:0034707: chloride channel complex	3.63E-03
29	GO:0009533: chloroplast stromal thylakoid	5.15E-03
30	GO:0042807: central vacuole	5.15E-03
31	GO:0005763: mitochondrial small ribosomal subunit	7.79E-03
32	GO:0045298: tubulin complex	7.79E-03
33	GO:0009705: plant-type vacuole membrane	9.23E-03
34	GO:0000311: plastid large ribosomal subunit	1.19E-02
35	GO:0005774: vacuolar membrane	1.37E-02
36	GO:0005783: endoplasmic reticulum	1.42E-02
37	GO:0005789: endoplasmic reticulum membrane	1.65E-02
38	GO:0009654: photosystem II oxygen evolving complex	1.92E-02
39	GO:0022625: cytosolic large ribosomal subunit	2.25E-02
40	GO:0019898: extrinsic component of membrane	3.23E-02
41	GO:0071944: cell periphery	3.72E-02
42	GO:0005778: peroxisomal membrane	4.05E-02