Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G15850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0009249: protein lipoylation0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:1901698: response to nitrogen compound0.00E+00
6GO:2000121: regulation of removal of superoxide radicals0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0005996: monosaccharide metabolic process0.00E+00
10GO:0009106: lipoate metabolic process0.00E+00
11GO:0042371: vitamin K biosynthetic process0.00E+00
12GO:0006399: tRNA metabolic process0.00E+00
13GO:0006412: translation1.76E-21
14GO:0032544: plastid translation1.81E-18
15GO:0015979: photosynthesis1.01E-16
16GO:0015995: chlorophyll biosynthetic process2.86E-16
17GO:0042254: ribosome biogenesis1.25E-12
18GO:0009735: response to cytokinin1.38E-10
19GO:0009658: chloroplast organization8.61E-07
20GO:0006782: protoporphyrinogen IX biosynthetic process1.78E-06
21GO:0009773: photosynthetic electron transport in photosystem I2.53E-06
22GO:1902326: positive regulation of chlorophyll biosynthetic process8.48E-06
23GO:1901259: chloroplast rRNA processing8.52E-06
24GO:0010027: thylakoid membrane organization1.18E-05
25GO:0006783: heme biosynthetic process3.90E-05
26GO:0015976: carbon utilization1.11E-04
27GO:0009409: response to cold1.44E-04
28GO:0045038: protein import into chloroplast thylakoid membrane1.71E-04
29GO:0042549: photosystem II stabilization2.44E-04
30GO:0009793: embryo development ending in seed dormancy2.89E-04
31GO:0042372: phylloquinone biosynthetic process3.27E-04
32GO:0009772: photosynthetic electron transport in photosystem II4.22E-04
33GO:1902458: positive regulation of stomatal opening4.37E-04
34GO:0034337: RNA folding4.37E-04
35GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.37E-04
36GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.37E-04
37GO:0043489: RNA stabilization4.37E-04
38GO:1904966: positive regulation of vitamin E biosynthetic process4.37E-04
39GO:1904964: positive regulation of phytol biosynthetic process4.37E-04
40GO:0009306: protein secretion4.47E-04
41GO:0048564: photosystem I assembly5.27E-04
42GO:0071482: cellular response to light stimulus6.43E-04
43GO:0009657: plastid organization6.43E-04
44GO:0006779: porphyrin-containing compound biosynthetic process9.07E-04
45GO:1903426: regulation of reactive oxygen species biosynthetic process9.44E-04
46GO:0010275: NAD(P)H dehydrogenase complex assembly9.44E-04
47GO:0034755: iron ion transmembrane transport9.44E-04
48GO:1904143: positive regulation of carotenoid biosynthetic process9.44E-04
49GO:0043085: positive regulation of catalytic activity1.21E-03
50GO:0006352: DNA-templated transcription, initiation1.21E-03
51GO:0015706: nitrate transport1.39E-03
52GO:0005977: glycogen metabolic process1.54E-03
53GO:0006011: UDP-glucose metabolic process1.54E-03
54GO:0015714: phosphoenolpyruvate transport1.54E-03
55GO:0006954: inflammatory response1.54E-03
56GO:0006518: peptide metabolic process1.54E-03
57GO:0010581: regulation of starch biosynthetic process1.54E-03
58GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.54E-03
59GO:0071705: nitrogen compound transport1.54E-03
60GO:0006696: ergosterol biosynthetic process1.54E-03
61GO:0009725: response to hormone1.58E-03
62GO:0006006: glucose metabolic process1.58E-03
63GO:0018298: protein-chromophore linkage1.76E-03
64GO:0010207: photosystem II assembly1.78E-03
65GO:0010167: response to nitrate2.00E-03
66GO:0090351: seedling development2.00E-03
67GO:1902476: chloride transmembrane transport2.22E-03
68GO:0051513: regulation of monopolar cell growth2.22E-03
69GO:0009800: cinnamic acid biosynthetic process2.22E-03
70GO:0006241: CTP biosynthetic process2.22E-03
71GO:0006165: nucleoside diphosphate phosphorylation2.22E-03
72GO:0006228: UTP biosynthetic process2.22E-03
73GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.22E-03
74GO:2001141: regulation of RNA biosynthetic process2.22E-03
75GO:0006636: unsaturated fatty acid biosynthetic process2.23E-03
76GO:0009790: embryo development2.65E-03
77GO:0019676: ammonia assimilation cycle2.99E-03
78GO:0071249: cellular response to nitrate2.99E-03
79GO:0006183: GTP biosynthetic process2.99E-03
80GO:0045727: positive regulation of translation2.99E-03
81GO:2000122: negative regulation of stomatal complex development2.99E-03
82GO:0015994: chlorophyll metabolic process2.99E-03
83GO:0015713: phosphoglycerate transport2.99E-03
84GO:0071483: cellular response to blue light2.99E-03
85GO:0010037: response to carbon dioxide2.99E-03
86GO:0006542: glutamine biosynthetic process2.99E-03
87GO:0006730: one-carbon metabolic process3.28E-03
88GO:0010114: response to red light3.29E-03
89GO:0007623: circadian rhythm3.43E-03
90GO:0009107: lipoate biosynthetic process3.83E-03
91GO:0009247: glycolipid biosynthetic process3.83E-03
92GO:0034052: positive regulation of plant-type hypersensitive response3.83E-03
93GO:0032543: mitochondrial translation3.83E-03
94GO:0006564: L-serine biosynthetic process3.83E-03
95GO:0010236: plastoquinone biosynthetic process3.83E-03
96GO:0016117: carotenoid biosynthetic process4.22E-03
97GO:0006655: phosphatidylglycerol biosynthetic process4.74E-03
98GO:0006559: L-phenylalanine catabolic process4.74E-03
99GO:0032973: amino acid export4.74E-03
100GO:0010942: positive regulation of cell death4.74E-03
101GO:0009741: response to brassinosteroid4.92E-03
102GO:0046686: response to cadmium ion5.37E-03
103GO:0009955: adaxial/abaxial pattern specification5.72E-03
104GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.72E-03
105GO:0009854: oxidative photosynthetic carbon pathway5.72E-03
106GO:0010019: chloroplast-nucleus signaling pathway5.72E-03
107GO:0032502: developmental process6.50E-03
108GO:0009610: response to symbiotic fungus6.76E-03
109GO:0043090: amino acid import6.76E-03
110GO:0006821: chloride transport6.76E-03
111GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.76E-03
112GO:0010444: guard mother cell differentiation6.76E-03
113GO:0050829: defense response to Gram-negative bacterium6.76E-03
114GO:0009231: riboflavin biosynthetic process7.86E-03
115GO:0052543: callose deposition in cell wall7.86E-03
116GO:0043068: positive regulation of programmed cell death7.86E-03
117GO:0006605: protein targeting7.86E-03
118GO:0019375: galactolipid biosynthetic process7.86E-03
119GO:0042255: ribosome assembly7.86E-03
120GO:2000070: regulation of response to water deprivation7.86E-03
121GO:0009699: phenylpropanoid biosynthetic process9.03E-03
122GO:0019430: removal of superoxide radicals9.03E-03
123GO:0017004: cytochrome complex assembly9.03E-03
124GO:0009051: pentose-phosphate shunt, oxidative branch1.03E-02
125GO:0009821: alkaloid biosynthetic process1.03E-02
126GO:0009245: lipid A biosynthetic process1.03E-02
127GO:0010206: photosystem II repair1.03E-02
128GO:0080144: amino acid homeostasis1.03E-02
129GO:0000373: Group II intron splicing1.03E-02
130GO:0010205: photoinhibition1.15E-02
131GO:0010380: regulation of chlorophyll biosynthetic process1.15E-02
132GO:0000160: phosphorelay signal transduction system1.21E-02
133GO:0009299: mRNA transcription1.29E-02
134GO:0006535: cysteine biosynthetic process from serine1.29E-02
135GO:0006633: fatty acid biosynthetic process1.35E-02
136GO:0019684: photosynthesis, light reaction1.43E-02
137GO:0009698: phenylpropanoid metabolic process1.43E-02
138GO:0009089: lysine biosynthetic process via diaminopimelate1.43E-02
139GO:0009073: aromatic amino acid family biosynthetic process1.43E-02
140GO:0006879: cellular iron ion homeostasis1.43E-02
141GO:0000272: polysaccharide catabolic process1.43E-02
142GO:0006415: translational termination1.43E-02
143GO:0009750: response to fructose1.43E-02
144GO:0018119: peptidyl-cysteine S-nitrosylation1.43E-02
145GO:0009853: photorespiration1.47E-02
146GO:0009637: response to blue light1.47E-02
147GO:0009451: RNA modification1.56E-02
148GO:0016024: CDP-diacylglycerol biosynthetic process1.57E-02
149GO:0045037: protein import into chloroplast stroma1.57E-02
150GO:0010628: positive regulation of gene expression1.72E-02
151GO:0050826: response to freezing1.72E-02
152GO:0006397: mRNA processing1.78E-02
153GO:0019253: reductive pentose-phosphate cycle1.87E-02
154GO:0009744: response to sucrose1.90E-02
155GO:0019762: glucosinolate catabolic process2.20E-02
156GO:0019344: cysteine biosynthetic process2.36E-02
157GO:0000027: ribosomal large subunit assembly2.36E-02
158GO:0055114: oxidation-reduction process2.40E-02
159GO:0009768: photosynthesis, light harvesting in photosystem I2.54E-02
160GO:0009736: cytokinin-activated signaling pathway2.56E-02
161GO:0006364: rRNA processing2.56E-02
162GO:0019915: lipid storage2.71E-02
163GO:0061077: chaperone-mediated protein folding2.71E-02
164GO:0006417: regulation of translation2.83E-02
165GO:0009814: defense response, incompatible interaction2.89E-02
166GO:0016226: iron-sulfur cluster assembly2.89E-02
167GO:0006096: glycolytic process3.02E-02
168GO:0009411: response to UV3.08E-02
169GO:0006284: base-excision repair3.27E-02
170GO:0009561: megagametogenesis3.27E-02
171GO:0009740: gibberellic acid mediated signaling pathway3.43E-02
172GO:0042545: cell wall modification3.53E-02
173GO:0042631: cellular response to water deprivation3.66E-02
174GO:0042335: cuticle development3.66E-02
175GO:0000413: protein peptidyl-prolyl isomerization3.66E-02
176GO:0006396: RNA processing3.74E-02
177GO:0009742: brassinosteroid mediated signaling pathway3.85E-02
178GO:0009416: response to light stimulus3.89E-02
179GO:0009611: response to wounding4.02E-02
180GO:0009646: response to absence of light4.06E-02
181GO:0015986: ATP synthesis coupled proton transport4.06E-02
182GO:0042742: defense response to bacterium4.18E-02
183GO:0009749: response to glucose4.27E-02
184GO:0045454: cell redox homeostasis4.30E-02
185GO:0000302: response to reactive oxygen species4.48E-02
186GO:0002229: defense response to oomycetes4.48E-02
RankGO TermAdjusted P value
1GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
7GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
12GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
13GO:0046905: phytoene synthase activity0.00E+00
14GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
15GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0019843: rRNA binding1.16E-36
18GO:0003735: structural constituent of ribosome4.66E-26
19GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.48E-06
20GO:0016851: magnesium chelatase activity6.33E-05
21GO:0051537: 2 iron, 2 sulfur cluster binding8.47E-05
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.97E-05
23GO:0001053: plastid sigma factor activity1.11E-04
24GO:0016987: sigma factor activity1.11E-04
25GO:0005528: FK506 binding2.41E-04
26GO:0019899: enzyme binding4.22E-04
27GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.37E-04
28GO:0046906: tetrapyrrole binding4.37E-04
29GO:0015121: phosphoenolpyruvate:phosphate antiporter activity4.37E-04
30GO:0004655: porphobilinogen synthase activity4.37E-04
31GO:0009671: nitrate:proton symporter activity4.37E-04
32GO:0051996: squalene synthase activity4.37E-04
33GO:0045485: omega-6 fatty acid desaturase activity4.37E-04
34GO:0010297: heteropolysaccharide binding9.44E-04
35GO:0043425: bHLH transcription factor binding9.44E-04
36GO:0009977: proton motive force dependent protein transmembrane transporter activity9.44E-04
37GO:0004617: phosphoglycerate dehydrogenase activity9.44E-04
38GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity9.44E-04
39GO:0016415: octanoyltransferase activity9.44E-04
40GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.44E-04
41GO:0016630: protochlorophyllide reductase activity9.44E-04
42GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.44E-04
43GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.44E-04
44GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.44E-04
45GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.44E-04
46GO:0017118: lipoyltransferase activity9.44E-04
47GO:0047746: chlorophyllase activity9.44E-04
48GO:0042389: omega-3 fatty acid desaturase activity9.44E-04
49GO:0016168: chlorophyll binding1.34E-03
50GO:0010277: chlorophyllide a oxygenase [overall] activity1.54E-03
51GO:0045548: phenylalanine ammonia-lyase activity1.54E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.54E-03
53GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity1.54E-03
54GO:0003935: GTP cyclohydrolase II activity1.54E-03
55GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.54E-03
56GO:0031072: heat shock protein binding1.58E-03
57GO:0004089: carbonate dehydratase activity1.58E-03
58GO:0008266: poly(U) RNA binding1.78E-03
59GO:0008097: 5S rRNA binding2.22E-03
60GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.22E-03
61GO:0035250: UDP-galactosyltransferase activity2.22E-03
62GO:0016149: translation release factor activity, codon specific2.22E-03
63GO:0004550: nucleoside diphosphate kinase activity2.22E-03
64GO:0004345: glucose-6-phosphate dehydrogenase activity2.99E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity2.99E-03
66GO:0005253: anion channel activity2.99E-03
67GO:0043495: protein anchor2.99E-03
68GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.99E-03
69GO:0015120: phosphoglycerate transmembrane transporter activity2.99E-03
70GO:0004659: prenyltransferase activity2.99E-03
71GO:0022891: substrate-specific transmembrane transporter activity3.58E-03
72GO:0008725: DNA-3-methyladenine glycosylase activity3.83E-03
73GO:0003959: NADPH dehydrogenase activity3.83E-03
74GO:0016773: phosphotransferase activity, alcohol group as acceptor3.83E-03
75GO:0004356: glutamate-ammonia ligase activity3.83E-03
76GO:0003727: single-stranded RNA binding3.89E-03
77GO:0005247: voltage-gated chloride channel activity4.74E-03
78GO:0031177: phosphopantetheine binding4.74E-03
79GO:0004130: cytochrome-c peroxidase activity4.74E-03
80GO:0016208: AMP binding4.74E-03
81GO:0009055: electron carrier activity5.30E-03
82GO:0004124: cysteine synthase activity5.72E-03
83GO:0000035: acyl binding5.72E-03
84GO:0003723: RNA binding6.01E-03
85GO:0000156: phosphorelay response regulator activity6.93E-03
86GO:0051082: unfolded protein binding7.56E-03
87GO:0008312: 7S RNA binding7.86E-03
88GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process7.86E-03
89GO:0016597: amino acid binding8.32E-03
90GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.03E-03
91GO:0003747: translation release factor activity1.03E-02
92GO:0015112: nitrate transmembrane transporter activity1.15E-02
93GO:0005381: iron ion transmembrane transporter activity1.15E-02
94GO:0016844: strictosidine synthase activity1.15E-02
95GO:0004222: metalloendopeptidase activity1.27E-02
96GO:0008047: enzyme activator activity1.29E-02
97GO:0008794: arsenate reductase (glutaredoxin) activity1.43E-02
98GO:0050661: NADP binding1.67E-02
99GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.87E-02
100GO:0004185: serine-type carboxypeptidase activity1.90E-02
101GO:0008146: sulfotransferase activity2.03E-02
102GO:0051119: sugar transmembrane transporter activity2.03E-02
103GO:0031409: pigment binding2.20E-02
104GO:0051287: NAD binding2.30E-02
105GO:0051536: iron-sulfur cluster binding2.36E-02
106GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.56E-02
107GO:0045330: aspartyl esterase activity2.83E-02
108GO:0003756: protein disulfide isomerase activity3.27E-02
109GO:0003729: mRNA binding3.29E-02
110GO:0030599: pectinesterase activity3.43E-02
111GO:0005509: calcium ion binding3.66E-02
112GO:0015035: protein disulfide oxidoreductase activity3.74E-02
113GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.86E-02
114GO:0004791: thioredoxin-disulfide reductase activity4.06E-02
115GO:0050662: coenzyme binding4.06E-02
116GO:0010181: FMN binding4.06E-02
117GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.91E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast9.38E-97
5GO:0009941: chloroplast envelope1.75E-59
6GO:0009570: chloroplast stroma3.55E-56
7GO:0009535: chloroplast thylakoid membrane5.58E-44
8GO:0009579: thylakoid1.77E-26
9GO:0005840: ribosome1.70E-25
10GO:0009534: chloroplast thylakoid3.33E-21
11GO:0009543: chloroplast thylakoid lumen3.95E-21
12GO:0031977: thylakoid lumen1.18E-11
13GO:0000311: plastid large ribosomal subunit8.84E-10
14GO:0031969: chloroplast membrane1.17E-09
15GO:0009654: photosystem II oxygen evolving complex1.04E-08
16GO:0009706: chloroplast inner membrane2.04E-07
17GO:0019898: extrinsic component of membrane3.76E-06
18GO:0009536: plastid4.47E-06
19GO:0000312: plastid small ribosomal subunit6.22E-06
20GO:0033281: TAT protein transport complex2.92E-05
21GO:0010007: magnesium chelatase complex2.92E-05
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.90E-05
23GO:0009523: photosystem II7.09E-05
24GO:0016020: membrane1.22E-04
25GO:0030095: chloroplast photosystem II1.51E-04
26GO:0015935: small ribosomal subunit3.15E-04
27GO:0015934: large ribosomal subunit3.19E-04
28GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex4.37E-04
29GO:0009547: plastid ribosome4.37E-04
30GO:0009522: photosystem I6.63E-04
31GO:0005763: mitochondrial small ribosomal subunit7.70E-04
32GO:0000427: plastid-encoded plastid RNA polymerase complex9.44E-04
33GO:0042170: plastid membrane9.44E-04
34GO:0080085: signal recognition particle, chloroplast targeting9.44E-04
35GO:0010319: stromule1.08E-03
36GO:0009295: nucleoid1.08E-03
37GO:0030529: intracellular ribonucleoprotein complex1.25E-03
38GO:0009509: chromoplast1.54E-03
39GO:0010287: plastoglobule1.93E-03
40GO:0042646: plastid nucleoid2.22E-03
41GO:0042651: thylakoid membrane2.73E-03
42GO:0034707: chloride channel complex4.74E-03
43GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.74E-03
44GO:0016363: nuclear matrix5.72E-03
45GO:0005762: mitochondrial large ribosomal subunit5.72E-03
46GO:0009539: photosystem II reaction center9.03E-03
47GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.03E-03
48GO:0022626: cytosolic ribosome1.18E-02
49GO:0032040: small-subunit processome1.57E-02
50GO:0009508: plastid chromosome1.72E-02
51GO:0019013: viral nucleocapsid1.72E-02
52GO:0030076: light-harvesting complex2.03E-02
53GO:0022627: cytosolic small ribosomal subunit2.17E-02
54GO:0022625: cytosolic large ribosomal subunit3.67E-02
55GO:0071944: cell periphery4.91E-02
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Gene type



Gene DE type