co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G15680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0060416: response to growth hormone	0.00E+00
4	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
5	GO:0008064: regulation of actin polymerization or depolymerization	0.00E+00
6	GO:0051493: regulation of cytoskeleton organization	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0071555: cell wall organization	8.40E-06
9	GO:0042546: cell wall biogenesis	1.16E-05
10	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.22E-05
11	GO:0010583: response to cyclopentenone	1.89E-05
12	GO:0010411: xyloglucan metabolic process	4.82E-05
13	GO:0016998: cell wall macromolecule catabolic process	1.00E-04
14	GO:0010442: guard cell morphogenesis	2.51E-04
15	GO:0043007: maintenance of rDNA	2.51E-04
16	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.51E-04
17	GO:0060627: regulation of vesicle-mediated transport	2.51E-04
18	GO:0010115: regulation of abscisic acid biosynthetic process	5.53E-04
19	GO:0045717: negative regulation of fatty acid biosynthetic process	5.53E-04
20	GO:0080148: negative regulation of response to water deprivation	5.53E-04
21	GO:0010289: homogalacturonan biosynthetic process	5.53E-04
22	GO:0052541: plant-type cell wall cellulose metabolic process	5.53E-04
23	GO:0010198: synergid death	5.53E-04
24	GO:0006695: cholesterol biosynthetic process	5.53E-04
25	GO:0006633: fatty acid biosynthetic process	8.53E-04
26	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.99E-04
27	GO:1902448: positive regulation of shade avoidance	8.99E-04
28	GO:0006424: glutamyl-tRNA aminoacylation	1.28E-03
29	GO:0046739: transport of virus in multicellular host	1.28E-03
30	GO:0055070: copper ion homeostasis	1.28E-03
31	GO:0007231: osmosensory signaling pathway	1.28E-03
32	GO:0051639: actin filament network formation	1.28E-03
33	GO:0034059: response to anoxia	1.28E-03
34	GO:0009664: plant-type cell wall organization	1.55E-03
35	GO:0000919: cell plate assembly	1.71E-03
36	GO:0033500: carbohydrate homeostasis	1.71E-03
37	GO:0008295: spermidine biosynthetic process	1.71E-03
38	GO:0006749: glutathione metabolic process	1.71E-03
39	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.71E-03
40	GO:0015976: carbon utilization	1.71E-03
41	GO:0051764: actin crosslink formation	1.71E-03
42	GO:0006183: GTP biosynthetic process	1.71E-03
43	GO:0009826: unidimensional cell growth	1.79E-03
44	GO:0000271: polysaccharide biosynthetic process	2.02E-03
45	GO:0000304: response to singlet oxygen	2.19E-03
46	GO:0032543: mitochondrial translation	2.19E-03
47	GO:0045038: protein import into chloroplast thylakoid membrane	2.19E-03
48	GO:0035434: copper ion transmembrane transport	2.19E-03
49	GO:0016123: xanthophyll biosynthetic process	2.19E-03
50	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.70E-03
51	GO:0006796: phosphate-containing compound metabolic process	2.70E-03
52	GO:0010190: cytochrome b6f complex assembly	2.70E-03
53	GO:0006561: proline biosynthetic process	2.70E-03
54	GO:0010405: arabinogalactan protein metabolic process	2.70E-03
55	GO:0006751: glutathione catabolic process	2.70E-03
56	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.70E-03
57	GO:0042372: phylloquinone biosynthetic process	3.24E-03
58	GO:0006694: steroid biosynthetic process	3.24E-03
59	GO:0009554: megasporogenesis	3.24E-03
60	GO:0009828: plant-type cell wall loosening	3.24E-03
61	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.82E-03
62	GO:0071669: plant-type cell wall organization or biogenesis	3.82E-03
63	GO:0010444: guard mother cell differentiation	3.82E-03
64	GO:0098869: cellular oxidant detoxification	3.82E-03
65	GO:0006955: immune response	3.82E-03
66	GO:0016126: sterol biosynthetic process	3.87E-03
67	GO:0006869: lipid transport	3.99E-03
68	GO:0009690: cytokinin metabolic process	4.44E-03
69	GO:0009704: de-etiolation	4.44E-03
70	GO:0010928: regulation of auxin mediated signaling pathway	4.44E-03
71	GO:0015995: chlorophyll biosynthetic process	4.55E-03
72	GO:0030244: cellulose biosynthetic process	5.04E-03
73	GO:0010497: plasmodesmata-mediated intercellular transport	5.08E-03
74	GO:0006526: arginine biosynthetic process	5.08E-03
75	GO:0032544: plastid translation	5.08E-03
76	GO:0009808: lignin metabolic process	5.08E-03
77	GO:0009932: cell tip growth	5.08E-03
78	GO:0009407: toxin catabolic process	5.56E-03
79	GO:0009834: plant-type secondary cell wall biogenesis	5.56E-03
80	GO:0045337: farnesyl diphosphate biosynthetic process	5.75E-03
81	GO:0033384: geranyl diphosphate biosynthetic process	5.75E-03
82	GO:0016051: carbohydrate biosynthetic process	6.39E-03
83	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	6.46E-03
84	GO:0009688: abscisic acid biosynthetic process	7.20E-03
85	GO:0043069: negative regulation of programmed cell death	7.20E-03
86	GO:0006949: syncytium formation	7.20E-03
87	GO:0030001: metal ion transport	7.28E-03
88	GO:0006631: fatty acid metabolic process	7.59E-03
89	GO:0006415: translational termination	7.96E-03
90	GO:0009750: response to fructose	7.96E-03
91	GO:0018119: peptidyl-cysteine S-nitrosylation	7.96E-03
92	GO:0030148: sphingolipid biosynthetic process	7.96E-03
93	GO:0006816: calcium ion transport	7.96E-03
94	GO:0009658: chloroplast organization	9.25E-03
95	GO:0009636: response to toxic substance	9.26E-03
96	GO:0042254: ribosome biogenesis	9.47E-03
97	GO:0030036: actin cytoskeleton organization	9.57E-03
98	GO:0050826: response to freezing	9.57E-03
99	GO:0009767: photosynthetic electron transport chain	9.57E-03
100	GO:0009414: response to water deprivation	9.85E-03
101	GO:0042538: hyperosmotic salinity response	1.04E-02
102	GO:0070588: calcium ion transmembrane transport	1.13E-02
103	GO:0006071: glycerol metabolic process	1.22E-02
104	GO:0006833: water transport	1.22E-02
105	GO:0051017: actin filament bundle assembly	1.31E-02
106	GO:0006468: protein phosphorylation	1.36E-02
107	GO:0010026: trichome differentiation	1.41E-02
108	GO:0007017: microtubule-based process	1.41E-02
109	GO:0019953: sexual reproduction	1.41E-02
110	GO:0031408: oxylipin biosynthetic process	1.50E-02
111	GO:0042545: cell wall modification	1.54E-02
112	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.71E-02
113	GO:0019722: calcium-mediated signaling	1.81E-02
114	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.92E-02
115	GO:0042335: cuticle development	2.02E-02
116	GO:0034220: ion transmembrane transport	2.02E-02
117	GO:0000413: protein peptidyl-prolyl isomerization	2.02E-02
118	GO:0005975: carbohydrate metabolic process	2.10E-02
119	GO:0045489: pectin biosynthetic process	2.14E-02
120	GO:0008360: regulation of cell shape	2.14E-02
121	GO:0009958: positive gravitropism	2.14E-02
122	GO:0006520: cellular amino acid metabolic process	2.14E-02
123	GO:0010182: sugar mediated signaling pathway	2.14E-02
124	GO:0071554: cell wall organization or biogenesis	2.48E-02
125	GO:0016132: brassinosteroid biosynthetic process	2.48E-02
126	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.48E-02
127	GO:0032502: developmental process	2.60E-02
128	GO:0007264: small GTPase mediated signal transduction	2.60E-02
129	GO:0040008: regulation of growth	2.63E-02
130	GO:0045490: pectin catabolic process	2.75E-02
131	GO:0016125: sterol metabolic process	2.85E-02
132	GO:0007267: cell-cell signaling	2.97E-02
133	GO:0051607: defense response to virus	3.10E-02
134	GO:0007166: cell surface receptor signaling pathway	3.14E-02
135	GO:0010027: thylakoid membrane organization	3.23E-02
136	GO:0042128: nitrate assimilation	3.49E-02
137	GO:0016311: dephosphorylation	3.76E-02
138	GO:0009832: plant-type cell wall biogenesis	4.04E-02
139	GO:0000160: phosphorelay signal transduction system	4.04E-02
140	GO:0009813: flavonoid biosynthetic process	4.04E-02
141	GO:0009793: embryo development ending in seed dormancy	4.23E-02
142	GO:0048527: lateral root development	4.32E-02
143	GO:0007568: aging	4.32E-02
144	GO:0006970: response to osmotic stress	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0050613: delta14-sterol reductase activity	0.00E+00
4	GO:0047661: amino-acid racemase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
7	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0050614: delta24-sterol reductase activity	0.00E+00
10	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
11	GO:0004496: mevalonate kinase activity	0.00E+00
12	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.64E-05
13	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.82E-05
14	GO:0051753: mannan synthase activity	1.39E-04
15	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.51E-04
16	GO:0047560: 3-dehydrosphinganine reductase activity	2.51E-04
17	GO:0009374: biotin binding	2.51E-04
18	GO:0004328: formamidase activity	2.51E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.51E-04
20	GO:0004560: alpha-L-fucosidase activity	2.51E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.51E-04
22	GO:0042834: peptidoglycan binding	2.51E-04
23	GO:0080132: fatty acid alpha-hydroxylase activity	2.51E-04
24	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.53E-04
25	GO:0003839: gamma-glutamylcyclotransferase activity	5.53E-04
26	GO:0003938: IMP dehydrogenase activity	5.53E-04
27	GO:0004766: spermidine synthase activity	5.53E-04
28	GO:0052689: carboxylic ester hydrolase activity	6.60E-04
29	GO:0004148: dihydrolipoyl dehydrogenase activity	8.99E-04
30	GO:0005504: fatty acid binding	8.99E-04
31	GO:0030267: glyoxylate reductase (NADP) activity	8.99E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.99E-04
33	GO:0016531: copper chaperone activity	8.99E-04
34	GO:0019829: cation-transporting ATPase activity	8.99E-04
35	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.28E-03
36	GO:0016851: magnesium chelatase activity	1.28E-03
37	GO:0016149: translation release factor activity, codon specific	1.28E-03
38	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.28E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.28E-03
40	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.28E-03
41	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.46E-03
42	GO:0052793: pectin acetylesterase activity	1.71E-03
43	GO:0045430: chalcone isomerase activity	1.71E-03
44	GO:0046527: glucosyltransferase activity	1.71E-03
45	GO:0016836: hydro-lyase activity	1.71E-03
46	GO:0005516: calmodulin binding	1.71E-03
47	GO:0008289: lipid binding	1.95E-03
48	GO:0003989: acetyl-CoA carboxylase activity	2.19E-03
49	GO:0016208: AMP binding	2.70E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.70E-03
51	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.24E-03
52	GO:0051920: peroxiredoxin activity	3.24E-03
53	GO:0005200: structural constituent of cytoskeleton	3.44E-03
54	GO:0019843: rRNA binding	3.52E-03
55	GO:0043295: glutathione binding	3.82E-03
56	GO:0004427: inorganic diphosphatase activity	3.82E-03
57	GO:0016209: antioxidant activity	4.44E-03
58	GO:0008312: 7S RNA binding	4.44E-03
59	GO:0003924: GTPase activity	4.76E-03
60	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.87E-03
61	GO:0005375: copper ion transmembrane transporter activity	5.08E-03
62	GO:0003747: translation release factor activity	5.75E-03
63	GO:0004337: geranyltranstransferase activity	5.75E-03
64	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.75E-03
65	GO:0004364: glutathione transferase activity	7.91E-03
66	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.96E-03
67	GO:0047372: acylglycerol lipase activity	7.96E-03
68	GO:0004161: dimethylallyltranstransferase activity	7.96E-03
69	GO:0016788: hydrolase activity, acting on ester bonds	9.47E-03
70	GO:0004565: beta-galactosidase activity	9.57E-03
71	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.57E-03
72	GO:0004022: alcohol dehydrogenase (NAD) activity	9.57E-03
73	GO:0004089: carbonate dehydratase activity	9.57E-03
74	GO:0005262: calcium channel activity	9.57E-03
75	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.62E-03
76	GO:0004674: protein serine/threonine kinase activity	1.12E-02
77	GO:0045330: aspartyl esterase activity	1.23E-02
78	GO:0005528: FK506 binding	1.31E-02
79	GO:0008324: cation transmembrane transporter activity	1.41E-02
80	GO:0030599: pectinesterase activity	1.50E-02
81	GO:0046983: protein dimerization activity	1.69E-02
82	GO:0016760: cellulose synthase (UDP-forming) activity	1.71E-02
83	GO:0016758: transferase activity, transferring hexosyl groups	1.94E-02
84	GO:0004672: protein kinase activity	1.99E-02
85	GO:0003713: transcription coactivator activity	2.14E-02
86	GO:0005525: GTP binding	2.40E-02
87	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.56E-02
88	GO:0000156: phosphorelay response regulator activity	2.72E-02
89	GO:0051015: actin filament binding	2.72E-02
90	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.97E-02
91	GO:0016597: amino acid binding	3.10E-02
92	GO:0016413: O-acetyltransferase activity	3.10E-02
93	GO:0015250: water channel activity	3.23E-02
94	GO:0030247: polysaccharide binding	3.62E-02
95	GO:0005096: GTPase activator activity	4.04E-02
96	GO:0004601: peroxidase activity	4.24E-02
97	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.32E-02
98	GO:0030145: manganese ion binding	4.32E-02
99	GO:0003993: acid phosphatase activity	4.76E-02
100	GO:0016491: oxidoreductase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0070971: endoplasmic reticulum exit site	0.00E+00
2	GO:0005835: fatty acid synthase complex	0.00E+00
3	GO:0031225: anchored component of membrane	8.00E-14
4	GO:0046658: anchored component of plasma membrane	1.06E-12
5	GO:0005886: plasma membrane	3.17E-08
6	GO:0009505: plant-type cell wall	4.85E-08
7	GO:0009570: chloroplast stroma	1.19E-07
8	GO:0005576: extracellular region	4.51E-06
9	GO:0005618: cell wall	4.78E-06
10	GO:0009941: chloroplast envelope	5.03E-05
11	GO:0048046: apoplast	2.40E-04
12	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.51E-04
13	GO:0080085: signal recognition particle, chloroplast targeting	5.53E-04
14	GO:0009317: acetyl-CoA carboxylase complex	8.99E-04
15	GO:0010007: magnesium chelatase complex	8.99E-04
16	GO:0032432: actin filament bundle	1.28E-03
17	GO:0009506: plasmodesma	2.17E-03
18	GO:0009507: chloroplast	2.97E-03
19	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.08E-03
20	GO:0000139: Golgi membrane	5.59E-03
21	GO:0045298: tubulin complex	5.75E-03
22	GO:0031977: thylakoid lumen	7.59E-03
23	GO:0005884: actin filament	7.96E-03
24	GO:0000311: plastid large ribosomal subunit	8.75E-03
25	GO:0030176: integral component of endoplasmic reticulum membrane	1.13E-02
26	GO:0043234: protein complex	1.22E-02
27	GO:0005875: microtubule associated complex	1.22E-02
28	GO:0031969: chloroplast membrane	1.22E-02
29	GO:0009536: plastid	1.46E-02
30	GO:0009579: thylakoid	1.49E-02
31	GO:0009534: chloroplast thylakoid	1.51E-02
32	GO:0009543: chloroplast thylakoid lumen	1.99E-02
33	GO:0019898: extrinsic component of membrane	2.36E-02
34	GO:0005768: endosome	2.79E-02
35	GO:0005778: peroxisomal membrane	2.97E-02
36	GO:0005773: vacuole	3.19E-02
37	GO:0000151: ubiquitin ligase complex	3.90E-02
38	GO:0005794: Golgi apparatus	4.93E-02