Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G14240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0034337: RNA folding0.00E+00
9GO:0061157: mRNA destabilization0.00E+00
10GO:0002184: cytoplasmic translational termination0.00E+00
11GO:0015995: chlorophyll biosynthetic process4.86E-08
12GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.83E-06
13GO:0006412: translation1.51E-05
14GO:0032544: plastid translation3.30E-05
15GO:0010206: photosystem II repair4.50E-05
16GO:0080170: hydrogen peroxide transmembrane transport7.03E-05
17GO:0006546: glycine catabolic process1.23E-04
18GO:0010027: thylakoid membrane organization1.86E-04
19GO:0006655: phosphatidylglycerol biosynthetic process2.68E-04
20GO:0042549: photosystem II stabilization2.68E-04
21GO:0009735: response to cytokinin3.38E-04
22GO:0009772: photosynthetic electron transport in photosystem II4.62E-04
23GO:0000476: maturation of 4.5S rRNA4.64E-04
24GO:0000967: rRNA 5'-end processing4.64E-04
25GO:0070509: calcium ion import4.64E-04
26GO:0007263: nitric oxide mediated signal transduction4.64E-04
27GO:0043266: regulation of potassium ion transport4.64E-04
28GO:0010480: microsporocyte differentiation4.64E-04
29GO:0000481: maturation of 5S rRNA4.64E-04
30GO:0042547: cell wall modification involved in multidimensional cell growth4.64E-04
31GO:2000021: regulation of ion homeostasis4.64E-04
32GO:0034628: 'de novo' NAD biosynthetic process from aspartate4.64E-04
33GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.64E-04
34GO:0034220: ion transmembrane transport6.16E-04
35GO:1900865: chloroplast RNA modification9.90E-04
36GO:1900871: chloroplast mRNA modification1.00E-03
37GO:0001736: establishment of planar polarity1.00E-03
38GO:0006521: regulation of cellular amino acid metabolic process1.00E-03
39GO:0034470: ncRNA processing1.00E-03
40GO:0010275: NAD(P)H dehydrogenase complex assembly1.00E-03
41GO:0006782: protoporphyrinogen IX biosynthetic process1.15E-03
42GO:0016024: CDP-diacylglycerol biosynthetic process1.52E-03
43GO:0006518: peptide metabolic process1.63E-03
44GO:0006013: mannose metabolic process1.63E-03
45GO:0051176: positive regulation of sulfur metabolic process1.63E-03
46GO:0045493: xylan catabolic process1.63E-03
47GO:2001295: malonyl-CoA biosynthetic process1.63E-03
48GO:0009767: photosynthetic electron transport chain1.73E-03
49GO:0008152: metabolic process1.84E-03
50GO:0009658: chloroplast organization1.89E-03
51GO:0042254: ribosome biogenesis1.96E-03
52GO:0034059: response to anoxia2.37E-03
53GO:0009226: nucleotide-sugar biosynthetic process2.37E-03
54GO:0006424: glutamyl-tRNA aminoacylation2.37E-03
55GO:0051016: barbed-end actin filament capping2.37E-03
56GO:0055070: copper ion homeostasis2.37E-03
57GO:0016556: mRNA modification2.37E-03
58GO:2001141: regulation of RNA biosynthetic process2.37E-03
59GO:0006833: water transport2.44E-03
60GO:0009793: embryo development ending in seed dormancy2.72E-03
61GO:0007017: microtubule-based process2.99E-03
62GO:0019464: glycine decarboxylation via glycine cleavage system3.18E-03
63GO:0045727: positive regulation of translation3.18E-03
64GO:0030104: water homeostasis3.18E-03
65GO:0015994: chlorophyll metabolic process3.18E-03
66GO:0006633: fatty acid biosynthetic process3.42E-03
67GO:0006465: signal peptide processing4.08E-03
68GO:0000304: response to singlet oxygen4.08E-03
69GO:0009247: glycolipid biosynthetic process4.08E-03
70GO:0032543: mitochondrial translation4.08E-03
71GO:0035434: copper ion transmembrane transport4.08E-03
72GO:0009435: NAD biosynthetic process4.08E-03
73GO:0000413: protein peptidyl-prolyl isomerization5.00E-03
74GO:0000470: maturation of LSU-rRNA5.05E-03
75GO:1902456: regulation of stomatal opening5.05E-03
76GO:0016554: cytidine to uridine editing5.05E-03
77GO:0010190: cytochrome b6f complex assembly5.05E-03
78GO:0032973: amino acid export5.05E-03
79GO:0018258: protein O-linked glycosylation via hydroxyproline5.05E-03
80GO:0000741: karyogamy5.05E-03
81GO:0010405: arabinogalactan protein metabolic process5.05E-03
82GO:0006751: glutathione catabolic process5.05E-03
83GO:0010256: endomembrane system organization5.05E-03
84GO:0009958: positive gravitropism5.39E-03
85GO:0006810: transport5.82E-03
86GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.09E-03
87GO:0006694: steroid biosynthetic process6.09E-03
88GO:1901259: chloroplast rRNA processing6.09E-03
89GO:0006096: glycolytic process6.70E-03
90GO:0051693: actin filament capping7.20E-03
91GO:0048437: floral organ development7.20E-03
92GO:0010196: nonphotochemical quenching7.20E-03
93GO:0010444: guard mother cell differentiation7.20E-03
94GO:0051510: regulation of unidimensional cell growth7.20E-03
95GO:0043090: amino acid import7.20E-03
96GO:0030163: protein catabolic process7.60E-03
97GO:0019375: galactolipid biosynthetic process8.39E-03
98GO:0032508: DNA duplex unwinding8.39E-03
99GO:0010492: maintenance of shoot apical meristem identity8.39E-03
100GO:0071482: cellular response to light stimulus9.63E-03
101GO:0006526: arginine biosynthetic process9.63E-03
102GO:0017004: cytochrome complex assembly9.63E-03
103GO:0009808: lignin metabolic process9.63E-03
104GO:0009932: cell tip growth9.63E-03
105GO:0042128: nitrate assimilation1.08E-02
106GO:0046685: response to arsenic-containing substance1.09E-02
107GO:0080144: amino acid homeostasis1.09E-02
108GO:0006098: pentose-phosphate shunt1.09E-02
109GO:0006783: heme biosynthetic process1.09E-02
110GO:0048507: meristem development1.09E-02
111GO:0000373: Group II intron splicing1.09E-02
112GO:0009060: aerobic respiration1.09E-02
113GO:0000902: cell morphogenesis1.09E-02
114GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.12E-02
115GO:0010205: photoinhibition1.23E-02
116GO:0009638: phototropism1.23E-02
117GO:0006779: porphyrin-containing compound biosynthetic process1.23E-02
118GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process1.23E-02
119GO:0043069: negative regulation of programmed cell death1.37E-02
120GO:0048829: root cap development1.37E-02
121GO:0009790: embryo development1.38E-02
122GO:0009073: aromatic amino acid family biosynthetic process1.52E-02
123GO:0009773: photosynthetic electron transport in photosystem I1.52E-02
124GO:0006352: DNA-templated transcription, initiation1.52E-02
125GO:0006415: translational termination1.52E-02
126GO:0009807: lignan biosynthetic process1.52E-02
127GO:0018119: peptidyl-cysteine S-nitrosylation1.52E-02
128GO:0048229: gametophyte development1.52E-02
129GO:0048765: root hair cell differentiation1.52E-02
130GO:0006865: amino acid transport1.54E-02
131GO:0012501: programmed cell death1.68E-02
132GO:0006820: anion transport1.68E-02
133GO:0046686: response to cadmium ion1.73E-02
134GO:0009451: RNA modification1.76E-02
135GO:0030001: metal ion transport1.84E-02
136GO:0030048: actin filament-based movement1.84E-02
137GO:0030036: actin cytoskeleton organization1.84E-02
138GO:0050826: response to freezing1.84E-02
139GO:0009718: anthocyanin-containing compound biosynthetic process1.84E-02
140GO:0010075: regulation of meristem growth1.84E-02
141GO:0006094: gluconeogenesis1.84E-02
142GO:0010207: photosystem II assembly2.00E-02
143GO:0007015: actin filament organization2.00E-02
144GO:0009934: regulation of meristem structural organization2.00E-02
145GO:0010114: response to red light2.08E-02
146GO:0010030: positive regulation of seed germination2.17E-02
147GO:0006636: unsaturated fatty acid biosynthetic process2.35E-02
148GO:0007010: cytoskeleton organization2.53E-02
149GO:0009664: plant-type cell wall organization2.61E-02
150GO:0016575: histone deacetylation2.71E-02
151GO:0006418: tRNA aminoacylation for protein translation2.71E-02
152GO:0009826: unidimensional cell growth2.82E-02
153GO:0061077: chaperone-mediated protein folding2.90E-02
154GO:0031408: oxylipin biosynthetic process2.90E-02
155GO:0051603: proteolysis involved in cellular protein catabolic process2.90E-02
156GO:0003333: amino acid transmembrane transport2.90E-02
157GO:0010017: red or far-red light signaling pathway3.09E-02
158GO:0009814: defense response, incompatible interaction3.09E-02
159GO:0016226: iron-sulfur cluster assembly3.09E-02
160GO:0006012: galactose metabolic process3.29E-02
161GO:0055114: oxidation-reduction process3.34E-02
162GO:0009306: protein secretion3.49E-02
163GO:0009723: response to ethylene3.55E-02
164GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.70E-02
165GO:0042631: cellular response to water deprivation3.91E-02
166GO:0042391: regulation of membrane potential3.91E-02
167GO:0048653: anther development3.91E-02
168GO:0009624: response to nematode3.98E-02
169GO:0005975: carbohydrate metabolic process4.04E-02
170GO:0006520: cellular amino acid metabolic process4.12E-02
171GO:0010197: polar nucleus fusion4.12E-02
172GO:0048868: pollen tube development4.12E-02
173GO:0009741: response to brassinosteroid4.12E-02
174GO:0007018: microtubule-based movement4.34E-02
175GO:0009416: response to light stimulus4.44E-02
176GO:0015979: photosynthesis4.54E-02
177GO:0009791: post-embryonic development4.56E-02
178GO:0080156: mitochondrial mRNA modification4.78E-02
179GO:0000302: response to reactive oxygen species4.78E-02
180GO:0002229: defense response to oomycetes4.78E-02
181GO:0016132: brassinosteroid biosynthetic process4.78E-02
182GO:0045454: cell redox homeostasis4.81E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0008987: quinolinate synthetase A activity0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0050614: delta24-sterol reductase activity0.00E+00
13GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
14GO:0019843: rRNA binding9.76E-15
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.87E-08
16GO:0005528: FK506 binding4.68E-07
17GO:0003735: structural constituent of ribosome7.05E-07
18GO:0016851: magnesium chelatase activity7.03E-05
19GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.23E-04
20GO:0008200: ion channel inhibitor activity2.68E-04
21GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.64E-04
22GO:0080132: fatty acid alpha-hydroxylase activity4.64E-04
23GO:0003867: 4-aminobutyrate transaminase activity4.64E-04
24GO:0004853: uroporphyrinogen decarboxylase activity4.64E-04
25GO:0045485: omega-6 fatty acid desaturase activity4.64E-04
26GO:0005221: intracellular cyclic nucleotide activated cation channel activity4.64E-04
27GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.64E-04
28GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.00E-03
29GO:0004802: transketolase activity1.00E-03
30GO:0015929: hexosaminidase activity1.00E-03
31GO:0004563: beta-N-acetylhexosaminidase activity1.00E-03
32GO:0008967: phosphoglycolate phosphatase activity1.00E-03
33GO:0010283: pinoresinol reductase activity1.00E-03
34GO:0047746: chlorophyllase activity1.00E-03
35GO:0016868: intramolecular transferase activity, phosphotransferases1.00E-03
36GO:0003839: gamma-glutamylcyclotransferase activity1.00E-03
37GO:0004047: aminomethyltransferase activity1.00E-03
38GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.00E-03
39GO:0016597: amino acid binding1.31E-03
40GO:0015250: water channel activity1.40E-03
41GO:0016531: copper chaperone activity1.63E-03
42GO:0019829: cation-transporting ATPase activity1.63E-03
43GO:0002161: aminoacyl-tRNA editing activity1.63E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.63E-03
45GO:0004075: biotin carboxylase activity1.63E-03
46GO:0030267: glyoxylate reductase (NADP) activity1.63E-03
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.63E-03
48GO:0004519: endonuclease activity1.79E-03
49GO:0008266: poly(U) RNA binding1.95E-03
50GO:0004222: metalloendopeptidase activity2.24E-03
51GO:0004375: glycine dehydrogenase (decarboxylating) activity2.37E-03
52GO:0035250: UDP-galactosyltransferase activity2.37E-03
53GO:0048487: beta-tubulin binding2.37E-03
54GO:0016149: translation release factor activity, codon specific2.37E-03
55GO:0043023: ribosomal large subunit binding2.37E-03
56GO:0001872: (1->3)-beta-D-glucan binding2.37E-03
57GO:0016987: sigma factor activity3.18E-03
58GO:0010328: auxin influx transmembrane transporter activity3.18E-03
59GO:0009044: xylan 1,4-beta-xylosidase activity3.18E-03
60GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.18E-03
61GO:0046556: alpha-L-arabinofuranosidase activity3.18E-03
62GO:0001053: plastid sigma factor activity3.18E-03
63GO:0010011: auxin binding3.18E-03
64GO:0016836: hydro-lyase activity3.18E-03
65GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.18E-03
66GO:0003723: RNA binding3.82E-03
67GO:0030570: pectate lyase activity3.92E-03
68GO:0003959: NADPH dehydrogenase activity4.08E-03
69GO:0003989: acetyl-CoA carboxylase activity4.08E-03
70GO:0008381: mechanically-gated ion channel activity4.08E-03
71GO:0004332: fructose-bisphosphate aldolase activity5.05E-03
72GO:0004130: cytochrome-c peroxidase activity5.05E-03
73GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.05E-03
74GO:0042578: phosphoric ester hydrolase activity5.05E-03
75GO:1990714: hydroxyproline O-galactosyltransferase activity5.05E-03
76GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.09E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.09E-03
78GO:0005261: cation channel activity6.09E-03
79GO:0004559: alpha-mannosidase activity6.09E-03
80GO:0005242: inward rectifier potassium channel activity6.09E-03
81GO:0051920: peroxiredoxin activity6.09E-03
82GO:0015171: amino acid transmembrane transporter activity6.16E-03
83GO:0004034: aldose 1-epimerase activity8.39E-03
84GO:0004033: aldo-keto reductase (NADP) activity8.39E-03
85GO:0016209: antioxidant activity8.39E-03
86GO:0005200: structural constituent of cytoskeleton8.60E-03
87GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.63E-03
88GO:0005375: copper ion transmembrane transporter activity9.63E-03
89GO:0003747: translation release factor activity1.09E-02
90GO:0008236: serine-type peptidase activity1.20E-02
91GO:0005096: GTPase activator activity1.33E-02
92GO:0008047: enzyme activator activity1.37E-02
93GO:0016787: hydrolase activity1.40E-02
94GO:0047372: acylglycerol lipase activity1.52E-02
95GO:0000049: tRNA binding1.68E-02
96GO:0003993: acid phosphatase activity1.68E-02
97GO:0008378: galactosyltransferase activity1.68E-02
98GO:0004565: beta-galactosidase activity1.84E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity1.84E-02
100GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.84E-02
101GO:0031072: heat shock protein binding1.84E-02
102GO:0005262: calcium channel activity1.84E-02
103GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.00E-02
104GO:0003774: motor activity2.00E-02
105GO:0004185: serine-type carboxypeptidase activity2.08E-02
106GO:0030553: cGMP binding2.17E-02
107GO:0004190: aspartic-type endopeptidase activity2.17E-02
108GO:0030552: cAMP binding2.17E-02
109GO:0051537: 2 iron, 2 sulfur cluster binding2.25E-02
110GO:0015293: symporter activity2.34E-02
111GO:0051287: NAD binding2.52E-02
112GO:0004407: histone deacetylase activity2.53E-02
113GO:0043424: protein histidine kinase binding2.71E-02
114GO:0005216: ion channel activity2.71E-02
115GO:0015079: potassium ion transmembrane transporter activity2.71E-02
116GO:0033612: receptor serine/threonine kinase binding2.90E-02
117GO:0016491: oxidoreductase activity3.11E-02
118GO:0003756: protein disulfide isomerase activity3.49E-02
119GO:0003727: single-stranded RNA binding3.49E-02
120GO:0004812: aminoacyl-tRNA ligase activity3.70E-02
121GO:0030551: cyclic nucleotide binding3.91E-02
122GO:0050662: coenzyme binding4.34E-02
123GO:0010181: FMN binding4.34E-02
124GO:0016853: isomerase activity4.34E-02
125GO:0048038: quinone binding4.78E-02
126GO:0016758: transferase activity, transferring hexosyl groups4.84E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast6.09E-43
2GO:0009570: chloroplast stroma4.57E-29
3GO:0009534: chloroplast thylakoid2.97E-23
4GO:0009941: chloroplast envelope1.60E-21
5GO:0009535: chloroplast thylakoid membrane4.12E-16
6GO:0009543: chloroplast thylakoid lumen9.76E-15
7GO:0009579: thylakoid1.27E-12
8GO:0031977: thylakoid lumen1.45E-08
9GO:0005840: ribosome5.07E-07
10GO:0010007: magnesium chelatase complex3.26E-05
11GO:0000311: plastid large ribosomal subunit1.18E-04
12GO:0046658: anchored component of plasma membrane3.26E-04
13GO:0009533: chloroplast stromal thylakoid4.62E-04
14GO:0043674: columella4.64E-04
15GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.64E-04
16GO:0009344: nitrite reductase complex [NAD(P)H]4.64E-04
17GO:0009547: plastid ribosome4.64E-04
18GO:0009536: plastid4.64E-04
19GO:0009505: plant-type cell wall4.94E-04
20GO:0016020: membrane8.27E-04
21GO:0045298: tubulin complex8.40E-04
22GO:0008290: F-actin capping protein complex1.00E-03
23GO:0032040: small-subunit processome1.52E-03
24GO:0005960: glycine cleavage complex2.37E-03
25GO:0009531: secondary cell wall2.37E-03
26GO:0031969: chloroplast membrane2.77E-03
27GO:0009654: photosystem II oxygen evolving complex2.99E-03
28GO:0005886: plasma membrane5.24E-03
29GO:0019898: extrinsic component of membrane6.23E-03
30GO:0043231: intracellular membrane-bounded organelle6.53E-03
31GO:0042807: central vacuole7.20E-03
32GO:0009986: cell surface7.20E-03
33GO:0048046: apoplast9.24E-03
34GO:0005874: microtubule1.01E-02
35GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.09E-02
36GO:0031225: anchored component of membrane1.13E-02
37GO:0005618: cell wall1.16E-02
38GO:0016459: myosin complex1.37E-02
39GO:0005884: actin filament1.52E-02
40GO:0009705: plant-type vacuole membrane1.71E-02
41GO:0030095: chloroplast photosystem II2.00E-02
42GO:0000312: plastid small ribosomal subunit2.00E-02
43GO:0043234: protein complex2.35E-02
44GO:0042651: thylakoid membrane2.71E-02
45GO:0015935: small ribosomal subunit2.90E-02
46GO:0005887: integral component of plasma membrane3.01E-02
47GO:0005871: kinesin complex3.70E-02
48GO:0009706: chloroplast inner membrane3.98E-02
49GO:0009523: photosystem II4.56E-02
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Gene type



Gene DE type