co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0006482: protein demethylation	0.00E+00
3	GO:1900103: positive regulation of endoplasmic reticulum unfolded protein response	0.00E+00
4	GO:0048227: plasma membrane to endosome transport	0.00E+00
5	GO:0006886: intracellular protein transport	1.87E-07
6	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.77E-05
7	GO:0006680: glucosylceramide catabolic process	9.14E-05
8	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	9.14E-05
9	GO:0046167: glycerol-3-phosphate biosynthetic process	9.14E-05
10	GO:0000303: response to superoxide	9.14E-05
11	GO:0009962: regulation of flavonoid biosynthetic process	9.14E-05
12	GO:0000266: mitochondrial fission	1.54E-04
13	GO:1902000: homogentisate catabolic process	2.16E-04
14	GO:0097054: L-glutamate biosynthetic process	2.16E-04
15	GO:0006641: triglyceride metabolic process	2.16E-04
16	GO:0019374: galactolipid metabolic process	2.16E-04
17	GO:0030010: establishment of cell polarity	2.16E-04
18	GO:0019563: glycerol catabolic process	3.61E-04
19	GO:0010359: regulation of anion channel activity	3.61E-04
20	GO:0009072: aromatic amino acid family metabolic process	3.61E-04
21	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	3.61E-04
22	GO:0006556: S-adenosylmethionine biosynthetic process	3.61E-04
23	GO:0006952: defense response	4.93E-04
24	GO:0001676: long-chain fatty acid metabolic process	5.20E-04
25	GO:0048194: Golgi vesicle budding	5.20E-04
26	GO:0070301: cellular response to hydrogen peroxide	5.20E-04
27	GO:0006072: glycerol-3-phosphate metabolic process	5.20E-04
28	GO:0006809: nitric oxide biosynthetic process	5.20E-04
29	GO:0009399: nitrogen fixation	5.20E-04
30	GO:0006537: glutamate biosynthetic process	5.20E-04
31	GO:0006623: protein targeting to vacuole	6.49E-04
32	GO:0010188: response to microbial phytotoxin	6.90E-04
33	GO:0006542: glutamine biosynthetic process	6.90E-04
34	GO:0019676: ammonia assimilation cycle	6.90E-04
35	GO:0006891: intra-Golgi vesicle-mediated transport	6.93E-04
36	GO:0010193: response to ozone	6.93E-04
37	GO:0007264: small GTPase mediated signal transduction	7.39E-04
38	GO:0042742: defense response to bacterium	8.63E-04
39	GO:0031365: N-terminal protein amino acid modification	8.73E-04
40	GO:1900425: negative regulation of defense response to bacterium	1.07E-03
41	GO:0009117: nucleotide metabolic process	1.07E-03
42	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.07E-03
43	GO:1902456: regulation of stomatal opening	1.07E-03
44	GO:0010555: response to mannitol	1.27E-03
45	GO:2000067: regulation of root morphogenesis	1.27E-03
46	GO:0015031: protein transport	1.31E-03
47	GO:0009610: response to symbiotic fungus	1.49E-03
48	GO:0016559: peroxisome fission	1.72E-03
49	GO:0006644: phospholipid metabolic process	1.72E-03
50	GO:0006897: endocytosis	1.89E-03
51	GO:0006631: fatty acid metabolic process	1.89E-03
52	GO:0009880: embryonic pattern specification	1.96E-03
53	GO:0007186: G-protein coupled receptor signaling pathway	1.96E-03
54	GO:0090333: regulation of stomatal closure	2.21E-03
55	GO:0046777: protein autophosphorylation	2.22E-03
56	GO:0006855: drug transmembrane transport	2.38E-03
57	GO:0048268: clathrin coat assembly	2.48E-03
58	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.48E-03
59	GO:0042761: very long-chain fatty acid biosynthetic process	2.48E-03
60	GO:0006896: Golgi to vacuole transport	2.75E-03
61	GO:0009750: response to fructose	3.03E-03
62	GO:0048229: gametophyte development	3.03E-03
63	GO:0030148: sphingolipid biosynthetic process	3.03E-03
64	GO:0012501: programmed cell death	3.32E-03
65	GO:0055046: microgametogenesis	3.63E-03
66	GO:0010102: lateral root morphogenesis	3.63E-03
67	GO:0002237: response to molecule of bacterial origin	3.93E-03
68	GO:0034976: response to endoplasmic reticulum stress	4.58E-03
69	GO:2000377: regulation of reactive oxygen species metabolic process	4.92E-03
70	GO:0061077: chaperone-mediated protein folding	5.62E-03
71	GO:0009790: embryo development	5.67E-03
72	GO:0007005: mitochondrion organization	5.98E-03
73	GO:0006730: one-carbon metabolic process	5.98E-03
74	GO:0009814: defense response, incompatible interaction	5.98E-03
75	GO:0009693: ethylene biosynthetic process	6.35E-03
76	GO:0009561: megagametogenesis	6.73E-03
77	GO:0042147: retrograde transport, endosome to Golgi	7.11E-03
78	GO:0070417: cellular response to cold	7.11E-03
79	GO:0010118: stomatal movement	7.51E-03
80	GO:0042631: cellular response to water deprivation	7.51E-03
81	GO:0007166: cell surface receptor signaling pathway	7.66E-03
82	GO:0010197: polar nucleus fusion	7.91E-03
83	GO:0071472: cellular response to salt stress	7.91E-03
84	GO:0009617: response to bacterium	8.00E-03
85	GO:0009749: response to glucose	8.74E-03
86	GO:0071554: cell wall organization or biogenesis	9.16E-03
87	GO:0002229: defense response to oomycetes	9.16E-03
88	GO:0016032: viral process	9.60E-03
89	GO:0071281: cellular response to iron ion	1.00E-02
90	GO:0006468: protein phosphorylation	1.04E-02
91	GO:0007275: multicellular organism development	1.08E-02
92	GO:0006970: response to osmotic stress	1.12E-02
93	GO:0009911: positive regulation of flower development	1.19E-02
94	GO:0009816: defense response to bacterium, incompatible interaction	1.23E-02
95	GO:0042128: nitrate assimilation	1.28E-02
96	GO:0048573: photoperiodism, flowering	1.33E-02
97	GO:0010200: response to chitin	1.33E-02
98	GO:0006888: ER to Golgi vesicle-mediated transport	1.33E-02
99	GO:0048481: plant ovule development	1.43E-02
100	GO:0016310: phosphorylation	1.51E-02
101	GO:0045454: cell redox homeostasis	1.54E-02
102	GO:0006499: N-terminal protein myristoylation	1.54E-02
103	GO:0009407: toxin catabolic process	1.54E-02
104	GO:0048527: lateral root development	1.59E-02
105	GO:0010119: regulation of stomatal movement	1.59E-02
106	GO:0009867: jasmonic acid mediated signaling pathway	1.69E-02
107	GO:0009744: response to sucrose	2.03E-02
108	GO:0051707: response to other organism	2.03E-02
109	GO:0000209: protein polyubiquitination	2.09E-02
110	GO:0009644: response to high light intensity	2.14E-02
111	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.32E-02
112	GO:0009846: pollen germination	2.38E-02
113	GO:0042538: hyperosmotic salinity response	2.38E-02
114	GO:0009651: response to salt stress	2.41E-02
115	GO:0009736: cytokinin-activated signaling pathway	2.51E-02
116	GO:0051603: proteolysis involved in cellular protein catabolic process	2.57E-02
117	GO:0009626: plant-type hypersensitive response	2.96E-02
118	GO:0009624: response to nematode	3.22E-02
119	GO:0009738: abscisic acid-activated signaling pathway	3.27E-02
120	GO:0018105: peptidyl-serine phosphorylation	3.29E-02
121	GO:0006396: RNA processing	3.29E-02
122	GO:0051726: regulation of cell cycle	3.36E-02
123	GO:0000398: mRNA splicing, via spliceosome	3.57E-02
124	GO:0045893: positive regulation of transcription, DNA-templated	3.88E-02
125	GO:0009737: response to abscisic acid	4.33E-02
126	GO:0006457: protein folding	4.36E-02
127	GO:0006633: fatty acid biosynthetic process	4.45E-02
128	GO:0040008: regulation of growth	4.60E-02
129	GO:0010150: leaf senescence	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0004370: glycerol kinase activity	0.00E+00
2	GO:0051723: protein methylesterase activity	0.00E+00
3	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
4	GO:0015930: glutamate synthase activity	0.00E+00
5	GO:0005524: ATP binding	8.84E-08
6	GO:0005093: Rab GDP-dissociation inhibitor activity	1.70E-06
7	GO:0102391: decanoate--CoA ligase activity	2.78E-05
8	GO:0004467: long-chain fatty acid-CoA ligase activity	3.77E-05
9	GO:0004143: diacylglycerol kinase activity	3.77E-05
10	GO:0008235: metalloexopeptidase activity	3.77E-05
11	GO:0003951: NAD+ kinase activity	6.27E-05
12	GO:0004348: glucosylceramidase activity	9.14E-05
13	GO:0016041: glutamate synthase (ferredoxin) activity	9.14E-05
14	GO:0004177: aminopeptidase activity	1.33E-04
15	GO:0019200: carbohydrate kinase activity	2.16E-04
16	GO:0004385: guanylate kinase activity	2.16E-04
17	GO:0008517: folic acid transporter activity	2.16E-04
18	GO:0045140: inositol phosphoceramide synthase activity	2.16E-04
19	GO:0016805: dipeptidase activity	3.61E-04
20	GO:0004478: methionine adenosyltransferase activity	3.61E-04
21	GO:0001664: G-protein coupled receptor binding	3.61E-04
22	GO:0031683: G-protein beta/gamma-subunit complex binding	3.61E-04
23	GO:0004416: hydroxyacylglutathione hydrolase activity	5.20E-04
24	GO:0008565: protein transporter activity	7.59E-04
25	GO:0051538: 3 iron, 4 sulfur cluster binding	8.73E-04
26	GO:0004356: glutamate-ammonia ligase activity	8.73E-04
27	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.27E-03
28	GO:0004012: phospholipid-translocating ATPase activity	1.27E-03
29	GO:0005096: GTPase activator activity	1.33E-03
30	GO:0004620: phospholipase activity	1.49E-03
31	GO:0005515: protein binding	1.89E-03
32	GO:0047617: acyl-CoA hydrolase activity	2.48E-03
33	GO:0005545: 1-phosphatidylinositol binding	2.75E-03
34	GO:0004713: protein tyrosine kinase activity	2.75E-03
35	GO:0008559: xenobiotic-transporting ATPase activity	3.03E-03
36	GO:0008794: arsenate reductase (glutaredoxin) activity	3.03E-03
37	GO:0031072: heat shock protein binding	3.63E-03
38	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.63E-03
39	GO:0004190: aspartic-type endopeptidase activity	4.26E-03
40	GO:0003954: NADH dehydrogenase activity	4.92E-03
41	GO:0005528: FK506 binding	4.92E-03
42	GO:0043424: protein histidine kinase binding	5.27E-03
43	GO:0003756: protein disulfide isomerase activity	6.73E-03
44	GO:0030276: clathrin binding	7.91E-03
45	GO:0001085: RNA polymerase II transcription factor binding	7.91E-03
46	GO:0016853: isomerase activity	8.32E-03
47	GO:0030246: carbohydrate binding	1.01E-02
48	GO:0043531: ADP binding	1.14E-02
49	GO:0016413: O-acetyltransferase activity	1.14E-02
50	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.28E-02
51	GO:0004683: calmodulin-dependent protein kinase activity	1.33E-02
52	GO:0004674: protein serine/threonine kinase activity	1.39E-02
53	GO:0015238: drug transmembrane transporter activity	1.48E-02
54	GO:0005509: calcium ion binding	1.52E-02
55	GO:0030145: manganese ion binding	1.59E-02
56	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.59E-02
57	GO:0004871: signal transducer activity	1.62E-02
58	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.80E-02
59	GO:0016301: kinase activity	1.80E-02
60	GO:0003924: GTPase activity	1.91E-02
61	GO:0004364: glutathione transferase activity	1.97E-02
62	GO:0043621: protein self-association	2.14E-02
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.26E-02
64	GO:0008289: lipid binding	2.65E-02
65	GO:0051082: unfolded protein binding	3.22E-02
66	GO:0015035: protein disulfide oxidoreductase activity	3.29E-02
67	GO:0016740: transferase activity	4.12E-02
68	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.15E-02
69	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.52E-02
70	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.55E-02
71	GO:0015297: antiporter activity	4.60E-02
72	GO:0008017: microtubule binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.31E-07
2	GO:0005829: cytosol	4.68E-05
3	GO:0017119: Golgi transport complex	1.13E-04
4	GO:0031304: intrinsic component of mitochondrial inner membrane	2.16E-04
5	GO:0005795: Golgi stack	2.28E-04
6	GO:0005905: clathrin-coated pit	3.47E-04
7	GO:0005794: Golgi apparatus	3.78E-04
8	GO:0030136: clathrin-coated vesicle	4.87E-04
9	GO:0030127: COPII vesicle coat	1.07E-03
10	GO:0030904: retromer complex	1.07E-03
11	GO:0016363: nuclear matrix	1.27E-03
12	GO:0030131: clathrin adaptor complex	1.72E-03
13	GO:0031902: late endosome membrane	1.89E-03
14	GO:0016021: integral component of membrane	1.89E-03
15	GO:0030665: clathrin-coated vesicle membrane	2.48E-03
16	GO:0005802: trans-Golgi network	2.72E-03
17	GO:0030125: clathrin vesicle coat	2.75E-03
18	GO:0005834: heterotrimeric G-protein complex	3.45E-03
19	GO:0005741: mitochondrial outer membrane	5.62E-03
20	GO:0000139: Golgi membrane	6.15E-03
21	GO:0005789: endoplasmic reticulum membrane	7.39E-03
22	GO:0005777: peroxisome	8.22E-03
23	GO:0009506: plasmodesma	1.09E-02
24	GO:0005778: peroxisomal membrane	1.09E-02
25	GO:0030529: intracellular ribonucleoprotein complex	1.19E-02
26	GO:0005788: endoplasmic reticulum lumen	1.23E-02
27	GO:0005667: transcription factor complex	1.28E-02
28	GO:0005622: intracellular	1.43E-02
29	GO:0000325: plant-type vacuole	1.59E-02
30	GO:0005783: endoplasmic reticulum	2.51E-02
31	GO:0005774: vacuolar membrane	2.52E-02
32	GO:0005887: integral component of plasma membrane	2.59E-02
33	GO:0005623: cell	3.85E-02
34	GO:0009524: phragmoplast	3.93E-02
35	GO:0005773: vacuole	4.69E-02