GO Enrichment Analysis of Co-expressed Genes with
AT3G13180
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0042407: cristae formation | 0.00E+00 |
| 5 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 6 | GO:0006353: DNA-templated transcription, termination | 5.10E-08 |
| 7 | GO:0018026: peptidyl-lysine monomethylation | 9.28E-08 |
| 8 | GO:0009443: pyridoxal 5'-phosphate salvage | 3.77E-05 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.77E-05 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 3.77E-05 |
| 11 | GO:0006438: valyl-tRNA aminoacylation | 3.77E-05 |
| 12 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 9.40E-05 |
| 13 | GO:0006423: cysteinyl-tRNA aminoacylation | 9.40E-05 |
| 14 | GO:0006954: inflammatory response | 1.63E-04 |
| 15 | GO:0006518: peptide metabolic process | 1.63E-04 |
| 16 | GO:0010239: chloroplast mRNA processing | 2.40E-04 |
| 17 | GO:0016556: mRNA modification | 2.40E-04 |
| 18 | GO:0010027: thylakoid membrane organization | 3.23E-04 |
| 19 | GO:0009658: chloroplast organization | 3.64E-04 |
| 20 | GO:0006655: phosphatidylglycerol biosynthetic process | 5.07E-04 |
| 21 | GO:0042793: transcription from plastid promoter | 5.07E-04 |
| 22 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 5.07E-04 |
| 23 | GO:0015979: photosynthesis | 5.66E-04 |
| 24 | GO:1901259: chloroplast rRNA processing | 6.05E-04 |
| 25 | GO:0042255: ribosome assembly | 8.13E-04 |
| 26 | GO:0009657: plastid organization | 9.23E-04 |
| 27 | GO:0043067: regulation of programmed cell death | 1.15E-03 |
| 28 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.15E-03 |
| 29 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.28E-03 |
| 30 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.40E-03 |
| 31 | GO:0009073: aromatic amino acid family biosynthetic process | 1.40E-03 |
| 32 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.53E-03 |
| 33 | GO:0009790: embryo development | 1.81E-03 |
| 34 | GO:0009793: embryo development ending in seed dormancy | 2.33E-03 |
| 35 | GO:0006418: tRNA aminoacylation for protein translation | 2.40E-03 |
| 36 | GO:0016114: terpenoid biosynthetic process | 2.56E-03 |
| 37 | GO:0016117: carotenoid biosynthetic process | 3.22E-03 |
| 38 | GO:0042254: ribosome biogenesis | 3.33E-03 |
| 39 | GO:0008033: tRNA processing | 3.40E-03 |
| 40 | GO:0010197: polar nucleus fusion | 3.58E-03 |
| 41 | GO:0032502: developmental process | 4.32E-03 |
| 42 | GO:0015995: chlorophyll biosynthetic process | 5.94E-03 |
| 43 | GO:0018298: protein-chromophore linkage | 6.38E-03 |
| 44 | GO:0051707: response to other organism | 8.96E-03 |
| 45 | GO:0009416: response to light stimulus | 1.06E-02 |
| 46 | GO:0006364: rRNA processing | 1.11E-02 |
| 47 | GO:0006457: protein folding | 1.37E-02 |
| 48 | GO:0006508: proteolysis | 1.60E-02 |
| 49 | GO:0008380: RNA splicing | 2.37E-02 |
| 50 | GO:0015031: protein transport | 2.73E-02 |
| 51 | GO:0006412: translation | 3.10E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 4 | GO:0070402: NADPH binding | 3.60E-07 |
| 5 | GO:0016279: protein-lysine N-methyltransferase activity | 1.70E-06 |
| 6 | GO:0004832: valine-tRNA ligase activity | 3.77E-05 |
| 7 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.77E-05 |
| 8 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 3.77E-05 |
| 9 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 3.77E-05 |
| 10 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 9.40E-05 |
| 11 | GO:0004817: cysteine-tRNA ligase activity | 9.40E-05 |
| 12 | GO:0019843: rRNA binding | 1.30E-04 |
| 13 | GO:0003723: RNA binding | 2.40E-04 |
| 14 | GO:0008097: 5S rRNA binding | 2.40E-04 |
| 15 | GO:0016851: magnesium chelatase activity | 2.40E-04 |
| 16 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 3.24E-04 |
| 17 | GO:0043495: protein anchor | 3.24E-04 |
| 18 | GO:0004040: amidase activity | 4.13E-04 |
| 19 | GO:0019899: enzyme binding | 7.07E-04 |
| 20 | GO:0004033: aldo-keto reductase (NADP) activity | 8.13E-04 |
| 21 | GO:0003729: mRNA binding | 1.20E-03 |
| 22 | GO:0031072: heat shock protein binding | 1.67E-03 |
| 23 | GO:0004176: ATP-dependent peptidase activity | 2.56E-03 |
| 24 | GO:0022891: substrate-specific transmembrane transporter activity | 2.89E-03 |
| 25 | GO:0003727: single-stranded RNA binding | 3.05E-03 |
| 26 | GO:0000287: magnesium ion binding | 3.21E-03 |
| 27 | GO:0004812: aminoacyl-tRNA ligase activity | 3.22E-03 |
| 28 | GO:0008483: transaminase activity | 4.90E-03 |
| 29 | GO:0008237: metallopeptidase activity | 4.90E-03 |
| 30 | GO:0016168: chlorophyll binding | 5.52E-03 |
| 31 | GO:0008236: serine-type peptidase activity | 6.16E-03 |
| 32 | GO:0004222: metalloendopeptidase activity | 6.82E-03 |
| 33 | GO:0003746: translation elongation factor activity | 7.51E-03 |
| 34 | GO:0043621: protein self-association | 9.47E-03 |
| 35 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.99E-03 |
| 36 | GO:0003690: double-stranded DNA binding | 1.13E-02 |
| 37 | GO:0051082: unfolded protein binding | 1.42E-02 |
| 38 | GO:0016746: transferase activity, transferring acyl groups | 1.45E-02 |
| 39 | GO:0005525: GTP binding | 1.74E-02 |
| 40 | GO:0030170: pyridoxal phosphate binding | 1.79E-02 |
| 41 | GO:0042802: identical protein binding | 2.48E-02 |
| 42 | GO:0003735: structural constituent of ribosome | 4.26E-02 |
| 43 | GO:0003924: GTPase activity | 4.39E-02 |
| 44 | GO:0009055: electron carrier activity | 4.61E-02 |
| 45 | GO:0004519: endonuclease activity | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.14E-34 |
| 2 | GO:0009570: chloroplast stroma | 4.73E-12 |
| 3 | GO:0009941: chloroplast envelope | 3.59E-09 |
| 4 | GO:0009543: chloroplast thylakoid lumen | 5.34E-06 |
| 5 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 3.77E-05 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 6.79E-05 |
| 7 | GO:0042651: thylakoid membrane | 9.26E-05 |
| 8 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 9.40E-05 |
| 9 | GO:0009579: thylakoid | 2.93E-04 |
| 10 | GO:0031977: thylakoid lumen | 6.25E-04 |
| 11 | GO:0009508: plastid chromosome | 1.67E-03 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 2.40E-03 |
| 13 | GO:0009523: photosystem II | 3.94E-03 |
| 14 | GO:0019898: extrinsic component of membrane | 3.94E-03 |
| 15 | GO:0005840: ribosome | 4.08E-03 |
| 16 | GO:0009295: nucleoid | 4.90E-03 |
| 17 | GO:0009536: plastid | 4.98E-03 |
| 18 | GO:0015934: large ribosomal subunit | 7.05E-03 |
| 19 | GO:0009534: chloroplast thylakoid | 1.28E-02 |
| 20 | GO:0009706: chloroplast inner membrane | 1.42E-02 |
| 21 | GO:0005759: mitochondrial matrix | 1.95E-02 |
| 22 | GO:0031969: chloroplast membrane | 3.32E-02 |
| 23 | GO:0043231: intracellular membrane-bounded organelle | 4.70E-02 |