Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway0.00E+00
2GO:0045053: protein retention in Golgi apparatus0.00E+00
3GO:0006144: purine nucleobase metabolic process2.64E-05
4GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.64E-05
5GO:0019628: urate catabolic process2.64E-05
6GO:0000303: response to superoxide2.64E-05
7GO:0080136: priming of cellular response to stress2.64E-05
8GO:0010608: posttranscriptional regulation of gene expression6.72E-05
9GO:1905182: positive regulation of urease activity6.72E-05
10GO:0030010: establishment of cell polarity6.72E-05
11GO:0043617: cellular response to sucrose starvation1.18E-04
12GO:0006624: vacuolar protein processing1.76E-04
13GO:1902476: chloride transmembrane transport1.76E-04
14GO:0006809: nitric oxide biosynthetic process1.76E-04
15GO:2000038: regulation of stomatal complex development2.39E-04
16GO:0006878: cellular copper ion homeostasis2.39E-04
17GO:0043097: pyrimidine nucleoside salvage3.07E-04
18GO:0048015: phosphatidylinositol-mediated signaling3.07E-04
19GO:0006090: pyruvate metabolic process3.07E-04
20GO:0006206: pyrimidine nucleobase metabolic process3.78E-04
21GO:0009651: response to salt stress3.98E-04
22GO:0010016: shoot system morphogenesis4.53E-04
23GO:2000037: regulation of stomatal complex patterning4.53E-04
24GO:0000911: cytokinesis by cell plate formation4.53E-04
25GO:0006821: chloride transport5.30E-04
26GO:0009610: response to symbiotic fungus5.30E-04
27GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.30E-04
28GO:0006605: protein targeting6.10E-04
29GO:0010120: camalexin biosynthetic process6.94E-04
30GO:0006972: hyperosmotic response6.94E-04
31GO:0009880: embryonic pattern specification6.94E-04
32GO:0009626: plant-type hypersensitive response7.30E-04
33GO:0048507: meristem development7.80E-04
34GO:0042761: very long-chain fatty acid biosynthetic process8.68E-04
35GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.68E-04
36GO:0010629: negative regulation of gene expression9.59E-04
37GO:0072593: reactive oxygen species metabolic process1.05E-03
38GO:0043085: positive regulation of catalytic activity1.05E-03
39GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.15E-03
40GO:0012501: programmed cell death1.15E-03
41GO:0009790: embryo development1.17E-03
42GO:0010102: lateral root morphogenesis1.25E-03
43GO:0006807: nitrogen compound metabolic process1.25E-03
44GO:0006108: malate metabolic process1.25E-03
45GO:0010229: inflorescence development1.25E-03
46GO:0055046: microgametogenesis1.25E-03
47GO:0009933: meristem structural organization1.35E-03
48GO:0007034: vacuolar transport1.35E-03
49GO:0046854: phosphatidylinositol phosphorylation1.45E-03
50GO:0007031: peroxisome organization1.45E-03
51GO:0007030: Golgi organization1.45E-03
52GO:0009825: multidimensional cell growth1.45E-03
53GO:2000377: regulation of reactive oxygen species metabolic process1.67E-03
54GO:0061077: chaperone-mediated protein folding1.90E-03
55GO:0006970: response to osmotic stress2.26E-03
56GO:0009723: response to ethylene2.43E-03
57GO:0010197: polar nucleus fusion2.65E-03
58GO:0009646: response to absence of light2.78E-03
59GO:0006623: protein targeting to vacuole2.91E-03
60GO:0010183: pollen tube guidance2.91E-03
61GO:0010193: response to ozone3.05E-03
62GO:0006635: fatty acid beta-oxidation3.05E-03
63GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.05E-03
64GO:0045892: negative regulation of transcription, DNA-templated3.15E-03
65GO:0016032: viral process3.19E-03
66GO:0006886: intracellular protein transport3.20E-03
67GO:0030163: protein catabolic process3.33E-03
68GO:0006914: autophagy3.47E-03
69GO:0006629: lipid metabolic process3.81E-03
70GO:0009816: defense response to bacterium, incompatible interaction4.06E-03
71GO:0006950: response to stress4.37E-03
72GO:0016049: cell growth4.53E-03
73GO:0048481: plant ovule development4.69E-03
74GO:0048527: lateral root development5.18E-03
75GO:0009867: jasmonic acid mediated signaling pathway5.52E-03
76GO:0009737: response to abscisic acid5.64E-03
77GO:0009735: response to cytokinin6.16E-03
78GO:0006897: endocytosis6.21E-03
79GO:0009744: response to sucrose6.57E-03
80GO:0009611: response to wounding6.89E-03
81GO:0009736: cytokinin-activated signaling pathway8.08E-03
82GO:0010224: response to UV-B8.28E-03
83GO:0051603: proteolysis involved in cellular protein catabolic process8.28E-03
84GO:0016567: protein ubiquitination8.86E-03
85GO:0006511: ubiquitin-dependent protein catabolic process9.15E-03
86GO:0009058: biosynthetic process1.26E-02
87GO:0006979: response to oxidative stress1.38E-02
88GO:0040008: regulation of growth1.47E-02
89GO:0010150: leaf senescence1.52E-02
90GO:0006470: protein dephosphorylation1.67E-02
91GO:0009617: response to bacterium1.73E-02
92GO:0010468: regulation of gene expression1.73E-02
93GO:0015031: protein transport1.74E-02
94GO:0009826: unidimensional cell growth2.02E-02
95GO:0048366: leaf development2.33E-02
96GO:0010200: response to chitin2.48E-02
97GO:0046777: protein autophosphorylation2.54E-02
98GO:0016042: lipid catabolic process3.13E-02
99GO:0009751: response to salicylic acid3.16E-02
100GO:0048364: root development3.29E-02
101GO:0009753: response to jasmonic acid3.36E-02
102GO:0009873: ethylene-activated signaling pathway3.83E-02
103GO:0009734: auxin-activated signaling pathway4.07E-02
104GO:0006508: proteolysis4.20E-02
105GO:0009738: abscisic acid-activated signaling pathway4.69E-02
106GO:0009555: pollen development4.80E-02
RankGO TermAdjusted P value
1GO:0004846: urate oxidase activity0.00E+00
2GO:0016508: long-chain-enoyl-CoA hydratase activity0.00E+00
3GO:0008692: 3-hydroxybutyryl-CoA epimerase activity2.64E-05
4GO:0016303: 1-phosphatidylinositol-3-kinase activity2.64E-05
5GO:0004175: endopeptidase activity3.34E-05
6GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity6.72E-05
7GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity1.18E-04
8GO:0016151: nickel cation binding1.18E-04
9GO:0005047: signal recognition particle binding1.18E-04
10GO:0004165: dodecenoyl-CoA delta-isomerase activity1.76E-04
11GO:0004300: enoyl-CoA hydratase activity1.76E-04
12GO:0004470: malic enzyme activity2.39E-04
13GO:0005253: anion channel activity2.39E-04
14GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor2.39E-04
15GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity2.39E-04
16GO:0005247: voltage-gated chloride channel activity3.78E-04
17GO:0003924: GTPase activity4.42E-04
18GO:0004849: uridine kinase activity4.53E-04
19GO:0003950: NAD+ ADP-ribosyltransferase activity4.53E-04
20GO:0045309: protein phosphorylated amino acid binding8.68E-04
21GO:0019904: protein domain specific binding1.05E-03
22GO:0004190: aspartic-type endopeptidase activity1.45E-03
23GO:0005525: GTP binding1.67E-03
24GO:0005528: FK506 binding1.67E-03
25GO:0004707: MAP kinase activity1.90E-03
26GO:0046982: protein heterodimerization activity2.07E-03
27GO:0004197: cysteine-type endopeptidase activity3.19E-03
28GO:0042803: protein homodimerization activity3.25E-03
29GO:0004806: triglyceride lipase activity4.37E-03
30GO:0050897: cobalt ion binding5.18E-03
31GO:0004712: protein serine/threonine/tyrosine kinase activity5.86E-03
32GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.31E-03
33GO:0051287: NAD binding7.50E-03
34GO:0031625: ubiquitin protein ligase binding8.68E-03
35GO:0005516: calmodulin binding1.01E-02
36GO:0005515: protein binding1.10E-02
37GO:0005524: ATP binding1.55E-02
38GO:0004842: ubiquitin-protein transferase activity1.89E-02
39GO:0004672: protein kinase activity2.01E-02
40GO:0003677: DNA binding2.44E-02
41GO:0061630: ubiquitin protein ligase activity2.51E-02
42GO:0004722: protein serine/threonine phosphatase activity2.94E-02
43GO:0016787: hydrolase activity2.94E-02
44GO:0000166: nucleotide binding4.80E-02
RankGO TermAdjusted P value
1GO:0005942: phosphatidylinositol 3-kinase complex0.00E+00
2GO:0005785: signal recognition particle receptor complex0.00E+00
3GO:0017119: Golgi transport complex1.73E-05
4GO:0016602: CCAAT-binding factor complex2.88E-05
5GO:0030139: endocytic vesicle1.18E-04
6GO:0000323: lytic vacuole1.76E-04
7GO:0034707: chloride channel complex3.78E-04
8GO:0031902: late endosome membrane4.05E-04
9GO:0016363: nuclear matrix4.53E-04
10GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.94E-04
11GO:0009514: glyoxysome6.94E-04
12GO:0030665: clathrin-coated vesicle membrane8.68E-04
13GO:0048471: perinuclear region of cytoplasm1.05E-03
14GO:0005783: endoplasmic reticulum1.44E-03
15GO:0030136: clathrin-coated vesicle2.39E-03
16GO:0000786: nucleosome5.35E-03
17GO:0005829: cytosol7.35E-03
18GO:0005794: Golgi apparatus7.49E-03
19GO:0005777: peroxisome7.73E-03
20GO:0005635: nuclear envelope8.48E-03
21GO:0005623: cell1.23E-02
22GO:0005768: endosome1.23E-02
23GO:0005759: mitochondrial matrix1.42E-02
24GO:0009705: plant-type vacuole membrane1.52E-02
25GO:0005773: vacuole1.80E-02
26GO:0005789: endoplasmic reticulum membrane2.09E-02
27GO:0043231: intracellular membrane-bounded organelle3.42E-02
28GO:0005887: integral component of plasma membrane3.97E-02
29GO:0005774: vacuolar membrane4.73E-02
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Gene type



Gene DE type