co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0060416: response to growth hormone	0.00E+00
3	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.67E-05
6	GO:0051180: vitamin transport	1.48E-04
7	GO:0070509: calcium ion import	1.48E-04
8	GO:0007263: nitric oxide mediated signal transduction	1.48E-04
9	GO:0030974: thiamine pyrophosphate transport	1.48E-04
10	GO:0043266: regulation of potassium ion transport	1.48E-04
11	GO:0006723: cuticle hydrocarbon biosynthetic process	1.48E-04
12	GO:0042547: cell wall modification involved in multidimensional cell growth	1.48E-04
13	GO:2000021: regulation of ion homeostasis	1.48E-04
14	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.48E-04
15	GO:0043007: maintenance of rDNA	1.48E-04
16	GO:0006629: lipid metabolic process	2.84E-04
17	GO:0048527: lateral root development	2.92E-04
18	GO:0006695: cholesterol biosynthetic process	3.38E-04
19	GO:0015893: drug transport	3.38E-04
20	GO:0016560: protein import into peroxisome matrix, docking	3.38E-04
21	GO:0045717: negative regulation of fatty acid biosynthetic process	3.38E-04
22	GO:0080148: negative regulation of response to water deprivation	3.38E-04
23	GO:0010289: homogalacturonan biosynthetic process	3.38E-04
24	GO:0010270: photosystem II oxygen evolving complex assembly	3.38E-04
25	GO:0006833: water transport	4.90E-04
26	GO:0043447: alkane biosynthetic process	5.54E-04
27	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	5.54E-04
28	GO:0043617: cellular response to sucrose starvation	5.54E-04
29	GO:0051176: positive regulation of sulfur metabolic process	5.54E-04
30	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	5.54E-04
31	GO:0031022: nuclear migration along microfilament	5.54E-04
32	GO:1902448: positive regulation of shade avoidance	5.54E-04
33	GO:0006515: misfolded or incompletely synthesized protein catabolic process	7.93E-04
34	GO:0034220: ion transmembrane transport	9.81E-04
35	GO:1901601: strigolactone biosynthetic process	1.05E-03
36	GO:0006749: glutathione metabolic process	1.05E-03
37	GO:0009741: response to brassinosteroid	1.05E-03
38	GO:0006085: acetyl-CoA biosynthetic process	1.05E-03
39	GO:0009742: brassinosteroid mediated signaling pathway	1.11E-03
40	GO:0071554: cell wall organization or biogenesis	1.29E-03
41	GO:0009904: chloroplast accumulation movement	1.33E-03
42	GO:0045038: protein import into chloroplast thylakoid membrane	1.33E-03
43	GO:0009435: NAD biosynthetic process	1.33E-03
44	GO:0016554: cytidine to uridine editing	1.63E-03
45	GO:0006828: manganese ion transport	1.63E-03
46	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.63E-03
47	GO:0010405: arabinogalactan protein metabolic process	1.63E-03
48	GO:0006751: glutathione catabolic process	1.63E-03
49	GO:0009903: chloroplast avoidance movement	1.96E-03
50	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.30E-03
51	GO:0010444: guard mother cell differentiation	2.30E-03
52	GO:0051510: regulation of unidimensional cell growth	2.30E-03
53	GO:0008610: lipid biosynthetic process	2.66E-03
54	GO:0009690: cytokinin metabolic process	2.66E-03
55	GO:0010078: maintenance of root meristem identity	2.66E-03
56	GO:0009704: de-etiolation	2.66E-03
57	GO:0043562: cellular response to nitrogen levels	3.04E-03
58	GO:0009826: unidimensional cell growth	3.39E-03
59	GO:0045337: farnesyl diphosphate biosynthetic process	3.44E-03
60	GO:0033384: geranyl diphosphate biosynthetic process	3.44E-03
61	GO:0009060: aerobic respiration	3.44E-03
62	GO:1900865: chloroplast RNA modification	3.86E-03
63	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	3.86E-03
64	GO:0006779: porphyrin-containing compound biosynthetic process	3.86E-03
65	GO:0006782: protoporphyrinogen IX biosynthetic process	4.29E-03
66	GO:0006816: calcium ion transport	4.73E-03
67	GO:0016485: protein processing	4.73E-03
68	GO:0009684: indoleacetic acid biosynthetic process	4.73E-03
69	GO:0010152: pollen maturation	5.20E-03
70	GO:0012501: programmed cell death	5.20E-03
71	GO:0010588: cotyledon vascular tissue pattern formation	5.68E-03
72	GO:0050826: response to freezing	5.68E-03
73	GO:0010207: photosystem II assembly	6.17E-03
74	GO:0010223: secondary shoot formation	6.17E-03
75	GO:0048768: root hair cell tip growth	6.17E-03
76	GO:0048467: gynoecium development	6.17E-03
77	GO:0010025: wax biosynthetic process	7.20E-03
78	GO:0008152: metabolic process	8.68E-03
79	GO:0035428: hexose transmembrane transport	9.43E-03
80	GO:0009814: defense response, incompatible interaction	9.43E-03
81	GO:0016226: iron-sulfur cluster assembly	9.43E-03
82	GO:0071369: cellular response to ethylene stimulus	1.00E-02
83	GO:0040007: growth	1.00E-02
84	GO:0048443: stamen development	1.06E-02
85	GO:0009793: embryo development ending in seed dormancy	1.18E-02
86	GO:0042335: cuticle development	1.19E-02
87	GO:0042391: regulation of membrane potential	1.19E-02
88	GO:0080022: primary root development	1.19E-02
89	GO:0010087: phloem or xylem histogenesis	1.19E-02
90	GO:0042631: cellular response to water deprivation	1.19E-02
91	GO:0040008: regulation of growth	1.23E-02
92	GO:0009958: positive gravitropism	1.25E-02
93	GO:0046323: glucose import	1.25E-02
94	GO:0045490: pectin catabolic process	1.29E-02
95	GO:0007018: microtubule-based movement	1.32E-02
96	GO:0009646: response to absence of light	1.32E-02
97	GO:0009791: post-embryonic development	1.39E-02
98	GO:0048825: cotyledon development	1.39E-02
99	GO:0009851: auxin biosynthetic process	1.39E-02
100	GO:0048235: pollen sperm cell differentiation	1.52E-02
101	GO:0030163: protein catabolic process	1.59E-02
102	GO:0006810: transport	1.88E-02
103	GO:0015995: chlorophyll biosynthetic process	2.12E-02
104	GO:0016311: dephosphorylation	2.20E-02
105	GO:0007049: cell cycle	2.24E-02
106	GO:0030244: cellulose biosynthetic process	2.28E-02
107	GO:0010311: lateral root formation	2.36E-02
108	GO:0000160: phosphorelay signal transduction system	2.36E-02
109	GO:0009407: toxin catabolic process	2.45E-02
110	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.58E-02
111	GO:0046777: protein autophosphorylation	2.66E-02
112	GO:0016051: carbohydrate biosynthetic process	2.70E-02
113	GO:0006839: mitochondrial transport	2.96E-02
114	GO:0030001: metal ion transport	2.96E-02
115	GO:0009640: photomorphogenesis	3.23E-02
116	GO:0009744: response to sucrose	3.23E-02
117	GO:0051707: response to other organism	3.23E-02
118	GO:0009636: response to toxic substance	3.51E-02
119	GO:0006468: protein phosphorylation	3.65E-02
120	GO:0009664: plant-type cell wall organization	3.80E-02
121	GO:0042538: hyperosmotic salinity response	3.80E-02
122	GO:0009736: cytokinin-activated signaling pathway	4.00E-02
123	GO:0051603: proteolysis involved in cellular protein catabolic process	4.10E-02
124	GO:0006857: oligopeptide transport	4.20E-02
125	GO:0006096: glycolytic process	4.50E-02
126	GO:0048316: seed development	4.61E-02
127	GO:0048367: shoot system development	4.61E-02
128	GO:0009626: plant-type hypersensitive response	4.71E-02
129	GO:0009740: gibberellic acid mediated signaling pathway	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0008987: quinolinate synthetase A activity	0.00E+00
2	GO:0038198: auxin receptor activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:1990534: thermospermine oxidase activity	0.00E+00
5	GO:0005048: signal sequence binding	0.00E+00
6	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
7	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
8	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	1.48E-04
9	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	1.48E-04
10	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.48E-04
11	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.48E-04
12	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	1.48E-04
13	GO:0090422: thiamine pyrophosphate transporter activity	1.48E-04
14	GO:0000822: inositol hexakisphosphate binding	3.38E-04
15	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	3.38E-04
16	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.38E-04
17	GO:0003839: gamma-glutamylcyclotransferase activity	3.38E-04
18	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	3.38E-04
19	GO:0030267: glyoxylate reductase (NADP) activity	5.54E-04
20	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	5.54E-04
21	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	5.54E-04
22	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	5.54E-04
23	GO:0001872: (1->3)-beta-D-glucan binding	7.93E-04
24	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	7.93E-04
25	GO:0003878: ATP citrate synthase activity	7.93E-04
26	GO:0010011: auxin binding	1.05E-03
27	GO:0016836: hydro-lyase activity	1.05E-03
28	GO:0016846: carbon-sulfur lyase activity	1.33E-03
29	GO:0004518: nuclease activity	1.37E-03
30	GO:0035673: oligopeptide transmembrane transporter activity	1.63E-03
31	GO:0042578: phosphoric ester hydrolase activity	1.63E-03
32	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.63E-03
33	GO:0016413: O-acetyltransferase activity	1.75E-03
34	GO:0015250: water channel activity	1.85E-03
35	GO:0005261: cation channel activity	1.96E-03
36	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.96E-03
37	GO:0005242: inward rectifier potassium channel activity	1.96E-03
38	GO:0004033: aldo-keto reductase (NADP) activity	2.66E-03
39	GO:0008312: 7S RNA binding	2.66E-03
40	GO:0004337: geranyltranstransferase activity	3.44E-03
41	GO:0005384: manganese ion transmembrane transporter activity	3.86E-03
42	GO:0047617: acyl-CoA hydrolase activity	3.86E-03
43	GO:0008047: enzyme activator activity	4.29E-03
44	GO:0004161: dimethylallyltranstransferase activity	4.73E-03
45	GO:0015198: oligopeptide transporter activity	5.20E-03
46	GO:0004674: protein serine/threonine kinase activity	5.50E-03
47	GO:0004565: beta-galactosidase activity	5.68E-03
48	GO:0008081: phosphoric diester hydrolase activity	5.68E-03
49	GO:0015095: magnesium ion transmembrane transporter activity	5.68E-03
50	GO:0005262: calcium channel activity	5.68E-03
51	GO:0008131: primary amine oxidase activity	6.17E-03
52	GO:0004190: aspartic-type endopeptidase activity	6.67E-03
53	GO:0030552: cAMP binding	6.67E-03
54	GO:0030553: cGMP binding	6.67E-03
55	GO:0080043: quercetin 3-O-glucosyltransferase activity	6.82E-03
56	GO:0080044: quercetin 7-O-glucosyltransferase activity	6.82E-03
57	GO:0005528: FK506 binding	7.74E-03
58	GO:0005216: ion channel activity	8.29E-03
59	GO:0004176: ATP-dependent peptidase activity	8.85E-03
60	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.85E-03
61	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.43E-03
62	GO:0030570: pectate lyase activity	1.00E-02
63	GO:0016829: lyase activity	1.01E-02
64	GO:0046872: metal ion binding	1.02E-02
65	GO:0030551: cyclic nucleotide binding	1.19E-02
66	GO:0005355: glucose transmembrane transporter activity	1.32E-02
67	GO:0008017: microtubule binding	1.35E-02
68	GO:0008194: UDP-glycosyltransferase activity	1.45E-02
69	GO:0000156: phosphorelay response regulator activity	1.59E-02
70	GO:0046983: protein dimerization activity	1.63E-02
71	GO:0016597: amino acid binding	1.81E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	2.04E-02
73	GO:0030247: polysaccharide binding	2.12E-02
74	GO:0008236: serine-type peptidase activity	2.20E-02
75	GO:0030246: carbohydrate binding	2.31E-02
76	GO:0003993: acid phosphatase activity	2.79E-02
77	GO:0051539: 4 iron, 4 sulfur cluster binding	2.96E-02
78	GO:0004364: glutathione transferase activity	3.14E-02
79	GO:0016301: kinase activity	3.16E-02
80	GO:0004185: serine-type carboxypeptidase activity	3.23E-02
81	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.61E-02
82	GO:0016298: lipase activity	4.10E-02
83	GO:0003777: microtubule motor activity	4.30E-02
84	GO:0045330: aspartyl esterase activity	4.30E-02
85	GO:0005215: transporter activity	4.34E-02
86	GO:0030599: pectinesterase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0043233: organelle lumen	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0080085: signal recognition particle, chloroplast targeting	3.38E-04
4	GO:0005782: peroxisomal matrix	5.54E-04
5	GO:0009346: citrate lyase complex	7.93E-04
6	GO:0005887: integral component of plasma membrane	2.41E-03
7	GO:0005886: plasma membrane	2.49E-03
8	GO:0046658: anchored component of plasma membrane	2.92E-03
9	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.04E-03
10	GO:0055028: cortical microtubule	4.29E-03
11	GO:0030659: cytoplasmic vesicle membrane	6.17E-03
12	GO:0005871: kinesin complex	1.13E-02
13	GO:0009507: chloroplast	1.16E-02
14	GO:0016021: integral component of membrane	1.28E-02
15	GO:0000151: ubiquitin ligase complex	2.28E-02
16	GO:0019005: SCF ubiquitin ligase complex	2.28E-02
17	GO:0005874: microtubule	2.41E-02
18	GO:0009570: chloroplast stroma	2.69E-02
19	GO:0031225: anchored component of membrane	2.78E-02
20	GO:0031977: thylakoid lumen	3.05E-02
21	GO:0005768: endosome	3.37E-02
22	GO:0043231: intracellular membrane-bounded organelle	4.04E-02