co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071217: cellular response to external biotic stimulus	6.50E-06
2	GO:0046898: response to cycloheximide	6.50E-06
3	GO:0030029: actin filament-based process	1.23E-05
4	GO:0010272: response to silver ion	1.23E-05
5	GO:0080036: regulation of cytokinin-activated signaling pathway	5.85E-05
6	GO:0007062: sister chromatid cohesion	1.10E-04
7	GO:0007064: mitotic sister chromatid cohesion	1.39E-04
8	GO:0010540: basipetal auxin transport	2.03E-04
9	GO:0048467: gynoecium development	2.03E-04
10	GO:0006281: DNA repair	2.16E-04
11	GO:0051321: meiotic cell cycle	2.90E-04
12	GO:0006366: transcription from RNA polymerase II promoter	2.90E-04
13	GO:0010082: regulation of root meristem growth	3.27E-04
14	GO:0007059: chromosome segregation	4.23E-04
15	GO:0001666: response to hypoxia	5.89E-04
16	GO:0006974: cellular response to DNA damage stimulus	6.32E-04
17	GO:0048481: plant ovule development	6.99E-04
18	GO:0009909: regulation of flower development	1.24E-03
19	GO:0009620: response to fungus	1.37E-03
20	GO:0007275: multicellular organism development	1.44E-03
21	GO:0009624: response to nematode	1.46E-03
22	GO:0009790: embryo development	1.87E-03
23	GO:0016036: cellular response to phosphate starvation	2.00E-03
24	GO:0009617: response to bacterium	2.36E-03
25	GO:0006397: mRNA processing	4.35E-03
26	GO:0009734: auxin-activated signaling pathway	5.35E-03
27	GO:0035556: intracellular signal transduction	6.51E-03
28	GO:0051301: cell division	6.65E-03
29	GO:0006979: response to oxidative stress	1.03E-02
30	GO:0030154: cell differentiation	1.09E-02
31	GO:0009733: response to auxin	1.11E-02
32	GO:0016310: phosphorylation	1.94E-02
33	GO:0006351: transcription, DNA-templated	4.05E-02
34	GO:0006468: protein phosphorylation	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0060090: binding, bridging	0.00E+00
2	GO:0004430: 1-phosphatidylinositol 4-kinase activity	9.62E-05
3	GO:0001055: RNA polymerase II activity	1.24E-04
4	GO:0003712: transcription cofactor activity	2.20E-04
5	GO:0043424: protein histidine kinase binding	2.72E-04
6	GO:0005200: structural constituent of cytoskeleton	5.46E-04
7	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.16E-03
8	GO:0046982: protein heterodimerization activity	2.77E-03
9	GO:0003682: chromatin binding	2.91E-03
10	GO:0016301: kinase activity	1.21E-02
11	GO:0005524: ATP binding	1.28E-02
12	GO:0004672: protein kinase activity	1.35E-02
13	GO:0005515: protein binding	1.85E-02
14	GO:0003676: nucleic acid binding	2.81E-02
15	GO:0004674: protein serine/threonine kinase activity	3.20E-02
16	GO:0003723: RNA binding	4.44E-02
17	GO:0003677: DNA binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0008278: cohesin complex	6.50E-06
2	GO:0005654: nucleoplasm	4.65E-05
3	GO:0016363: nuclear matrix	5.85E-05
4	GO:0005665: DNA-directed RNA polymerase II, core complex	1.70E-04
5	GO:0000775: chromosome, centromeric region	3.08E-04
6	GO:0000785: chromatin	4.84E-04
7	GO:0019005: SCF ubiquitin ligase complex	6.99E-04
8	GO:0005819: spindle	8.61E-04
9	GO:0005634: nucleus	9.41E-04
10	GO:0009506: plasmodesma	1.23E-03
11	GO:0005730: nucleolus	1.49E-02
12	GO:0005737: cytoplasm	2.22E-02
13	GO:0005773: vacuole	3.37E-02