co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
3	GO:0006793: phosphorus metabolic process	0.00E+00
4	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
5	GO:0006182: cGMP biosynthetic process	0.00E+00
6	GO:0044794: positive regulation by host of viral process	0.00E+00
7	GO:0006457: protein folding	2.08E-05
8	GO:0042742: defense response to bacterium	8.60E-05
9	GO:0006979: response to oxidative stress	8.79E-05
10	GO:0007264: small GTPase mediated signal transduction	1.86E-04
11	GO:0044376: RNA polymerase II complex import to nucleus	1.95E-04
12	GO:0046244: salicylic acid catabolic process	1.95E-04
13	GO:1990641: response to iron ion starvation	1.95E-04
14	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.95E-04
15	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.95E-04
16	GO:1990022: RNA polymerase III complex localization to nucleus	1.95E-04
17	GO:0006952: defense response	2.87E-04
18	GO:0044419: interspecies interaction between organisms	4.38E-04
19	GO:0006101: citrate metabolic process	4.38E-04
20	GO:0045905: positive regulation of translational termination	4.38E-04
21	GO:0051592: response to calcium ion	4.38E-04
22	GO:0031204: posttranslational protein targeting to membrane, translocation	4.38E-04
23	GO:0045901: positive regulation of translational elongation	4.38E-04
24	GO:0006452: translational frameshifting	4.38E-04
25	GO:0010150: leaf senescence	5.71E-04
26	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	7.14E-04
27	GO:0055074: calcium ion homeostasis	7.14E-04
28	GO:0010351: lithium ion transport	7.14E-04
29	GO:0009617: response to bacterium	7.48E-04
30	GO:0006468: protein phosphorylation	8.01E-04
31	GO:0006874: cellular calcium ion homeostasis	8.68E-04
32	GO:0006855: drug transmembrane transport	9.06E-04
33	GO:0098542: defense response to other organism	9.50E-04
34	GO:0006882: cellular zinc ion homeostasis	1.02E-03
35	GO:0001676: long-chain fatty acid metabolic process	1.02E-03
36	GO:0045017: glycerolipid biosynthetic process	1.02E-03
37	GO:0002239: response to oomycetes	1.02E-03
38	GO:0009626: plant-type hypersensitive response	1.44E-03
39	GO:0030041: actin filament polymerization	1.72E-03
40	GO:0046283: anthocyanin-containing compound metabolic process	1.72E-03
41	GO:0006097: glyoxylate cycle	1.72E-03
42	GO:0018344: protein geranylgeranylation	1.72E-03
43	GO:0010225: response to UV-C	1.72E-03
44	GO:0034052: positive regulation of plant-type hypersensitive response	1.72E-03
45	GO:0000304: response to singlet oxygen	1.72E-03
46	GO:0002229: defense response to oomycetes	1.89E-03
47	GO:0006561: proline biosynthetic process	2.12E-03
48	GO:0010942: positive regulation of cell death	2.12E-03
49	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.12E-03
50	GO:0010256: endomembrane system organization	2.12E-03
51	GO:0043248: proteasome assembly	2.12E-03
52	GO:0015031: protein transport	2.42E-03
53	GO:0010555: response to mannitol	2.54E-03
54	GO:2000067: regulation of root morphogenesis	2.54E-03
55	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.54E-03
56	GO:0009615: response to virus	2.71E-03
57	GO:0009408: response to heat	2.76E-03
58	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.00E-03
59	GO:0042773: ATP synthesis coupled electron transport	3.00E-03
60	GO:0030026: cellular manganese ion homeostasis	3.00E-03
61	GO:1900056: negative regulation of leaf senescence	3.00E-03
62	GO:0019745: pentacyclic triterpenoid biosynthetic process	3.00E-03
63	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.00E-03
64	GO:0009850: auxin metabolic process	3.47E-03
65	GO:0006102: isocitrate metabolic process	3.47E-03
66	GO:0009061: anaerobic respiration	3.47E-03
67	GO:0008219: cell death	3.53E-03
68	GO:0010120: camalexin biosynthetic process	3.97E-03
69	GO:0010204: defense response signaling pathway, resistance gene-independent	3.97E-03
70	GO:0007186: G-protein coupled receptor signaling pathway	3.97E-03
71	GO:0010112: regulation of systemic acquired resistance	4.49E-03
72	GO:0009060: aerobic respiration	4.49E-03
73	GO:0007338: single fertilization	4.49E-03
74	GO:0006098: pentose-phosphate shunt	4.49E-03
75	GO:0006099: tricarboxylic acid cycle	4.67E-03
76	GO:0008202: steroid metabolic process	5.04E-03
77	GO:0043067: regulation of programmed cell death	5.04E-03
78	GO:0090332: stomatal closure	5.04E-03
79	GO:0030042: actin filament depolymerization	5.04E-03
80	GO:0048268: clathrin coat assembly	5.04E-03
81	GO:0009688: abscisic acid biosynthetic process	5.61E-03
82	GO:0051555: flavonol biosynthetic process	5.61E-03
83	GO:0006896: Golgi to vacuole transport	5.61E-03
84	GO:0055062: phosphate ion homeostasis	5.61E-03
85	GO:0051707: response to other organism	5.76E-03
86	GO:0000272: polysaccharide catabolic process	6.20E-03
87	GO:0009750: response to fructose	6.20E-03
88	GO:0016485: protein processing	6.20E-03
89	GO:0009860: pollen tube growth	6.43E-03
90	GO:0009636: response to toxic substance	6.46E-03
91	GO:0000266: mitochondrial fission	6.81E-03
92	GO:0006790: sulfur compound metabolic process	6.81E-03
93	GO:0012501: programmed cell death	6.81E-03
94	GO:0002213: defense response to insect	6.81E-03
95	GO:0009718: anthocyanin-containing compound biosynthetic process	7.44E-03
96	GO:0006094: gluconeogenesis	7.44E-03
97	GO:0034605: cellular response to heat	8.10E-03
98	GO:0002237: response to molecule of bacterial origin	8.10E-03
99	GO:0046854: phosphatidylinositol phosphorylation	8.77E-03
100	GO:0009969: xyloglucan biosynthetic process	8.77E-03
101	GO:0042343: indole glucosinolate metabolic process	8.77E-03
102	GO:0010167: response to nitrate	8.77E-03
103	GO:0006071: glycerol metabolic process	9.46E-03
104	GO:0055114: oxidation-reduction process	9.63E-03
105	GO:0009620: response to fungus	1.01E-02
106	GO:0006886: intracellular protein transport	1.01E-02
107	GO:0030150: protein import into mitochondrial matrix	1.02E-02
108	GO:0010187: negative regulation of seed germination	1.02E-02
109	GO:0006406: mRNA export from nucleus	1.02E-02
110	GO:0005992: trehalose biosynthetic process	1.02E-02
111	GO:0009624: response to nematode	1.11E-02
112	GO:0046686: response to cadmium ion	1.18E-02
113	GO:0009751: response to salicylic acid	1.24E-02
114	GO:0007005: mitochondrion organization	1.24E-02
115	GO:0071456: cellular response to hypoxia	1.24E-02
116	GO:0019748: secondary metabolic process	1.24E-02
117	GO:0010227: floral organ abscission	1.32E-02
118	GO:0010089: xylem development	1.40E-02
119	GO:0008152: metabolic process	1.43E-02
120	GO:0008033: tRNA processing	1.57E-02
121	GO:0010118: stomatal movement	1.57E-02
122	GO:0009790: embryo development	1.62E-02
123	GO:0048544: recognition of pollen	1.74E-02
124	GO:0006814: sodium ion transport	1.74E-02
125	GO:0006413: translational initiation	1.79E-02
126	GO:0009749: response to glucose	1.83E-02
127	GO:0009851: auxin biosynthetic process	1.83E-02
128	GO:0010193: response to ozone	1.92E-02
129	GO:0000302: response to reactive oxygen species	1.92E-02
130	GO:0006891: intra-Golgi vesicle-mediated transport	1.92E-02
131	GO:0007165: signal transduction	1.95E-02
132	GO:0016032: viral process	2.01E-02
133	GO:0009737: response to abscisic acid	2.02E-02
134	GO:0009567: double fertilization forming a zygote and endosperm	2.20E-02
135	GO:0016310: phosphorylation	2.57E-02
136	GO:0009816: defense response to bacterium, incompatible interaction	2.60E-02
137	GO:0009607: response to biotic stimulus	2.60E-02
138	GO:0006888: ER to Golgi vesicle-mediated transport	2.80E-02
139	GO:0016311: dephosphorylation	2.91E-02
140	GO:0009817: defense response to fungus, incompatible interaction	3.02E-02
141	GO:0009832: plant-type cell wall biogenesis	3.12E-02
142	GO:0006499: N-terminal protein myristoylation	3.23E-02
143	GO:0009407: toxin catabolic process	3.23E-02
144	GO:0007568: aging	3.34E-02
145	GO:0000724: double-strand break repair via homologous recombination	3.46E-02
146	GO:0009853: photorespiration	3.57E-02
147	GO:0044550: secondary metabolite biosynthetic process	4.00E-02
148	GO:0006897: endocytosis	4.03E-02
149	GO:0006631: fatty acid metabolic process	4.03E-02
150	GO:0042542: response to hydrogen peroxide	4.15E-02
151	GO:0009744: response to sucrose	4.27E-02
152	GO:0031347: regulation of defense response	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
2	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
3	GO:0051670: inulinase activity	0.00E+00
4	GO:0005093: Rab GDP-dissociation inhibitor activity	6.66E-06
5	GO:0005524: ATP binding	8.43E-06
6	GO:0016301: kinase activity	2.25E-05
7	GO:0016491: oxidoreductase activity	1.89E-04
8	GO:0004674: protein serine/threonine kinase activity	1.93E-04
9	GO:0031219: levanase activity	1.95E-04
10	GO:0031127: alpha-(1,2)-fucosyltransferase activity	1.95E-04
11	GO:0051669: fructan beta-fructosidase activity	1.95E-04
12	GO:0005509: calcium ion binding	3.30E-04
13	GO:0008559: xenobiotic-transporting ATPase activity	3.91E-04
14	GO:0015036: disulfide oxidoreductase activity	4.38E-04
15	GO:0008517: folic acid transporter activity	4.38E-04
16	GO:0003994: aconitate hydratase activity	4.38E-04
17	GO:0032934: sterol binding	4.38E-04
18	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.84E-04
19	GO:0003924: GTPase activity	5.83E-04
20	GO:0051539: 4 iron, 4 sulfur cluster binding	6.40E-04
21	GO:0009055: electron carrier activity	6.60E-04
22	GO:0030246: carbohydrate binding	6.72E-04
23	GO:0031683: G-protein beta/gamma-subunit complex binding	7.14E-04
24	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	7.14E-04
25	GO:0004383: guanylate cyclase activity	7.14E-04
26	GO:0001664: G-protein coupled receptor binding	7.14E-04
27	GO:0042299: lupeol synthase activity	1.02E-03
28	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.02E-03
29	GO:0004031: aldehyde oxidase activity	1.35E-03
30	GO:0016866: intramolecular transferase activity	1.35E-03
31	GO:0050302: indole-3-acetaldehyde oxidase activity	1.35E-03
32	GO:0015368: calcium:cation antiporter activity	1.35E-03
33	GO:0015369: calcium:proton antiporter activity	1.35E-03
34	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.35E-03
35	GO:0050660: flavin adenine dinucleotide binding	1.37E-03
36	GO:0010181: FMN binding	1.65E-03
37	GO:0051082: unfolded protein binding	1.68E-03
38	GO:0017137: Rab GTPase binding	1.72E-03
39	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.72E-03
40	GO:0000104: succinate dehydrogenase activity	1.72E-03
41	GO:0002020: protease binding	1.72E-03
42	GO:0102229: amylopectin maltohydrolase activity	2.12E-03
43	GO:0004332: fructose-bisphosphate aldolase activity	2.12E-03
44	GO:0016161: beta-amylase activity	2.54E-03
45	GO:0004144: diacylglycerol O-acyltransferase activity	2.54E-03
46	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.54E-03
47	GO:0102391: decanoate--CoA ligase activity	2.54E-03
48	GO:0051213: dioxygenase activity	2.71E-03
49	GO:0004467: long-chain fatty acid-CoA ligase activity	3.00E-03
50	GO:0004143: diacylglycerol kinase activity	3.00E-03
51	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.00E-03
52	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.47E-03
53	GO:0043022: ribosome binding	3.47E-03
54	GO:0015491: cation:cation antiporter activity	3.47E-03
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.53E-03
56	GO:0015238: drug transmembrane transporter activity	3.71E-03
57	GO:0005096: GTPase activator activity	3.71E-03
58	GO:0008194: UDP-glycosyltransferase activity	3.88E-03
59	GO:0003951: NAD+ kinase activity	3.97E-03
60	GO:0008142: oxysterol binding	3.97E-03
61	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.47E-03
62	GO:0008417: fucosyltransferase activity	4.49E-03
63	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.49E-03
64	GO:0045309: protein phosphorylated amino acid binding	5.04E-03
65	GO:0005545: 1-phosphatidylinositol binding	5.61E-03
66	GO:0019904: protein domain specific binding	6.20E-03
67	GO:0051537: 2 iron, 2 sulfur cluster binding	6.22E-03
68	GO:0043531: ADP binding	6.58E-03
69	GO:0015266: protein channel activity	7.44E-03
70	GO:0004022: alcohol dehydrogenase (NAD) activity	7.44E-03
71	GO:0003712: transcription cofactor activity	8.77E-03
72	GO:0005217: intracellular ligand-gated ion channel activity	8.77E-03
73	GO:0004970: ionotropic glutamate receptor activity	8.77E-03
74	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.01E-02
75	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.01E-02
76	GO:0051536: iron-sulfur cluster binding	1.02E-02
77	GO:0003954: NADH dehydrogenase activity	1.02E-02
78	GO:0003779: actin binding	1.07E-02
79	GO:0043424: protein histidine kinase binding	1.09E-02
80	GO:0035251: UDP-glucosyltransferase activity	1.17E-02
81	GO:0016758: transferase activity, transferring hexosyl groups	1.35E-02
82	GO:0005525: GTP binding	1.40E-02
83	GO:0005199: structural constituent of cell wall	1.65E-02
84	GO:0030276: clathrin binding	1.65E-02
85	GO:0008565: protein transporter activity	1.66E-02
86	GO:0016853: isomerase activity	1.74E-02
87	GO:0015297: antiporter activity	1.83E-02
88	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.92E-02
89	GO:0004197: cysteine-type endopeptidase activity	2.01E-02
90	GO:0003743: translation initiation factor activity	2.24E-02
91	GO:0008237: metallopeptidase activity	2.30E-02
92	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.44E-02
93	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.70E-02
94	GO:0030247: polysaccharide binding	2.80E-02
95	GO:0004683: calmodulin-dependent protein kinase activity	2.80E-02
96	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.91E-02
97	GO:0004222: metalloendopeptidase activity	3.23E-02
98	GO:0050897: cobalt ion binding	3.34E-02
99	GO:0003746: translation elongation factor activity	3.57E-02
100	GO:0004364: glutathione transferase activity	4.15E-02
101	GO:0005516: calmodulin binding	4.32E-02
102	GO:0016757: transferase activity, transferring glycosyl groups	4.40E-02
103	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.74E-02
104	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0005788: endoplasmic reticulum lumen	6.57E-07
4	GO:0005886: plasma membrane	2.66E-06
5	GO:0005911: cell-cell junction	1.95E-04
6	GO:0031314: extrinsic component of mitochondrial inner membrane	4.38E-04
7	GO:0016021: integral component of membrane	4.44E-04
8	GO:0005783: endoplasmic reticulum	5.90E-04
9	GO:0005774: vacuolar membrane	6.96E-04
10	GO:0009530: primary cell wall	7.14E-04
11	GO:0005794: Golgi apparatus	7.39E-04
12	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.02E-03
13	GO:0030136: clathrin-coated vesicle	1.32E-03
14	GO:0030127: COPII vesicle coat	2.12E-03
15	GO:0031305: integral component of mitochondrial inner membrane	3.47E-03
16	GO:0045273: respiratory chain complex II	3.47E-03
17	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.47E-03
18	GO:0000325: plant-type vacuole	4.08E-03
19	GO:0090404: pollen tube tip	6.20E-03
20	GO:0008541: proteasome regulatory particle, lid subcomplex	6.20E-03
21	GO:0031307: integral component of mitochondrial outer membrane	6.81E-03
22	GO:0031966: mitochondrial membrane	7.22E-03
23	GO:0005750: mitochondrial respiratory chain complex III	8.10E-03
24	GO:0005618: cell wall	8.11E-03
25	GO:0005795: Golgi stack	8.77E-03
26	GO:0009506: plasmodesma	9.04E-03
27	GO:0005758: mitochondrial intermembrane space	1.02E-02
28	GO:0045271: respiratory chain complex I	1.09E-02
29	GO:0005741: mitochondrial outer membrane	1.17E-02
30	GO:0005905: clathrin-coated pit	1.17E-02
31	GO:0015629: actin cytoskeleton	1.32E-02
32	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.40E-02
33	GO:0005773: vacuole	1.51E-02
34	GO:0009705: plant-type vacuole membrane	1.92E-02
35	GO:0005829: cytosol	1.98E-02
36	GO:0016592: mediator complex	2.01E-02
37	GO:0032580: Golgi cisterna membrane	2.20E-02
38	GO:0030529: intracellular ribonucleoprotein complex	2.50E-02
39	GO:0005777: peroxisome	3.09E-02
40	GO:0005874: microtubule	3.56E-02
41	GO:0048046: apoplast	4.90E-02