Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G12740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051553: flavone biosynthetic process0.00E+00
2GO:0072660: maintenance of protein location in plasma membrane0.00E+00
3GO:0071327: cellular response to trehalose stimulus0.00E+00
4GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
5GO:0051245: negative regulation of cellular defense response0.00E+00
6GO:0045792: negative regulation of cell size0.00E+00
7GO:1900367: positive regulation of defense response to insect0.00E+00
8GO:0009816: defense response to bacterium, incompatible interaction3.30E-09
9GO:0006952: defense response8.89E-09
10GO:0010200: response to chitin1.77E-08
11GO:0006468: protein phosphorylation2.35E-08
12GO:0042742: defense response to bacterium6.97E-08
13GO:0009617: response to bacterium4.37E-07
14GO:0080142: regulation of salicylic acid biosynthetic process4.42E-07
15GO:0043069: negative regulation of programmed cell death5.37E-07
16GO:0010942: positive regulation of cell death1.93E-06
17GO:0070588: calcium ion transmembrane transport2.54E-06
18GO:0010618: aerenchyma formation4.22E-06
19GO:0048281: inflorescence morphogenesis1.50E-05
20GO:0002679: respiratory burst involved in defense response3.35E-05
21GO:0048194: Golgi vesicle budding3.35E-05
22GO:0006612: protein targeting to membrane3.35E-05
23GO:0015696: ammonium transport3.35E-05
24GO:0060548: negative regulation of cell death6.01E-05
25GO:0072488: ammonium transmembrane transport6.01E-05
26GO:0010363: regulation of plant-type hypersensitive response6.01E-05
27GO:0009626: plant-type hypersensitive response7.07E-05
28GO:0009751: response to salicylic acid7.77E-05
29GO:0031348: negative regulation of defense response1.72E-04
30GO:0010310: regulation of hydrogen peroxide metabolic process1.88E-04
31GO:0006887: exocytosis2.04E-04
32GO:0051707: response to other organism2.34E-04
33GO:0010044: response to aluminum ion2.45E-04
34GO:0070370: cellular heat acclimation2.45E-04
35GO:0046323: glucose import3.02E-04
36GO:0009968: negative regulation of signal transduction3.04E-04
37GO:0043547: positive regulation of GTPase activity3.04E-04
38GO:0009609: response to symbiotic bacterium3.04E-04
39GO:0055081: anion homeostasis3.04E-04
40GO:1901183: positive regulation of camalexin biosynthetic process3.04E-04
41GO:0006680: glucosylceramide catabolic process3.04E-04
42GO:0006643: membrane lipid metabolic process3.04E-04
43GO:0060862: negative regulation of floral organ abscission3.04E-04
44GO:0050832: defense response to fungus3.19E-04
45GO:0061025: membrane fusion3.33E-04
46GO:0043562: cellular response to nitrogen levels3.80E-04
47GO:2000031: regulation of salicylic acid mediated signaling pathway3.80E-04
48GO:0051865: protein autoubiquitination4.57E-04
49GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.40E-04
50GO:0006904: vesicle docking involved in exocytosis5.53E-04
51GO:0009620: response to fungus5.73E-04
52GO:0002221: pattern recognition receptor signaling pathway6.66E-04
53GO:0046740: transport of virus in host, cell to cell6.66E-04
54GO:2000072: regulation of defense response to fungus, incompatible interaction6.66E-04
55GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.66E-04
56GO:0080185: effector dependent induction by symbiont of host immune response6.66E-04
57GO:0080181: lateral root branching6.66E-04
58GO:0006024: glycosaminoglycan biosynthetic process6.66E-04
59GO:0006212: uracil catabolic process6.66E-04
60GO:0019483: beta-alanine biosynthetic process6.66E-04
61GO:0010541: acropetal auxin transport6.66E-04
62GO:0031349: positive regulation of defense response6.66E-04
63GO:0051252: regulation of RNA metabolic process6.66E-04
64GO:0051258: protein polymerization6.66E-04
65GO:0015012: heparan sulfate proteoglycan biosynthetic process6.66E-04
66GO:0009627: systemic acquired resistance7.38E-04
67GO:0071365: cellular response to auxin stimulus8.31E-04
68GO:0000266: mitochondrial fission8.31E-04
69GO:0010311: lateral root formation9.53E-04
70GO:0034605: cellular response to heat1.06E-03
71GO:0009737: response to abscisic acid1.07E-03
72GO:0072661: protein targeting to plasma membrane1.08E-03
73GO:0006517: protein deglycosylation1.08E-03
74GO:0015695: organic cation transport1.08E-03
75GO:1900140: regulation of seedling development1.08E-03
76GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.08E-03
77GO:0055074: calcium ion homeostasis1.08E-03
78GO:0010167: response to nitrate1.18E-03
79GO:0009863: salicylic acid mediated signaling pathway1.45E-03
80GO:0006515: misfolded or incompletely synthesized protein catabolic process1.55E-03
81GO:0010071: root meristem specification1.55E-03
82GO:0034219: carbohydrate transmembrane transport1.55E-03
83GO:0070301: cellular response to hydrogen peroxide1.55E-03
84GO:0002239: response to oomycetes1.55E-03
85GO:0043207: response to external biotic stimulus1.55E-03
86GO:0009399: nitrogen fixation1.55E-03
87GO:0072583: clathrin-dependent endocytosis1.55E-03
88GO:0010148: transpiration1.55E-03
89GO:0006516: glycoprotein catabolic process1.55E-03
90GO:0016998: cell wall macromolecule catabolic process1.76E-03
91GO:0048278: vesicle docking1.76E-03
92GO:0007166: cell surface receptor signaling pathway1.84E-03
93GO:0009814: defense response, incompatible interaction1.92E-03
94GO:2000022: regulation of jasmonic acid mediated signaling pathway1.92E-03
95GO:0035428: hexose transmembrane transport1.92E-03
96GO:0006542: glutamine biosynthetic process2.07E-03
97GO:0010483: pollen tube reception2.07E-03
98GO:0010600: regulation of auxin biosynthetic process2.07E-03
99GO:0010508: positive regulation of autophagy2.07E-03
100GO:0010188: response to microbial phytotoxin2.07E-03
101GO:0031365: N-terminal protein amino acid modification2.65E-03
102GO:0010225: response to UV-C2.65E-03
103GO:0000304: response to singlet oxygen2.65E-03
104GO:0009697: salicylic acid biosynthetic process2.65E-03
105GO:0046283: anthocyanin-containing compound metabolic process2.65E-03
106GO:0042391: regulation of membrane potential2.67E-03
107GO:0006623: protein targeting to vacuole3.31E-03
108GO:0009749: response to glucose3.31E-03
109GO:0010555: response to mannitol3.93E-03
110GO:2000067: regulation of root morphogenesis3.93E-03
111GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.93E-03
112GO:0000911: cytokinesis by cell plate formation3.93E-03
113GO:0009612: response to mechanical stimulus3.93E-03
114GO:0016192: vesicle-mediated transport4.38E-03
115GO:0044550: secondary metabolite biosynthetic process4.61E-03
116GO:0010161: red light signaling pathway4.64E-03
117GO:0009610: response to symbiotic fungus4.64E-03
118GO:0046470: phosphatidylcholine metabolic process4.64E-03
119GO:0043090: amino acid import4.64E-03
120GO:0071446: cellular response to salicylic acid stimulus4.64E-03
121GO:0001666: response to hypoxia5.13E-03
122GO:0010492: maintenance of shoot apical meristem identity5.39E-03
123GO:0016559: peroxisome fission5.39E-03
124GO:0030162: regulation of proteolysis5.39E-03
125GO:0010078: maintenance of root meristem identity5.39E-03
126GO:0006979: response to oxidative stress5.49E-03
127GO:0006886: intracellular protein transport5.60E-03
128GO:0042128: nitrate assimilation5.72E-03
129GO:0006906: vesicle fusion5.72E-03
130GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.18E-03
131GO:0007186: G-protein coupled receptor signaling pathway6.18E-03
132GO:0010120: camalexin biosynthetic process6.18E-03
133GO:0010497: plasmodesmata-mediated intercellular transport6.18E-03
134GO:0010204: defense response signaling pathway, resistance gene-independent6.18E-03
135GO:0009817: defense response to fungus, incompatible interaction6.69E-03
136GO:0046685: response to arsenic-containing substance7.01E-03
137GO:0009821: alkaloid biosynthetic process7.01E-03
138GO:0010112: regulation of systemic acquired resistance7.01E-03
139GO:0010150: leaf senescence7.61E-03
140GO:0010119: regulation of stomatal movement7.74E-03
141GO:1900426: positive regulation of defense response to bacterium7.87E-03
142GO:2000280: regulation of root development7.87E-03
143GO:0007165: signal transduction8.24E-03
144GO:0009867: jasmonic acid mediated signaling pathway8.49E-03
145GO:0015031: protein transport8.64E-03
146GO:0010215: cellulose microfibril organization8.77E-03
147GO:0006995: cellular response to nitrogen starvation8.77E-03
148GO:0006032: chitin catabolic process8.77E-03
149GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process8.78E-03
150GO:0009750: response to fructose9.71E-03
151GO:0030148: sphingolipid biosynthetic process9.71E-03
152GO:0012501: programmed cell death1.07E-02
153GO:0015706: nitrate transport1.07E-02
154GO:0002213: defense response to insect1.07E-02
155GO:0010105: negative regulation of ethylene-activated signaling pathway1.07E-02
156GO:0006807: nitrogen compound metabolic process1.17E-02
157GO:0002237: response to molecule of bacterial origin1.27E-02
158GO:0007034: vacuolar transport1.27E-02
159GO:0031347: regulation of defense response1.33E-02
160GO:0010053: root epidermal cell differentiation1.38E-02
161GO:0006970: response to osmotic stress1.46E-02
162GO:0006486: protein glycosylation1.48E-02
163GO:0000162: tryptophan biosynthetic process1.49E-02
164GO:0009723: response to ethylene1.60E-02
165GO:0009414: response to water deprivation1.61E-02
166GO:0010073: meristem maintenance1.72E-02
167GO:0006874: cellular calcium ion homeostasis1.72E-02
168GO:0009611: response to wounding1.81E-02
169GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.82E-02
170GO:0046777: protein autophosphorylation1.90E-02
171GO:0071456: cellular response to hypoxia1.96E-02
172GO:0009625: response to insect2.09E-02
173GO:0009624: response to nematode2.11E-02
174GO:0010091: trichome branching2.22E-02
175GO:0042127: regulation of cell proliferation2.22E-02
176GO:0009306: protein secretion2.22E-02
177GO:0009742: brassinosteroid mediated signaling pathway2.24E-02
178GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.35E-02
179GO:0000413: protein peptidyl-prolyl isomerization2.48E-02
180GO:0080022: primary root development2.48E-02
181GO:0010197: polar nucleus fusion2.62E-02
182GO:0010182: sugar mediated signaling pathway2.62E-02
183GO:0008360: regulation of cell shape2.62E-02
184GO:0009058: biosynthetic process2.79E-02
185GO:0006629: lipid metabolic process2.85E-02
186GO:0009845: seed germination2.86E-02
187GO:0008654: phospholipid biosynthetic process2.90E-02
188GO:0009851: auxin biosynthetic process2.90E-02
189GO:0010183: pollen tube guidance2.90E-02
190GO:0002229: defense response to oomycetes3.04E-02
191GO:0006891: intra-Golgi vesicle-mediated transport3.04E-02
192GO:0010193: response to ozone3.04E-02
193GO:0016032: viral process3.19E-02
194GO:0030163: protein catabolic process3.33E-02
195GO:0007623: circadian rhythm3.65E-02
196GO:0051607: defense response to virus3.79E-02
197GO:0000910: cytokinesis3.79E-02
198GO:0009615: response to virus3.95E-02
199GO:0006470: protein dephosphorylation4.17E-02
200GO:0016049: cell growth4.60E-02
201GO:0008219: cell death4.77E-02
202GO:0009813: flavonoid biosynthetic process4.94E-02
RankGO TermAdjusted P value
1GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
2GO:0004168: dolichol kinase activity0.00E+00
3GO:0015576: sorbitol transmembrane transporter activity0.00E+00
4GO:0033759: flavone synthase activity0.00E+00
5GO:0015370: solute:sodium symporter activity0.00E+00
6GO:0003837: beta-ureidopropionase activity0.00E+00
7GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
8GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group0.00E+00
9GO:0015591: D-ribose transmembrane transporter activity0.00E+00
10GO:0015148: D-xylose transmembrane transporter activity0.00E+00
11GO:0015575: mannitol transmembrane transporter activity0.00E+00
12GO:0005516: calmodulin binding1.21E-07
13GO:0016301: kinase activity1.54E-07
14GO:0005524: ATP binding8.21E-07
15GO:0005388: calcium-transporting ATPase activity1.45E-06
16GO:0004012: phospholipid-translocating ATPase activity3.37E-06
17GO:0004713: protein tyrosine kinase activity2.87E-05
18GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism5.64E-05
19GO:0004674: protein serine/threonine kinase activity6.13E-05
20GO:0008519: ammonium transmembrane transporter activity1.37E-04
21GO:0032050: clathrin heavy chain binding3.04E-04
22GO:1901149: salicylic acid binding3.04E-04
23GO:0015085: calcium ion transmembrane transporter activity3.04E-04
24GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity3.04E-04
25GO:0004348: glucosylceramidase activity3.04E-04
26GO:0015168: glycerol transmembrane transporter activity3.04E-04
27GO:0004714: transmembrane receptor protein tyrosine kinase activity3.09E-04
28GO:0005355: glucose transmembrane transporter activity3.33E-04
29GO:0005515: protein binding6.65E-04
30GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity6.66E-04
31GO:0008428: ribonuclease inhibitor activity6.66E-04
32GO:0001671: ATPase activator activity6.66E-04
33GO:0045140: inositol phosphoceramide synthase activity6.66E-04
34GO:0004806: triglyceride lipase activity7.89E-04
35GO:0016595: glutamate binding1.08E-03
36GO:0004049: anthranilate synthase activity1.08E-03
37GO:0001664: G-protein coupled receptor binding1.08E-03
38GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.08E-03
39GO:0031683: G-protein beta/gamma-subunit complex binding1.08E-03
40GO:0004190: aspartic-type endopeptidase activity1.18E-03
41GO:0030552: cAMP binding1.18E-03
42GO:0030553: cGMP binding1.18E-03
43GO:0004712: protein serine/threonine/tyrosine kinase activity1.34E-03
44GO:0004871: signal transducer activity1.35E-03
45GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.35E-03
46GO:0005509: calcium ion binding1.40E-03
47GO:0005354: galactose transmembrane transporter activity1.55E-03
48GO:0005216: ion channel activity1.60E-03
49GO:0005484: SNAP receptor activity1.66E-03
50GO:0033612: receptor serine/threonine kinase binding1.76E-03
51GO:0015204: urea transmembrane transporter activity2.07E-03
52GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.07E-03
53GO:0043495: protein anchor2.07E-03
54GO:0004930: G-protein coupled receptor activity2.07E-03
55GO:0004356: glutamate-ammonia ligase activity2.65E-03
56GO:0015145: monosaccharide transmembrane transporter activity2.65E-03
57GO:0008948: oxaloacetate decarboxylase activity2.65E-03
58GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.65E-03
59GO:0004040: amidase activity2.65E-03
60GO:0005249: voltage-gated potassium channel activity2.67E-03
61GO:0030551: cyclic nucleotide binding2.67E-03
62GO:0004605: phosphatidate cytidylyltransferase activity3.27E-03
63GO:0004672: protein kinase activity3.88E-03
64GO:0008235: metalloexopeptidase activity4.64E-03
65GO:0003843: 1,3-beta-D-glucan synthase activity6.18E-03
66GO:0004630: phospholipase D activity6.18E-03
67GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity6.18E-03
68GO:0015144: carbohydrate transmembrane transporter activity6.34E-03
69GO:0071949: FAD binding7.01E-03
70GO:0005351: sugar:proton symporter activity7.39E-03
71GO:0016844: strictosidine synthase activity7.87E-03
72GO:0015112: nitrate transmembrane transporter activity7.87E-03
73GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors8.49E-03
74GO:0004568: chitinase activity8.77E-03
75GO:0000149: SNARE binding9.27E-03
76GO:0004177: aminopeptidase activity9.71E-03
77GO:0005543: phospholipid binding9.71E-03
78GO:0046872: metal ion binding1.09E-02
79GO:0031072: heat shock protein binding1.17E-02
80GO:0005262: calcium channel activity1.17E-02
81GO:0015293: symporter activity1.23E-02
82GO:0000287: magnesium ion binding1.30E-02
83GO:0005217: intracellular ligand-gated ion channel activity1.38E-02
84GO:0008061: chitin binding1.38E-02
85GO:0003712: transcription cofactor activity1.38E-02
86GO:0004970: ionotropic glutamate receptor activity1.38E-02
87GO:0051119: sugar transmembrane transporter activity1.38E-02
88GO:0016298: lipase activity1.53E-02
89GO:0003954: NADH dehydrogenase activity1.60E-02
90GO:0031625: ubiquitin protein ligase binding1.64E-02
91GO:0051087: chaperone binding1.72E-02
92GO:0043424: protein histidine kinase binding1.72E-02
93GO:0051082: unfolded protein binding2.11E-02
94GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.41E-02
95GO:0001085: RNA polymerase II transcription factor binding2.62E-02
96GO:0010181: FMN binding2.76E-02
97GO:0004842: ubiquitin-protein transferase activity2.90E-02
98GO:0019825: oxygen binding2.95E-02
99GO:0008565: protein transporter activity3.17E-02
100GO:0016722: oxidoreductase activity, oxidizing metal ions3.64E-02
101GO:0051213: dioxygenase activity3.95E-02
102GO:0009931: calcium-dependent protein serine/threonine kinase activity4.27E-02
103GO:0004683: calmodulin-dependent protein kinase activity4.44E-02
104GO:0016798: hydrolase activity, acting on glycosyl bonds4.44E-02
105GO:0004721: phosphoprotein phosphatase activity4.44E-02
106GO:0005506: iron ion binding4.79E-02
107GO:0016887: ATPase activity4.88E-02
108GO:0005096: GTPase activator activity4.94E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.23E-26
2GO:0016021: integral component of membrane5.66E-09
3GO:0005887: integral component of plasma membrane4.06E-07
4GO:0009506: plasmodesma6.61E-06
5GO:0070062: extracellular exosome3.35E-05
6GO:0009504: cell plate3.65E-04
7GO:0017119: Golgi transport complex6.31E-04
8GO:0005950: anthranilate synthase complex6.66E-04
9GO:0031304: intrinsic component of mitochondrial inner membrane6.66E-04
10GO:0005901: caveola6.66E-04
11GO:0030658: transport vesicle membrane1.55E-03
12GO:0005802: trans-Golgi network3.41E-03
13GO:0000145: exocyst3.79E-03
14GO:0005773: vacuole4.54E-03
15GO:0000148: 1,3-beta-D-glucan synthase complex6.18E-03
16GO:0019005: SCF ubiquitin ligase complex6.69E-03
17GO:0016020: membrane7.38E-03
18GO:0030665: clathrin-coated vesicle membrane7.87E-03
19GO:0030125: clathrin vesicle coat8.77E-03
20GO:0005783: endoplasmic reticulum9.46E-03
21GO:0005774: vacuolar membrane9.65E-03
22GO:0031201: SNARE complex1.01E-02
23GO:0031902: late endosome membrane1.01E-02
24GO:0005789: endoplasmic reticulum membrane1.23E-02
25GO:0005795: Golgi stack1.38E-02
26GO:0030176: integral component of endoplasmic reticulum membrane1.38E-02
27GO:0005741: mitochondrial outer membrane1.84E-02
28GO:0009524: phragmoplast2.79E-02
29GO:0019898: extrinsic component of membrane2.90E-02
30GO:0031225: anchored component of membrane3.37E-02
31GO:0005778: peroxisomal membrane3.64E-02
32GO:0005788: endoplasmic reticulum lumen4.11E-02
33GO:0005667: transcription factor complex4.27E-02
34GO:0000151: ubiquitin ligase complex4.77E-02
35GO:0046658: anchored component of plasma membrane4.81E-02
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Gene type



Gene DE type