GO Enrichment Analysis of Co-expressed Genes with
AT3G12685
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 6 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 7 | GO:0006223: uracil salvage | 0.00E+00 |
| 8 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 9 | GO:0006412: translation | 4.31E-12 |
| 10 | GO:0042254: ribosome biogenesis | 5.15E-11 |
| 11 | GO:0032544: plastid translation | 4.61E-10 |
| 12 | GO:0090391: granum assembly | 1.69E-08 |
| 13 | GO:0015995: chlorophyll biosynthetic process | 5.93E-08 |
| 14 | GO:0010027: thylakoid membrane organization | 1.26E-06 |
| 15 | GO:0009658: chloroplast organization | 4.55E-06 |
| 16 | GO:0015979: photosynthesis | 1.39E-05 |
| 17 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.66E-05 |
| 18 | GO:0010207: photosystem II assembly | 4.06E-05 |
| 19 | GO:0031365: N-terminal protein amino acid modification | 6.46E-05 |
| 20 | GO:1901259: chloroplast rRNA processing | 1.30E-04 |
| 21 | GO:0010196: nonphotochemical quenching | 1.72E-04 |
| 22 | GO:0042371: vitamin K biosynthetic process | 2.41E-04 |
| 23 | GO:0043686: co-translational protein modification | 2.41E-04 |
| 24 | GO:0034337: RNA folding | 2.41E-04 |
| 25 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.41E-04 |
| 26 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.41E-04 |
| 27 | GO:1904964: positive regulation of phytol biosynthetic process | 2.41E-04 |
| 28 | GO:0006783: heme biosynthetic process | 3.27E-04 |
| 29 | GO:0006529: asparagine biosynthetic process | 5.34E-04 |
| 30 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.34E-04 |
| 31 | GO:0006568: tryptophan metabolic process | 5.34E-04 |
| 32 | GO:0080040: positive regulation of cellular response to phosphate starvation | 5.34E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.34E-04 |
| 34 | GO:0070981: L-asparagine biosynthetic process | 5.34E-04 |
| 35 | GO:0009735: response to cytokinin | 5.72E-04 |
| 36 | GO:0006760: folic acid-containing compound metabolic process | 8.68E-04 |
| 37 | GO:0015714: phosphoenolpyruvate transport | 8.68E-04 |
| 38 | GO:0006954: inflammatory response | 8.68E-04 |
| 39 | GO:0006518: peptide metabolic process | 8.68E-04 |
| 40 | GO:0051604: protein maturation | 8.68E-04 |
| 41 | GO:0071492: cellular response to UV-A | 8.68E-04 |
| 42 | GO:0019344: cysteine biosynthetic process | 1.05E-03 |
| 43 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.24E-03 |
| 44 | GO:2001141: regulation of RNA biosynthetic process | 1.24E-03 |
| 45 | GO:0006241: CTP biosynthetic process | 1.24E-03 |
| 46 | GO:0006165: nucleoside diphosphate phosphorylation | 1.24E-03 |
| 47 | GO:0006228: UTP biosynthetic process | 1.24E-03 |
| 48 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.24E-03 |
| 49 | GO:0010037: response to carbon dioxide | 1.65E-03 |
| 50 | GO:0015976: carbon utilization | 1.65E-03 |
| 51 | GO:0071486: cellular response to high light intensity | 1.65E-03 |
| 52 | GO:0006183: GTP biosynthetic process | 1.65E-03 |
| 53 | GO:0015713: phosphoglycerate transport | 1.65E-03 |
| 54 | GO:0044206: UMP salvage | 1.65E-03 |
| 55 | GO:2000122: negative regulation of stomatal complex development | 1.65E-03 |
| 56 | GO:0046656: folic acid biosynthetic process | 1.65E-03 |
| 57 | GO:0006021: inositol biosynthetic process | 1.65E-03 |
| 58 | GO:0042335: cuticle development | 1.91E-03 |
| 59 | GO:0006665: sphingolipid metabolic process | 2.11E-03 |
| 60 | GO:0043097: pyrimidine nucleoside salvage | 2.11E-03 |
| 61 | GO:0010236: plastoquinone biosynthetic process | 2.11E-03 |
| 62 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.60E-03 |
| 63 | GO:0006206: pyrimidine nucleobase metabolic process | 2.60E-03 |
| 64 | GO:0032973: amino acid export | 2.60E-03 |
| 65 | GO:0046855: inositol phosphate dephosphorylation | 2.60E-03 |
| 66 | GO:0010190: cytochrome b6f complex assembly | 2.60E-03 |
| 67 | GO:0009117: nucleotide metabolic process | 2.60E-03 |
| 68 | GO:0032502: developmental process | 2.71E-03 |
| 69 | GO:0010019: chloroplast-nucleus signaling pathway | 3.12E-03 |
| 70 | GO:0010555: response to mannitol | 3.12E-03 |
| 71 | GO:0009955: adaxial/abaxial pattern specification | 3.12E-03 |
| 72 | GO:0042372: phylloquinone biosynthetic process | 3.12E-03 |
| 73 | GO:0046654: tetrahydrofolate biosynthetic process | 3.12E-03 |
| 74 | GO:0045454: cell redox homeostasis | 3.18E-03 |
| 75 | GO:0009772: photosynthetic electron transport in photosystem II | 3.68E-03 |
| 76 | GO:0043090: amino acid import | 3.68E-03 |
| 77 | GO:0006400: tRNA modification | 3.68E-03 |
| 78 | GO:0009642: response to light intensity | 4.27E-03 |
| 79 | GO:0042255: ribosome assembly | 4.27E-03 |
| 80 | GO:0006353: DNA-templated transcription, termination | 4.27E-03 |
| 81 | GO:0017004: cytochrome complex assembly | 4.89E-03 |
| 82 | GO:0071482: cellular response to light stimulus | 4.89E-03 |
| 83 | GO:0009657: plastid organization | 4.89E-03 |
| 84 | GO:0009245: lipid A biosynthetic process | 5.54E-03 |
| 85 | GO:0080144: amino acid homeostasis | 5.54E-03 |
| 86 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.21E-03 |
| 87 | GO:0042761: very long-chain fatty acid biosynthetic process | 6.21E-03 |
| 88 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 6.92E-03 |
| 89 | GO:0006535: cysteine biosynthetic process from serine | 6.92E-03 |
| 90 | GO:0009773: photosynthetic electron transport in photosystem I | 7.65E-03 |
| 91 | GO:0006415: translational termination | 7.65E-03 |
| 92 | GO:0019684: photosynthesis, light reaction | 7.65E-03 |
| 93 | GO:0043085: positive regulation of catalytic activity | 7.65E-03 |
| 94 | GO:0006352: DNA-templated transcription, initiation | 7.65E-03 |
| 95 | GO:0006790: sulfur compound metabolic process | 8.41E-03 |
| 96 | GO:0008643: carbohydrate transport | 8.43E-03 |
| 97 | GO:0009767: photosynthetic electron transport chain | 9.20E-03 |
| 98 | GO:0010628: positive regulation of gene expression | 9.20E-03 |
| 99 | GO:0006541: glutamine metabolic process | 1.00E-02 |
| 100 | GO:0010020: chloroplast fission | 1.00E-02 |
| 101 | GO:0046854: phosphatidylinositol phosphorylation | 1.09E-02 |
| 102 | GO:0010167: response to nitrate | 1.09E-02 |
| 103 | GO:0019853: L-ascorbic acid biosynthetic process | 1.09E-02 |
| 104 | GO:0080167: response to karrikin | 1.13E-02 |
| 105 | GO:0010025: wax biosynthetic process | 1.17E-02 |
| 106 | GO:0009116: nucleoside metabolic process | 1.26E-02 |
| 107 | GO:0000027: ribosomal large subunit assembly | 1.26E-02 |
| 108 | GO:0061077: chaperone-mediated protein folding | 1.45E-02 |
| 109 | GO:0016114: terpenoid biosynthetic process | 1.45E-02 |
| 110 | GO:0006012: galactose metabolic process | 1.64E-02 |
| 111 | GO:0009411: response to UV | 1.64E-02 |
| 112 | GO:0010091: trichome branching | 1.74E-02 |
| 113 | GO:0009306: protein secretion | 1.74E-02 |
| 114 | GO:0000413: protein peptidyl-prolyl isomerization | 1.95E-02 |
| 115 | GO:0009741: response to brassinosteroid | 2.05E-02 |
| 116 | GO:0006662: glycerol ether metabolic process | 2.05E-02 |
| 117 | GO:0009646: response to absence of light | 2.16E-02 |
| 118 | GO:0016036: cellular response to phosphate starvation | 2.42E-02 |
| 119 | GO:0010583: response to cyclopentenone | 2.50E-02 |
| 120 | GO:1901657: glycosyl compound metabolic process | 2.62E-02 |
| 121 | GO:0009567: double fertilization forming a zygote and endosperm | 2.73E-02 |
| 122 | GO:0009627: systemic acquired resistance | 3.35E-02 |
| 123 | GO:0042128: nitrate assimilation | 3.35E-02 |
| 124 | GO:0018298: protein-chromophore linkage | 3.75E-02 |
| 125 | GO:0009416: response to light stimulus | 3.80E-02 |
| 126 | GO:0010119: regulation of stomatal movement | 4.15E-02 |
| 127 | GO:0015031: protein transport | 4.24E-02 |
| 128 | GO:0009637: response to blue light | 4.43E-02 |
| 129 | GO:0034599: cellular response to oxidative stress | 4.57E-02 |
| 130 | GO:0030001: metal ion transport | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 2 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 3 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 4 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 5 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 6 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 7 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 8 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 9 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
| 10 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 11 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 12 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 13 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 14 | GO:0019843: rRNA binding | 4.85E-16 |
| 15 | GO:0003735: structural constituent of ribosome | 5.98E-14 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.72E-04 |
| 17 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.41E-04 |
| 18 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.41E-04 |
| 19 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.41E-04 |
| 20 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.41E-04 |
| 21 | GO:0004560: alpha-L-fucosidase activity | 2.41E-04 |
| 22 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.41E-04 |
| 23 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 2.41E-04 |
| 24 | GO:0004071: aspartate-ammonia ligase activity | 2.41E-04 |
| 25 | GO:0042586: peptide deformylase activity | 2.41E-04 |
| 26 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.41E-04 |
| 27 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 5.34E-04 |
| 28 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.34E-04 |
| 29 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.34E-04 |
| 30 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.34E-04 |
| 31 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 5.34E-04 |
| 32 | GO:0004150: dihydroneopterin aldolase activity | 5.34E-04 |
| 33 | GO:0070402: NADPH binding | 8.68E-04 |
| 34 | GO:0004148: dihydrolipoyl dehydrogenase activity | 8.68E-04 |
| 35 | GO:0004751: ribose-5-phosphate isomerase activity | 8.68E-04 |
| 36 | GO:0005528: FK506 binding | 1.05E-03 |
| 37 | GO:0008097: 5S rRNA binding | 1.24E-03 |
| 38 | GO:0035529: NADH pyrophosphatase activity | 1.24E-03 |
| 39 | GO:0016149: translation release factor activity, codon specific | 1.24E-03 |
| 40 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 1.24E-03 |
| 41 | GO:0004550: nucleoside diphosphate kinase activity | 1.24E-03 |
| 42 | GO:0022891: substrate-specific transmembrane transporter activity | 1.51E-03 |
| 43 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.65E-03 |
| 44 | GO:0004659: prenyltransferase activity | 1.65E-03 |
| 45 | GO:0001053: plastid sigma factor activity | 1.65E-03 |
| 46 | GO:0004845: uracil phosphoribosyltransferase activity | 1.65E-03 |
| 47 | GO:0016987: sigma factor activity | 1.65E-03 |
| 48 | GO:0043495: protein anchor | 1.65E-03 |
| 49 | GO:0009922: fatty acid elongase activity | 2.11E-03 |
| 50 | GO:0004040: amidase activity | 2.11E-03 |
| 51 | GO:0015035: protein disulfide oxidoreductase activity | 2.56E-03 |
| 52 | GO:0080030: methyl indole-3-acetate esterase activity | 2.60E-03 |
| 53 | GO:0031177: phosphopantetheine binding | 2.60E-03 |
| 54 | GO:0016462: pyrophosphatase activity | 2.60E-03 |
| 55 | GO:0004124: cysteine synthase activity | 3.12E-03 |
| 56 | GO:0051920: peroxiredoxin activity | 3.12E-03 |
| 57 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.12E-03 |
| 58 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.12E-03 |
| 59 | GO:0004849: uridine kinase activity | 3.12E-03 |
| 60 | GO:0000035: acyl binding | 3.12E-03 |
| 61 | GO:0008235: metalloexopeptidase activity | 3.68E-03 |
| 62 | GO:0019899: enzyme binding | 3.68E-03 |
| 63 | GO:0016168: chlorophyll binding | 3.87E-03 |
| 64 | GO:0016209: antioxidant activity | 4.27E-03 |
| 65 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.27E-03 |
| 66 | GO:0004034: aldose 1-epimerase activity | 4.27E-03 |
| 67 | GO:0004033: aldo-keto reductase (NADP) activity | 4.27E-03 |
| 68 | GO:0004222: metalloendopeptidase activity | 5.26E-03 |
| 69 | GO:0003747: translation release factor activity | 5.54E-03 |
| 70 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 5.54E-03 |
| 71 | GO:0051539: 4 iron, 4 sulfur cluster binding | 6.89E-03 |
| 72 | GO:0008047: enzyme activator activity | 6.92E-03 |
| 73 | GO:0004177: aminopeptidase activity | 7.65E-03 |
| 74 | GO:0008794: arsenate reductase (glutaredoxin) activity | 7.65E-03 |
| 75 | GO:0051537: 2 iron, 2 sulfur cluster binding | 8.43E-03 |
| 76 | GO:0016788: hydrolase activity, acting on ester bonds | 8.82E-03 |
| 77 | GO:0004089: carbonate dehydratase activity | 9.20E-03 |
| 78 | GO:0031072: heat shock protein binding | 9.20E-03 |
| 79 | GO:0051119: sugar transmembrane transporter activity | 1.09E-02 |
| 80 | GO:0004650: polygalacturonase activity | 1.37E-02 |
| 81 | GO:0003727: single-stranded RNA binding | 1.74E-02 |
| 82 | GO:0008514: organic anion transmembrane transporter activity | 1.74E-02 |
| 83 | GO:0047134: protein-disulfide reductase activity | 1.84E-02 |
| 84 | GO:0009055: electron carrier activity | 2.03E-02 |
| 85 | GO:0008080: N-acetyltransferase activity | 2.05E-02 |
| 86 | GO:0030170: pyridoxal phosphate binding | 2.09E-02 |
| 87 | GO:0004791: thioredoxin-disulfide reductase activity | 2.16E-02 |
| 88 | GO:0016853: isomerase activity | 2.16E-02 |
| 89 | GO:0015297: antiporter activity | 2.48E-02 |
| 90 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.62E-02 |
| 91 | GO:0005509: calcium ion binding | 2.66E-02 |
| 92 | GO:0008483: transaminase activity | 2.85E-02 |
| 93 | GO:0008237: metallopeptidase activity | 2.85E-02 |
| 94 | GO:0042802: identical protein binding | 3.30E-02 |
| 95 | GO:0102483: scopolin beta-glucosidase activity | 3.48E-02 |
| 96 | GO:0008236: serine-type peptidase activity | 3.61E-02 |
| 97 | GO:0004601: peroxidase activity | 4.01E-02 |
| 98 | GO:0008422: beta-glucosidase activity | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 1.23E-62 |
| 5 | GO:0009570: chloroplast stroma | 1.31E-41 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 8.08E-32 |
| 7 | GO:0009941: chloroplast envelope | 8.31E-28 |
| 8 | GO:0009579: thylakoid | 3.02E-20 |
| 9 | GO:0005840: ribosome | 5.14E-19 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 4.85E-16 |
| 11 | GO:0031977: thylakoid lumen | 6.61E-12 |
| 12 | GO:0009534: chloroplast thylakoid | 4.18E-10 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 4.54E-08 |
| 14 | GO:0019898: extrinsic component of membrane | 1.27E-05 |
| 15 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.41E-04 |
| 16 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.41E-04 |
| 17 | GO:0009923: fatty acid elongase complex | 2.41E-04 |
| 18 | GO:0031969: chloroplast membrane | 5.00E-04 |
| 19 | GO:0030095: chloroplast photosystem II | 7.67E-04 |
| 20 | GO:0009509: chromoplast | 8.68E-04 |
| 21 | GO:0033281: TAT protein transport complex | 8.68E-04 |
| 22 | GO:0042651: thylakoid membrane | 1.16E-03 |
| 23 | GO:0015935: small ribosomal subunit | 1.27E-03 |
| 24 | GO:0009526: plastid envelope | 1.65E-03 |
| 25 | GO:0055035: plastid thylakoid membrane | 2.11E-03 |
| 26 | GO:0009523: photosystem II | 2.37E-03 |
| 27 | GO:0009533: chloroplast stromal thylakoid | 3.68E-03 |
| 28 | GO:0009536: plastid | 4.12E-03 |
| 29 | GO:0048046: apoplast | 4.85E-03 |
| 30 | GO:0009539: photosystem II reaction center | 4.89E-03 |
| 31 | GO:0015934: large ribosomal subunit | 5.51E-03 |
| 32 | GO:0005763: mitochondrial small ribosomal subunit | 5.54E-03 |
| 33 | GO:0032040: small-subunit processome | 8.41E-03 |
| 34 | GO:0009508: plastid chromosome | 9.20E-03 |
| 35 | GO:0009532: plastid stroma | 1.45E-02 |
| 36 | GO:0009295: nucleoid | 2.85E-02 |
| 37 | GO:0046658: anchored component of plasma membrane | 3.44E-02 |
| 38 | GO:0022626: cytosolic ribosome | 3.60E-02 |
| 39 | GO:0009707: chloroplast outer membrane | 3.75E-02 |