co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
7	GO:0090042: tubulin deacetylation	0.00E+00
8	GO:0010371: regulation of gibberellin biosynthetic process	6.29E-06
9	GO:0043266: regulation of potassium ion transport	1.18E-04
10	GO:0031338: regulation of vesicle fusion	1.18E-04
11	GO:2000021: regulation of ion homeostasis	1.18E-04
12	GO:0006430: lysyl-tRNA aminoacylation	1.18E-04
13	GO:0045717: negative regulation of fatty acid biosynthetic process	2.73E-04
14	GO:0010289: homogalacturonan biosynthetic process	2.73E-04
15	GO:0010270: photosystem II oxygen evolving complex assembly	2.73E-04
16	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.73E-04
17	GO:0048768: root hair cell tip growth	2.87E-04
18	GO:0010020: chloroplast fission	2.87E-04
19	GO:0090630: activation of GTPase activity	4.52E-04
20	GO:0043572: plastid fission	6.47E-04
21	GO:0042989: sequestering of actin monomers	6.47E-04
22	GO:0016556: mRNA modification	6.47E-04
23	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	8.60E-04
24	GO:0010021: amylopectin biosynthetic process	8.60E-04
25	GO:0031122: cytoplasmic microtubule organization	8.60E-04
26	GO:0030041: actin filament polymerization	1.08E-03
27	GO:0048497: maintenance of floral organ identity	1.08E-03
28	GO:0016120: carotene biosynthetic process	1.08E-03
29	GO:0045487: gibberellin catabolic process	1.08E-03
30	GO:0000304: response to singlet oxygen	1.08E-03
31	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.33E-03
32	GO:0016554: cytidine to uridine editing	1.33E-03
33	GO:0006828: manganese ion transport	1.33E-03
34	GO:0009913: epidermal cell differentiation	1.33E-03
35	GO:0006655: phosphatidylglycerol biosynthetic process	1.33E-03
36	GO:0006458: 'de novo' protein folding	1.59E-03
37	GO:0042026: protein refolding	1.59E-03
38	GO:0015995: chlorophyll biosynthetic process	1.60E-03
39	GO:0051510: regulation of unidimensional cell growth	1.87E-03
40	GO:0008610: lipid biosynthetic process	2.16E-03
41	GO:0009658: chloroplast organization	2.39E-03
42	GO:0032544: plastid translation	2.46E-03
43	GO:0071482: cellular response to light stimulus	2.46E-03
44	GO:0009657: plastid organization	2.46E-03
45	GO:0000373: Group II intron splicing	2.78E-03
46	GO:0010206: photosystem II repair	2.78E-03
47	GO:0006779: porphyrin-containing compound biosynthetic process	3.12E-03
48	GO:1900865: chloroplast RNA modification	3.12E-03
49	GO:0006782: protoporphyrinogen IX biosynthetic process	3.46E-03
50	GO:0019538: protein metabolic process	3.46E-03
51	GO:1903507: negative regulation of nucleic acid-templated transcription	3.82E-03
52	GO:0046856: phosphatidylinositol dephosphorylation	3.82E-03
53	GO:0006816: calcium ion transport	3.82E-03
54	GO:0008285: negative regulation of cell proliferation	3.82E-03
55	GO:0006415: translational termination	3.82E-03
56	GO:0016024: CDP-diacylglycerol biosynthetic process	4.19E-03
57	GO:0071732: cellular response to nitric oxide	5.37E-03
58	GO:0090351: seedling development	5.37E-03
59	GO:0007010: cytoskeleton organization	6.22E-03
60	GO:0010073: meristem maintenance	6.66E-03
61	GO:0008299: isoprenoid biosynthetic process	6.66E-03
62	GO:0016575: histone deacetylation	6.66E-03
63	GO:0006418: tRNA aminoacylation for protein translation	6.66E-03
64	GO:0016998: cell wall macromolecule catabolic process	7.11E-03
65	GO:0061077: chaperone-mediated protein folding	7.11E-03
66	GO:0031408: oxylipin biosynthetic process	7.11E-03
67	GO:0009845: seed germination	7.39E-03
68	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.57E-03
69	GO:0035428: hexose transmembrane transport	7.57E-03
70	GO:0071369: cellular response to ethylene stimulus	8.05E-03
71	GO:0010227: floral organ abscission	8.05E-03
72	GO:0016117: carotenoid biosynthetic process	9.02E-03
73	GO:0000413: protein peptidyl-prolyl isomerization	9.53E-03
74	GO:0046323: glucose import	1.00E-02
75	GO:0006814: sodium ion transport	1.06E-02
76	GO:0048825: cotyledon development	1.11E-02
77	GO:0019252: starch biosynthetic process	1.11E-02
78	GO:0071554: cell wall organization or biogenesis	1.16E-02
79	GO:1901657: glycosyl compound metabolic process	1.28E-02
80	GO:0071281: cellular response to iron ion	1.28E-02
81	GO:0010027: thylakoid membrane organization	1.51E-02
82	GO:0016126: sterol biosynthetic process	1.51E-02
83	GO:0010411: xyloglucan metabolic process	1.70E-02
84	GO:0018298: protein-chromophore linkage	1.82E-02
85	GO:0009817: defense response to fungus, incompatible interaction	1.82E-02
86	GO:0048481: plant ovule development	1.82E-02
87	GO:0048527: lateral root development	2.02E-02
88	GO:0015979: photosynthesis	2.07E-02
89	GO:0016051: carbohydrate biosynthetic process	2.16E-02
90	GO:0006839: mitochondrial transport	2.37E-02
91	GO:0009640: photomorphogenesis	2.59E-02
92	GO:0016042: lipid catabolic process	2.61E-02
93	GO:0042546: cell wall biogenesis	2.66E-02
94	GO:0031347: regulation of defense response	2.96E-02
95	GO:0006812: cation transport	3.04E-02
96	GO:0042538: hyperosmotic salinity response	3.04E-02
97	GO:0006364: rRNA processing	3.20E-02
98	GO:0006508: proteolysis	3.50E-02
99	GO:0048316: seed development	3.68E-02
100	GO:0042545: cell wall modification	4.02E-02
101	GO:0009624: response to nematode	4.11E-02
102	GO:0006810: transport	4.18E-02
103	GO:0006396: RNA processing	4.19E-02
104	GO:0005975: carbohydrate metabolic process	4.35E-02
105	GO:0046686: response to cadmium ion	4.49E-02
106	GO:0009611: response to wounding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
2	GO:0043014: alpha-tubulin binding	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0051721: protein phosphatase 2A binding	0.00E+00
5	GO:0042903: tubulin deacetylase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0004163: diphosphomevalonate decarboxylase activity	1.18E-04
8	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.18E-04
9	GO:0005227: calcium activated cation channel activity	1.18E-04
10	GO:0004824: lysine-tRNA ligase activity	1.18E-04
11	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.18E-04
12	GO:0004856: xylulokinase activity	1.18E-04
13	GO:0008568: microtubule-severing ATPase activity	1.18E-04
14	GO:0033201: alpha-1,4-glucan synthase activity	2.73E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.73E-04
16	GO:0030267: glyoxylate reductase (NADP) activity	4.52E-04
17	GO:0070402: NADPH binding	4.52E-04
18	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	4.52E-04
19	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	4.52E-04
20	GO:0004373: glycogen (starch) synthase activity	4.52E-04
21	GO:0003913: DNA photolyase activity	4.52E-04
22	GO:0004176: ATP-dependent peptidase activity	4.85E-04
23	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	6.47E-04
24	GO:0048487: beta-tubulin binding	6.47E-04
25	GO:0016149: translation release factor activity, codon specific	6.47E-04
26	GO:0043023: ribosomal large subunit binding	6.47E-04
27	GO:0008508: bile acid:sodium symporter activity	6.47E-04
28	GO:0004445: inositol-polyphosphate 5-phosphatase activity	6.47E-04
29	GO:0009011: starch synthase activity	8.60E-04
30	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.08E-03
31	GO:0017137: Rab GTPase binding	1.08E-03
32	GO:0003785: actin monomer binding	1.08E-03
33	GO:0008237: metallopeptidase activity	1.22E-03
34	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.33E-03
35	GO:0042578: phosphoric ester hydrolase activity	1.33E-03
36	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.33E-03
37	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.59E-03
38	GO:0015631: tubulin binding	1.59E-03
39	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.59E-03
40	GO:0009881: photoreceptor activity	1.87E-03
41	GO:0043022: ribosome binding	2.16E-03
42	GO:0004033: aldo-keto reductase (NADP) activity	2.16E-03
43	GO:0016788: hydrolase activity, acting on ester bonds	2.45E-03
44	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.46E-03
45	GO:0003747: translation release factor activity	2.78E-03
46	GO:0047617: acyl-CoA hydrolase activity	3.12E-03
47	GO:0005384: manganese ion transmembrane transporter activity	3.12E-03
48	GO:0044183: protein binding involved in protein folding	3.82E-03
49	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.19E-03
50	GO:0015095: magnesium ion transmembrane transporter activity	4.57E-03
51	GO:0004407: histone deacetylase activity	6.22E-03
52	GO:0003714: transcription corepressor activity	6.22E-03
53	GO:0043424: protein histidine kinase binding	6.66E-03
54	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.01E-03
55	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	7.57E-03
56	GO:0016887: ATPase activity	8.96E-03
57	GO:0004812: aminoacyl-tRNA ligase activity	9.02E-03
58	GO:0050662: coenzyme binding	1.06E-02
59	GO:0016853: isomerase activity	1.06E-02
60	GO:0005355: glucose transmembrane transporter activity	1.06E-02
61	GO:0019901: protein kinase binding	1.11E-02
62	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.16E-02
63	GO:0016413: O-acetyltransferase activity	1.45E-02
64	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.70E-02
65	GO:0102483: scopolin beta-glucosidase activity	1.70E-02
66	GO:0004721: phosphoprotein phosphatase activity	1.70E-02
67	GO:0008236: serine-type peptidase activity	1.76E-02
68	GO:0004497: monooxygenase activity	1.82E-02
69	GO:0005096: GTPase activator activity	1.89E-02
70	GO:0004222: metalloendopeptidase activity	1.96E-02
71	GO:0052689: carboxylic ester hydrolase activity	2.01E-02
72	GO:0030145: manganese ion binding	2.02E-02
73	GO:0016787: hydrolase activity	2.06E-02
74	GO:0042803: protein homodimerization activity	2.28E-02
75	GO:0008422: beta-glucosidase activity	2.30E-02
76	GO:0043565: sequence-specific DNA binding	2.66E-02
77	GO:0043621: protein self-association	2.73E-02
78	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.88E-02
79	GO:0004519: endonuclease activity	2.92E-02
80	GO:0045330: aspartyl esterase activity	3.44E-02
81	GO:0016491: oxidoreductase activity	3.66E-02
82	GO:0008289: lipid binding	3.73E-02
83	GO:0030599: pectinesterase activity	3.94E-02
84	GO:0003779: actin binding	4.02E-02
85	GO:0051082: unfolded protein binding	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.87E-23
2	GO:0009570: chloroplast stroma	2.09E-09
3	GO:0009941: chloroplast envelope	1.71E-07
4	GO:0031969: chloroplast membrane	6.73E-05
5	GO:0010287: plastoglobule	9.51E-05
6	GO:0009535: chloroplast thylakoid membrane	1.11E-04
7	GO:0009534: chloroplast thylakoid	1.14E-04
8	GO:0009536: plastid	5.49E-04
9	GO:0009579: thylakoid	6.29E-04
10	GO:0009706: chloroplast inner membrane	7.02E-04
11	GO:0009533: chloroplast stromal thylakoid	1.87E-03
12	GO:0009501: amyloplast	2.16E-03
13	GO:0031977: thylakoid lumen	2.64E-03
14	GO:0005938: cell cortex	4.57E-03
15	GO:0043234: protein complex	5.79E-03
16	GO:0009543: chloroplast thylakoid lumen	6.83E-03
17	GO:0015629: actin cytoskeleton	8.05E-03
18	GO:0012505: endomembrane system	4.02E-02