Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G12150

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:1901698: response to nitrogen compound0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0015979: photosynthesis4.93E-07
11GO:0009773: photosynthetic electron transport in photosystem I2.91E-06
12GO:0042549: photosystem II stabilization5.56E-06
13GO:0034755: iron ion transmembrane transport9.20E-06
14GO:0015995: chlorophyll biosynthetic process2.07E-05
15GO:0010206: photosystem II repair4.31E-05
16GO:0034220: ion transmembrane transport5.25E-05
17GO:0080170: hydrogen peroxide transmembrane transport6.81E-05
18GO:0006546: glycine catabolic process1.19E-04
19GO:0010207: photosystem II assembly1.65E-04
20GO:0006833: water transport2.28E-04
21GO:0006810: transport2.38E-04
22GO:0009735: response to cytokinin3.15E-04
23GO:0010019: chloroplast-nucleus signaling pathway3.49E-04
24GO:0010450: inflorescence meristem growth4.56E-04
25GO:0071588: hydrogen peroxide mediated signaling pathway4.56E-04
26GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.56E-04
27GO:0000476: maturation of 4.5S rRNA4.56E-04
28GO:0000967: rRNA 5'-end processing4.56E-04
29GO:0070509: calcium ion import4.56E-04
30GO:0007263: nitric oxide mediated signal transduction4.56E-04
31GO:0010480: microsporocyte differentiation4.56E-04
32GO:0006824: cobalt ion transport4.56E-04
33GO:0000481: maturation of 5S rRNA4.56E-04
34GO:0033206: meiotic cytokinesis4.56E-04
35GO:0034628: 'de novo' NAD biosynthetic process from aspartate4.56E-04
36GO:0034337: RNA folding4.56E-04
37GO:0008152: metabolic process4.73E-04
38GO:0010114: response to red light6.09E-04
39GO:0009657: plastid organization6.84E-04
40GO:0009644: response to high light intensity6.87E-04
41GO:0009638: phototropism9.64E-04
42GO:0030388: fructose 1,6-bisphosphate metabolic process9.85E-04
43GO:0034470: ncRNA processing9.85E-04
44GO:0016560: protein import into peroxisome matrix, docking9.85E-04
45GO:1900871: chloroplast mRNA modification9.85E-04
46GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.85E-04
47GO:0006521: regulation of cellular amino acid metabolic process9.85E-04
48GO:0015706: nitrate transport1.48E-03
49GO:0006000: fructose metabolic process1.60E-03
50GO:0006518: peptide metabolic process1.60E-03
51GO:0006013: mannose metabolic process1.60E-03
52GO:0006696: ergosterol biosynthetic process1.60E-03
53GO:0051176: positive regulation of sulfur metabolic process1.60E-03
54GO:0071705: nitrogen compound transport1.60E-03
55GO:0045493: xylan catabolic process1.60E-03
56GO:2001295: malonyl-CoA biosynthetic process1.60E-03
57GO:0045165: cell fate commitment1.60E-03
58GO:0009718: anthocyanin-containing compound biosynthetic process1.68E-03
59GO:0018298: protein-chromophore linkage1.91E-03
60GO:0010167: response to nitrate2.13E-03
61GO:0010218: response to far red light2.16E-03
62GO:0034059: response to anoxia2.32E-03
63GO:0009226: nucleotide-sugar biosynthetic process2.32E-03
64GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.32E-03
65GO:1901332: negative regulation of lateral root development2.32E-03
66GO:2001141: regulation of RNA biosynthetic process2.32E-03
67GO:0006515: misfolded or incompletely synthesized protein catabolic process2.32E-03
68GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.32E-03
69GO:1902476: chloride transmembrane transport2.32E-03
70GO:0051513: regulation of monopolar cell growth2.32E-03
71GO:0009723: response to ethylene2.34E-03
72GO:0009768: photosynthesis, light harvesting in photosystem I2.91E-03
73GO:0010023: proanthocyanidin biosynthetic process3.12E-03
74GO:0019464: glycine decarboxylation via glycine cleavage system3.12E-03
75GO:0071249: cellular response to nitrate3.12E-03
76GO:0030104: water homeostasis3.12E-03
77GO:0045727: positive regulation of translation3.12E-03
78GO:0015994: chlorophyll metabolic process3.12E-03
79GO:0006542: glutamine biosynthetic process3.12E-03
80GO:0006808: regulation of nitrogen utilization3.12E-03
81GO:0010109: regulation of photosynthesis3.12E-03
82GO:0019676: ammonia assimilation cycle3.12E-03
83GO:0016226: iron-sulfur cluster assembly3.50E-03
84GO:0009435: NAD biosynthetic process4.00E-03
85GO:0010158: abaxial cell fate specification4.00E-03
86GO:0009247: glycolipid biosynthetic process4.00E-03
87GO:0006564: L-serine biosynthetic process4.00E-03
88GO:0045038: protein import into chloroplast thylakoid membrane4.00E-03
89GO:0006461: protein complex assembly4.00E-03
90GO:1902183: regulation of shoot apical meristem development4.00E-03
91GO:0000413: protein peptidyl-prolyl isomerization4.87E-03
92GO:0000470: maturation of LSU-rRNA4.95E-03
93GO:1902456: regulation of stomatal opening4.95E-03
94GO:0016554: cytidine to uridine editing4.95E-03
95GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.95E-03
96GO:0032973: amino acid export4.95E-03
97GO:0000741: karyogamy4.95E-03
98GO:0006751: glutathione catabolic process4.95E-03
99GO:0009585: red, far-red light phototransduction5.23E-03
100GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.98E-03
101GO:2000033: regulation of seed dormancy process5.98E-03
102GO:0000302: response to reactive oxygen species6.49E-03
103GO:0009651: response to salt stress6.92E-03
104GO:0009772: photosynthetic electron transport in photosystem II7.07E-03
105GO:0043090: amino acid import7.07E-03
106GO:0006821: chloride transport7.07E-03
107GO:0048437: floral organ development7.07E-03
108GO:0010196: nonphotochemical quenching7.07E-03
109GO:1900057: positive regulation of leaf senescence7.07E-03
110GO:0009645: response to low light intensity stimulus7.07E-03
111GO:0051510: regulation of unidimensional cell growth7.07E-03
112GO:0050829: defense response to Gram-negative bacterium7.07E-03
113GO:0009658: chloroplast organization7.37E-03
114GO:0009938: negative regulation of gibberellic acid mediated signaling pathway8.23E-03
115GO:0006402: mRNA catabolic process8.23E-03
116GO:0006605: protein targeting8.23E-03
117GO:0019375: galactolipid biosynthetic process8.23E-03
118GO:0032508: DNA duplex unwinding8.23E-03
119GO:0010492: maintenance of shoot apical meristem identity8.23E-03
120GO:0009231: riboflavin biosynthetic process8.23E-03
121GO:0009932: cell tip growth9.45E-03
122GO:0006002: fructose 6-phosphate metabolic process9.45E-03
123GO:0071482: cellular response to light stimulus9.45E-03
124GO:0010233: phloem transport9.45E-03
125GO:0032544: plastid translation9.45E-03
126GO:0010093: specification of floral organ identity9.45E-03
127GO:0042128: nitrate assimilation1.05E-02
128GO:0009821: alkaloid biosynthetic process1.07E-02
129GO:0009051: pentose-phosphate shunt, oxidative branch1.07E-02
130GO:0090305: nucleic acid phosphodiester bond hydrolysis1.07E-02
131GO:0080144: amino acid homeostasis1.07E-02
132GO:2000024: regulation of leaf development1.07E-02
133GO:0048507: meristem development1.07E-02
134GO:0009060: aerobic respiration1.07E-02
135GO:0010205: photoinhibition1.21E-02
136GO:1900865: chloroplast RNA modification1.21E-02
137GO:0042744: hydrogen peroxide catabolic process1.29E-02
138GO:0009299: mRNA transcription1.35E-02
139GO:0006949: syncytium formation1.35E-02
140GO:0019684: photosynthesis, light reaction1.49E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.49E-02
142GO:0009698: phenylpropanoid metabolic process1.49E-02
143GO:0043085: positive regulation of catalytic activity1.49E-02
144GO:0006879: cellular iron ion homeostasis1.49E-02
145GO:0006352: DNA-templated transcription, initiation1.49E-02
146GO:0009750: response to fructose1.49E-02
147GO:0018119: peptidyl-cysteine S-nitrosylation1.49E-02
148GO:0016485: protein processing1.49E-02
149GO:0048229: gametophyte development1.49E-02
150GO:0009637: response to blue light1.57E-02
151GO:0046686: response to cadmium ion1.63E-02
152GO:0005983: starch catabolic process1.64E-02
153GO:0034599: cellular response to oxidative stress1.64E-02
154GO:0007623: circadian rhythm1.65E-02
155GO:0045490: pectin catabolic process1.65E-02
156GO:0009767: photosynthetic electron transport chain1.80E-02
157GO:0005986: sucrose biosynthetic process1.80E-02
158GO:0006006: glucose metabolic process1.80E-02
159GO:2000028: regulation of photoperiodism, flowering1.80E-02
160GO:0018107: peptidyl-threonine phosphorylation1.80E-02
161GO:0010075: regulation of meristem growth1.80E-02
162GO:0009725: response to hormone1.80E-02
163GO:0006094: gluconeogenesis1.80E-02
164GO:0010143: cutin biosynthetic process1.96E-02
165GO:0009933: meristem structural organization1.96E-02
166GO:0019253: reductive pentose-phosphate cycle1.96E-02
167GO:0009934: regulation of meristem structural organization1.96E-02
168GO:0010030: positive regulation of seed germination2.13E-02
169GO:0010053: root epidermal cell differentiation2.13E-02
170GO:0006636: unsaturated fatty acid biosynthetic process2.30E-02
171GO:0009944: polarity specification of adaxial/abaxial axis2.48E-02
172GO:0009863: salicylic acid mediated signaling pathway2.48E-02
173GO:0010187: negative regulation of seed germination2.48E-02
174GO:2000377: regulation of reactive oxygen species metabolic process2.48E-02
175GO:0005992: trehalose biosynthetic process2.48E-02
176GO:0009664: plant-type cell wall organization2.54E-02
177GO:0006418: tRNA aminoacylation for protein translation2.66E-02
178GO:0007017: microtubule-based process2.66E-02
179GO:0009826: unidimensional cell growth2.73E-02
180GO:0006364: rRNA processing2.73E-02
181GO:0061077: chaperone-mediated protein folding2.84E-02
182GO:0048511: rhythmic process2.84E-02
183GO:0010017: red or far-red light signaling pathway3.03E-02
184GO:0009737: response to abscisic acid3.10E-02
185GO:0009409: response to cold3.12E-02
186GO:0006096: glycolytic process3.23E-02
187GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.23E-02
188GO:0040007: growth3.23E-02
189GO:0006284: base-excision repair3.42E-02
190GO:0009626: plant-type hypersensitive response3.44E-02
191GO:0016117: carotenoid biosynthetic process3.63E-02
192GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.63E-02
193GO:0009740: gibberellic acid mediated signaling pathway3.66E-02
194GO:0042545: cell wall modification3.77E-02
195GO:0048653: anther development3.83E-02
196GO:0042631: cellular response to water deprivation3.83E-02
197GO:0042391: regulation of membrane potential3.83E-02
198GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.89E-02
199GO:0009958: positive gravitropism4.04E-02
200GO:0010154: fruit development4.04E-02
201GO:0010197: polar nucleus fusion4.04E-02
202GO:0009741: response to brassinosteroid4.04E-02
203GO:0009742: brassinosteroid mediated signaling pathway4.11E-02
204GO:0009646: response to absence of light4.25E-02
205GO:0042752: regulation of circadian rhythm4.25E-02
206GO:0009791: post-embryonic development4.47E-02
207GO:0002229: defense response to oomycetes4.69E-02
208GO:0010583: response to cyclopentenone4.92E-02
RankGO TermAdjusted P value
1GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
6GO:0008987: quinolinate synthetase A activity0.00E+00
7GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
8GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
9GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.70E-11
15GO:0005528: FK506 binding1.47E-10
16GO:0019843: rRNA binding8.15E-06
17GO:0016851: magnesium chelatase activity6.81E-05
18GO:0015250: water channel activity1.77E-04
19GO:0004130: cytochrome-c peroxidase activity2.60E-04
20GO:0016787: hydrolase activity2.78E-04
21GO:0046906: tetrapyrrole binding4.56E-04
22GO:0009671: nitrate:proton symporter activity4.56E-04
23GO:0051996: squalene synthase activity4.56E-04
24GO:0045485: omega-6 fatty acid desaturase activity4.56E-04
25GO:0005221: intracellular cyclic nucleotide activated cation channel activity4.56E-04
26GO:0004252: serine-type endopeptidase activity5.70E-04
27GO:0005381: iron ion transmembrane transporter activity9.64E-04
28GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity9.85E-04
29GO:0004047: aminomethyltransferase activity9.85E-04
30GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.85E-04
31GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.85E-04
32GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.85E-04
33GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.85E-04
34GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.85E-04
35GO:0008967: phosphoglycolate phosphatase activity9.85E-04
36GO:0047746: chlorophyllase activity9.85E-04
37GO:0016868: intramolecular transferase activity, phosphotransferases9.85E-04
38GO:0004618: phosphoglycerate kinase activity9.85E-04
39GO:0003839: gamma-glutamylcyclotransferase activity9.85E-04
40GO:0005094: Rho GDP-dissociation inhibitor activity9.85E-04
41GO:0043425: bHLH transcription factor binding9.85E-04
42GO:0004617: phosphoglycerate dehydrogenase activity9.85E-04
43GO:0016168: chlorophyll binding1.46E-03
44GO:0015462: ATPase-coupled protein transmembrane transporter activity1.60E-03
45GO:0050734: hydroxycinnamoyltransferase activity1.60E-03
46GO:0002161: aminoacyl-tRNA editing activity1.60E-03
47GO:0004075: biotin carboxylase activity1.60E-03
48GO:0003935: GTP cyclohydrolase II activity1.60E-03
49GO:0008236: serine-type peptidase activity1.79E-03
50GO:0008266: poly(U) RNA binding1.90E-03
51GO:0005096: GTPase activator activity2.03E-03
52GO:0001872: (1->3)-beta-D-glucan binding2.32E-03
53GO:0004375: glycine dehydrogenase (decarboxylating) activity2.32E-03
54GO:0035250: UDP-galactosyltransferase activity2.32E-03
55GO:0031409: pigment binding2.37E-03
56GO:0004345: glucose-6-phosphate dehydrogenase activity3.12E-03
57GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.12E-03
58GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.12E-03
59GO:0016987: sigma factor activity3.12E-03
60GO:0009044: xylan 1,4-beta-xylosidase activity3.12E-03
61GO:0005253: anion channel activity3.12E-03
62GO:0046556: alpha-L-arabinofuranosidase activity3.12E-03
63GO:0001053: plastid sigma factor activity3.12E-03
64GO:0004176: ATP-dependent peptidase activity3.20E-03
65GO:0051537: 2 iron, 2 sulfur cluster binding3.95E-03
66GO:0008725: DNA-3-methyladenine glycosylase activity4.00E-03
67GO:0004356: glutamate-ammonia ligase activity4.00E-03
68GO:0003989: acetyl-CoA carboxylase activity4.00E-03
69GO:0003727: single-stranded RNA binding4.15E-03
70GO:0016688: L-ascorbate peroxidase activity4.95E-03
71GO:0042578: phosphoric ester hydrolase activity4.95E-03
72GO:0005247: voltage-gated chloride channel activity4.95E-03
73GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.98E-03
74GO:0005261: cation channel activity5.98E-03
75GO:0004559: alpha-mannosidase activity5.98E-03
76GO:0005242: inward rectifier potassium channel activity5.98E-03
77GO:0046872: metal ion binding6.60E-03
78GO:0019899: enzyme binding7.07E-03
79GO:0004033: aldo-keto reductase (NADP) activity8.23E-03
80GO:0016597: amino acid binding8.88E-03
81GO:0000989: transcription factor activity, transcription factor binding1.07E-02
82GO:0016844: strictosidine synthase activity1.21E-02
83GO:0015112: nitrate transmembrane transporter activity1.21E-02
84GO:0008047: enzyme activator activity1.35E-02
85GO:0004805: trehalose-phosphatase activity1.35E-02
86GO:0000049: tRNA binding1.64E-02
87GO:0004565: beta-galactosidase activity1.80E-02
88GO:0008081: phosphoric diester hydrolase activity1.80E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.80E-02
90GO:0031072: heat shock protein binding1.80E-02
91GO:0005262: calcium channel activity1.80E-02
92GO:0003743: translation initiation factor activity2.01E-02
93GO:0030553: cGMP binding2.13E-02
94GO:0008146: sulfotransferase activity2.13E-02
95GO:0030552: cAMP binding2.13E-02
96GO:0051536: iron-sulfur cluster binding2.48E-02
97GO:0005216: ion channel activity2.66E-02
98GO:0015079: potassium ion transmembrane transporter activity2.66E-02
99GO:0004707: MAP kinase activity2.84E-02
100GO:0033612: receptor serine/threonine kinase binding2.84E-02
101GO:0016788: hydrolase activity, acting on ester bonds2.93E-02
102GO:0045330: aspartyl esterase activity3.02E-02
103GO:0003723: RNA binding3.07E-02
104GO:0030570: pectate lyase activity3.23E-02
105GO:0022891: substrate-specific transmembrane transporter activity3.23E-02
106GO:0003756: protein disulfide isomerase activity3.42E-02
107GO:0004650: polygalacturonase activity3.55E-02
108GO:0004812: aminoacyl-tRNA ligase activity3.63E-02
109GO:0030599: pectinesterase activity3.66E-02
110GO:0030551: cyclic nucleotide binding3.83E-02
111GO:0050662: coenzyme binding4.25E-02
112GO:0010181: FMN binding4.25E-02
113GO:0005515: protein binding4.63E-02
114GO:0048038: quinone binding4.69E-02
115GO:0004518: nuclease activity4.92E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0043233: organelle lumen0.00E+00
3GO:0009507: chloroplast1.47E-44
4GO:0009535: chloroplast thylakoid membrane3.19E-28
5GO:0009534: chloroplast thylakoid1.05E-24
6GO:0009570: chloroplast stroma3.27E-24
7GO:0009543: chloroplast thylakoid lumen7.02E-21
8GO:0009941: chloroplast envelope9.26E-20
9GO:0009579: thylakoid8.09E-14
10GO:0031977: thylakoid lumen4.93E-10
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.22E-07
12GO:0010007: magnesium chelatase complex3.16E-05
13GO:0030095: chloroplast photosystem II1.65E-04
14GO:0009654: photosystem II oxygen evolving complex3.02E-04
15GO:0010287: plastoglobule4.27E-04
16GO:0009533: chloroplast stromal thylakoid4.49E-04
17GO:0009782: photosystem I antenna complex4.56E-04
18GO:0043674: columella4.56E-04
19GO:0009344: nitrite reductase complex [NAD(P)H]4.56E-04
20GO:0009547: plastid ribosome4.56E-04
21GO:0031969: chloroplast membrane6.63E-04
22GO:0009523: photosystem II7.86E-04
23GO:0019898: extrinsic component of membrane7.86E-04
24GO:0080085: signal recognition particle, chloroplast targeting9.85E-04
25GO:0005782: peroxisomal matrix1.60E-03
26GO:0009706: chloroplast inner membrane1.64E-03
27GO:0030076: light-harvesting complex2.13E-03
28GO:0042646: plastid nucleoid2.32E-03
29GO:0005960: glycine cleavage complex2.32E-03
30GO:0009531: secondary cell wall2.32E-03
31GO:0042651: thylakoid membrane2.91E-03
32GO:0034707: chloride channel complex4.95E-03
33GO:0009522: photosystem I5.65E-03
34GO:0016363: nuclear matrix5.98E-03
35GO:0016020: membrane6.77E-03
36GO:0042807: central vacuole7.07E-03
37GO:0005887: integral component of plasma membrane8.95E-03
38GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.45E-03
39GO:0008180: COP9 signalosome1.07E-02
40GO:0045298: tubulin complex1.07E-02
41GO:0032040: small-subunit processome1.64E-02
42GO:0000311: plastid large ribosomal subunit1.64E-02
43GO:0005840: ribosome1.93E-02
44GO:0048046: apoplast1.95E-02
45GO:0000312: plastid small ribosomal subunit1.96E-02
46GO:0009505: plant-type cell wall2.70E-02
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Gene type



Gene DE type