co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
4	GO:0071806: protein transmembrane transport	7.75E-05
5	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	7.75E-05
6	GO:0000303: response to superoxide	7.75E-05
7	GO:0006481: C-terminal protein methylation	7.75E-05
8	GO:0010941: regulation of cell death	7.75E-05
9	GO:0034214: protein hexamerization	7.75E-05
10	GO:0019483: beta-alanine biosynthetic process	1.85E-04
11	GO:1902000: homogentisate catabolic process	1.85E-04
12	GO:0006996: organelle organization	1.85E-04
13	GO:0071395: cellular response to jasmonic acid stimulus	1.85E-04
14	GO:0071712: ER-associated misfolded protein catabolic process	1.85E-04
15	GO:0006212: uracil catabolic process	1.85E-04
16	GO:0010359: regulation of anion channel activity	3.11E-04
17	GO:0071492: cellular response to UV-A	3.11E-04
18	GO:0009072: aromatic amino acid family metabolic process	3.11E-04
19	GO:0042631: cellular response to water deprivation	4.24E-04
20	GO:0001676: long-chain fatty acid metabolic process	4.49E-04
21	GO:0006624: vacuolar protein processing	4.49E-04
22	GO:0006809: nitric oxide biosynthetic process	4.49E-04
23	GO:0006878: cellular copper ion homeostasis	5.98E-04
24	GO:0070534: protein K63-linked ubiquitination	5.98E-04
25	GO:0071486: cellular response to high light intensity	5.98E-04
26	GO:0009765: photosynthesis, light harvesting	5.98E-04
27	GO:0006464: cellular protein modification process	6.75E-04
28	GO:0006914: autophagy	6.75E-04
29	GO:0010150: leaf senescence	6.88E-04
30	GO:0009816: defense response to bacterium, incompatible interaction	8.43E-04
31	GO:1902456: regulation of stomatal opening	9.24E-04
32	GO:0006301: postreplication repair	9.24E-04
33	GO:0070814: hydrogen sulfide biosynthetic process	9.24E-04
34	GO:0048317: seed morphogenesis	9.24E-04
35	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	9.24E-04
36	GO:0006950: response to stress	9.33E-04
37	GO:0080060: integument development	1.10E-03
38	GO:0010038: response to metal ion	1.29E-03
39	GO:0010044: response to aluminum ion	1.29E-03
40	GO:0009610: response to symbiotic fungus	1.29E-03
41	GO:0045995: regulation of embryonic development	1.29E-03
42	GO:0006955: immune response	1.29E-03
43	GO:0071446: cellular response to salicylic acid stimulus	1.29E-03
44	GO:0009723: response to ethylene	1.41E-03
45	GO:0016559: peroxisome fission	1.48E-03
46	GO:0006631: fatty acid metabolic process	1.52E-03
47	GO:0046777: protein autophosphorylation	1.67E-03
48	GO:0030968: endoplasmic reticulum unfolded protein response	1.69E-03
49	GO:0043562: cellular response to nitrogen levels	1.69E-03
50	GO:0008202: steroid metabolic process	2.14E-03
51	GO:0051603: proteolysis involved in cellular protein catabolic process	2.28E-03
52	GO:0000103: sulfate assimilation	2.37E-03
53	GO:0019538: protein metabolic process	2.37E-03
54	GO:0006979: response to oxidative stress	2.80E-03
55	GO:0000266: mitochondrial fission	2.86E-03
56	GO:0012501: programmed cell death	2.86E-03
57	GO:0045037: protein import into chloroplast stroma	2.86E-03
58	GO:0006626: protein targeting to mitochondrion	3.12E-03
59	GO:0010102: lateral root morphogenesis	3.12E-03
60	GO:0015031: protein transport	3.98E-03
61	GO:0016567: protein ubiquitination	4.06E-03
62	GO:2000377: regulation of reactive oxygen species metabolic process	4.23E-03
63	GO:0030150: protein import into mitochondrial matrix	4.23E-03
64	GO:0031408: oxylipin biosynthetic process	4.82E-03
65	GO:0031348: negative regulation of defense response	5.13E-03
66	GO:0009611: response to wounding	5.34E-03
67	GO:0071215: cellular response to abscisic acid stimulus	5.45E-03
68	GO:0035556: intracellular signal transduction	5.56E-03
69	GO:0006470: protein dephosphorylation	6.13E-03
70	GO:0009617: response to bacterium	6.40E-03
71	GO:0006468: protein phosphorylation	6.67E-03
72	GO:0010197: polar nucleus fusion	6.78E-03
73	GO:0071472: cellular response to salt stress	6.78E-03
74	GO:0006891: intra-Golgi vesicle-mediated transport	7.85E-03
75	GO:0010193: response to ozone	7.85E-03
76	GO:0016032: viral process	8.22E-03
77	GO:0006970: response to osmotic stress	8.94E-03
78	GO:0071805: potassium ion transmembrane transport	9.36E-03
79	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.06E-02
80	GO:0010200: response to chitin	1.07E-02
81	GO:0044550: secondary metabolite biosynthetic process	1.12E-02
82	GO:0048573: photoperiodism, flowering	1.14E-02
83	GO:0009407: toxin catabolic process	1.31E-02
84	GO:0010119: regulation of stomatal movement	1.36E-02
85	GO:0007568: aging	1.36E-02
86	GO:0009867: jasmonic acid mediated signaling pathway	1.45E-02
87	GO:0009751: response to salicylic acid	1.50E-02
88	GO:0009753: response to jasmonic acid	1.64E-02
89	GO:0051707: response to other organism	1.73E-02
90	GO:0009409: response to cold	1.87E-02
91	GO:0009873: ethylene-activated signaling pathway	1.97E-02
92	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.98E-02
93	GO:0006813: potassium ion transport	2.14E-02
94	GO:0006417: regulation of translation	2.30E-02
95	GO:0048367: shoot system development	2.47E-02
96	GO:0042545: cell wall modification	2.69E-02
97	GO:0018105: peptidyl-serine phosphorylation	2.81E-02
98	GO:0000398: mRNA splicing, via spliceosome	3.05E-02
99	GO:0009790: embryo development	3.61E-02
100	GO:0006511: ubiquitin-dependent protein catabolic process	3.68E-02
101	GO:0006633: fatty acid biosynthetic process	3.80E-02
102	GO:0006413: translational initiation	3.86E-02
103	GO:0045490: pectin catabolic process	4.06E-02
104	GO:0007166: cell surface receptor signaling pathway	4.47E-02
105	GO:0008380: RNA splicing	4.60E-02
106	GO:0050832: defense response to fungus	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004157: dihydropyrimidinase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
4	GO:0033550: MAP kinase tyrosine phosphatase activity	0.00E+00
5	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	7.75E-05
6	GO:0019786: Atg8-specific protease activity	7.75E-05
7	GO:0044390: ubiquitin-like protein conjugating enzyme binding	1.85E-04
8	GO:0019779: Atg8 activating enzyme activity	1.85E-04
9	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	1.85E-04
10	GO:0004781: sulfate adenylyltransferase (ATP) activity	3.11E-04
11	GO:0004416: hydroxyacylglutathione hydrolase activity	4.49E-04
12	GO:0019776: Atg8 ligase activity	5.98E-04
13	GO:0004301: epoxide hydrolase activity	5.98E-04
14	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	5.98E-04
15	GO:0004197: cysteine-type endopeptidase activity	5.98E-04
16	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	7.57E-04
17	GO:0031386: protein tag	7.57E-04
18	GO:0031593: polyubiquitin binding	9.24E-04
19	GO:0004842: ubiquitin-protein transferase activity	1.02E-03
20	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.10E-03
21	GO:0102391: decanoate--CoA ligase activity	1.10E-03
22	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.10E-03
23	GO:0004467: long-chain fatty acid-CoA ligase activity	1.29E-03
24	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.48E-03
25	GO:0008142: oxysterol binding	1.69E-03
26	GO:0004713: protein tyrosine kinase activity	2.37E-03
27	GO:0004674: protein serine/threonine kinase activity	2.75E-03
28	GO:0004521: endoribonuclease activity	2.86E-03
29	GO:0015266: protein channel activity	3.12E-03
30	GO:0004175: endopeptidase activity	3.38E-03
31	GO:0005515: protein binding	3.90E-03
32	GO:0004725: protein tyrosine phosphatase activity	3.94E-03
33	GO:0015079: potassium ion transmembrane transporter activity	4.52E-03
34	GO:0004601: peroxidase activity	8.30E-03
35	GO:0051213: dioxygenase activity	1.02E-02
36	GO:0016168: chlorophyll binding	1.06E-02
37	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.10E-02
38	GO:0016301: kinase activity	1.11E-02
39	GO:0004683: calmodulin-dependent protein kinase activity	1.14E-02
40	GO:0030247: polysaccharide binding	1.14E-02
41	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.22E-02
42	GO:0005506: iron ion binding	1.25E-02
43	GO:0042803: protein homodimerization activity	1.29E-02
44	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.33E-02
45	GO:0004722: protein serine/threonine phosphatase activity	1.35E-02
46	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.54E-02
47	GO:0004364: glutathione transferase activity	1.68E-02
48	GO:0005524: ATP binding	1.68E-02
49	GO:0020037: heme binding	2.26E-02
50	GO:0008234: cysteine-type peptidase activity	2.30E-02
51	GO:0031625: ubiquitin protein ligase binding	2.30E-02
52	GO:0045330: aspartyl esterase activity	2.30E-02
53	GO:0016874: ligase activity	2.64E-02
54	GO:0030599: pectinesterase activity	2.64E-02
55	GO:0016787: hydrolase activity	3.31E-02
56	GO:0008565: protein transporter activity	3.67E-02
57	GO:0005507: copper ion binding	3.85E-02
58	GO:0019825: oxygen binding	3.85E-02
59	GO:0046910: pectinesterase inhibitor activity	3.86E-02
60	GO:0005516: calmodulin binding	4.07E-02
61	GO:0003743: translation initiation factor activity	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0031972: chloroplast intermembrane space	7.75E-05
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	3.11E-04
3	GO:0030139: endocytic vesicle	3.11E-04
4	GO:0000323: lytic vacuole	4.49E-04
5	GO:0036513: Derlin-1 retrotranslocation complex	4.49E-04
6	GO:0005775: vacuolar lumen	4.49E-04
7	GO:0032585: multivesicular body membrane	4.49E-04
8	GO:0005776: autophagosome	5.98E-04
9	GO:0031372: UBC13-MMS2 complex	5.98E-04
10	GO:0000164: protein phosphatase type 1 complex	7.57E-04
11	GO:0005829: cytosol	1.08E-03
12	GO:0016363: nuclear matrix	1.10E-03
13	GO:0031305: integral component of mitochondrial inner membrane	1.48E-03
14	GO:0000421: autophagosome membrane	1.48E-03
15	GO:0031901: early endosome membrane	1.91E-03
16	GO:0005764: lysosome	3.38E-03
17	GO:0005795: Golgi stack	3.66E-03
18	GO:0005769: early endosome	3.94E-03
19	GO:0005741: mitochondrial outer membrane	4.82E-03
20	GO:0031410: cytoplasmic vesicle	5.13E-03
21	GO:0005783: endoplasmic reticulum	5.46E-03
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	5.77E-03
23	GO:0009523: photosystem II	7.49E-03
24	GO:0071944: cell periphery	8.59E-03
25	GO:0005778: peroxisomal membrane	9.36E-03
26	GO:0009707: chloroplast outer membrane	1.22E-02
27	GO:0016021: integral component of membrane	2.58E-02
28	GO:0012505: endomembrane system	2.69E-02
29	GO:0005623: cell	3.29E-02
30	GO:0005615: extracellular space	4.40E-02
31	GO:0005622: intracellular	4.79E-02
32	GO:0005768: endosome	4.91E-02