Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G10720

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:1901698: response to nitrogen compound0.00E+00
6GO:2000121: regulation of removal of superoxide radicals0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0015979: photosynthesis1.67E-13
11GO:0015995: chlorophyll biosynthetic process2.40E-09
12GO:0006412: translation9.43E-08
13GO:0042254: ribosome biogenesis1.88E-07
14GO:0032544: plastid translation7.65E-07
15GO:0009735: response to cytokinin3.27E-06
16GO:0009773: photosynthetic electron transport in photosystem I3.80E-06
17GO:0010207: photosystem II assembly9.25E-06
18GO:0010206: photosystem II repair5.22E-05
19GO:0006782: protoporphyrinogen IX biosynthetic process8.79E-05
20GO:0006949: syncytium formation8.79E-05
21GO:0009658: chloroplast organization1.13E-04
22GO:0045727: positive regulation of translation1.36E-04
23GO:0006546: glycine catabolic process1.36E-04
24GO:0015976: carbon utilization1.36E-04
25GO:0006833: water transport2.69E-04
26GO:0042549: photosystem II stabilization2.95E-04
27GO:0010019: chloroplast-nucleus signaling pathway3.95E-04
28GO:0071588: hydrogen peroxide mediated signaling pathway4.95E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.95E-04
30GO:0043489: RNA stabilization4.95E-04
31GO:0071370: cellular response to gibberellin stimulus4.95E-04
32GO:0046520: sphingoid biosynthetic process4.95E-04
33GO:0042371: vitamin K biosynthetic process4.95E-04
34GO:0009826: unidimensional cell growth5.10E-04
35GO:0046620: regulation of organ growth6.32E-04
36GO:0034220: ion transmembrane transport6.95E-04
37GO:0010114: response to red light7.35E-04
38GO:0009657: plastid organization7.70E-04
39GO:0009409: response to cold8.11E-04
40GO:0006783: heme biosynthetic process9.21E-04
41GO:0009664: plant-type cell wall organization1.04E-03
42GO:0031648: protein destabilization1.07E-03
43GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.07E-03
44GO:0006521: regulation of cellular amino acid metabolic process1.07E-03
45GO:0030388: fructose 1,6-bisphosphate metabolic process1.07E-03
46GO:0006779: porphyrin-containing compound biosynthetic process1.08E-03
47GO:0009828: plant-type cell wall loosening1.27E-03
48GO:0018119: peptidyl-cysteine S-nitrosylation1.46E-03
49GO:0010027: thylakoid membrane organization1.59E-03
50GO:0015706: nitrate transport1.67E-03
51GO:0006000: fructose metabolic process1.74E-03
52GO:0006013: mannose metabolic process1.74E-03
53GO:0015840: urea transport1.74E-03
54GO:0071705: nitrogen compound transport1.74E-03
55GO:0006696: ergosterol biosynthetic process1.74E-03
56GO:0045493: xylan catabolic process1.74E-03
57GO:0009725: response to hormone1.90E-03
58GO:0010143: cutin biosynthetic process2.14E-03
59GO:0018298: protein-chromophore linkage2.23E-03
60GO:0010167: response to nitrate2.40E-03
61GO:0009800: cinnamic acid biosynthetic process2.52E-03
62GO:0080170: hydrogen peroxide transmembrane transport2.52E-03
63GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.52E-03
64GO:2001141: regulation of RNA biosynthetic process2.52E-03
65GO:1902476: chloride transmembrane transport2.52E-03
66GO:0051513: regulation of monopolar cell growth2.52E-03
67GO:0071484: cellular response to light intensity2.52E-03
68GO:0006636: unsaturated fatty acid biosynthetic process2.68E-03
69GO:0009768: photosynthesis, light harvesting in photosystem I3.28E-03
70GO:0019464: glycine decarboxylation via glycine cleavage system3.40E-03
71GO:0071249: cellular response to nitrate3.40E-03
72GO:2000122: negative regulation of stomatal complex development3.40E-03
73GO:0030104: water homeostasis3.40E-03
74GO:0015994: chlorophyll metabolic process3.40E-03
75GO:0010037: response to carbon dioxide3.40E-03
76GO:0006542: glutamine biosynthetic process3.40E-03
77GO:0019676: ammonia assimilation cycle3.40E-03
78GO:0040008: regulation of growth4.26E-03
79GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.32E-03
80GO:0009247: glycolipid biosynthetic process4.36E-03
81GO:0034052: positive regulation of plant-type hypersensitive response4.36E-03
82GO:0032543: mitochondrial translation4.36E-03
83GO:0045038: protein import into chloroplast thylakoid membrane4.36E-03
84GO:0006461: protein complex assembly4.36E-03
85GO:0007623: circadian rhythm4.57E-03
86GO:0009644: response to high light intensity4.62E-03
87GO:1902456: regulation of stomatal opening5.40E-03
88GO:0006559: L-phenylalanine catabolic process5.40E-03
89GO:0032973: amino acid export5.40E-03
90GO:0042631: cellular response to water deprivation5.51E-03
91GO:0042335: cuticle development5.51E-03
92GO:0000413: protein peptidyl-prolyl isomerization5.51E-03
93GO:0009955: adaxial/abaxial pattern specification6.52E-03
94GO:0042372: phylloquinone biosynthetic process6.52E-03
95GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.52E-03
96GO:0006694: steroid biosynthetic process6.52E-03
97GO:1901259: chloroplast rRNA processing6.52E-03
98GO:0009854: oxidative photosynthetic carbon pathway6.52E-03
99GO:0006810: transport7.31E-03
100GO:0000302: response to reactive oxygen species7.35E-03
101GO:0016132: brassinosteroid biosynthetic process7.35E-03
102GO:0043090: amino acid import7.71E-03
103GO:0030497: fatty acid elongation7.71E-03
104GO:0006821: chloride transport7.71E-03
105GO:0009645: response to low light intensity stimulus7.71E-03
106GO:0010444: guard mother cell differentiation7.71E-03
107GO:0050829: defense response to Gram-negative bacterium7.71E-03
108GO:0009610: response to symbiotic fungus7.71E-03
109GO:0010583: response to cyclopentenone7.86E-03
110GO:0046686: response to cadmium ion8.39E-03
111GO:0009740: gibberellic acid mediated signaling pathway8.91E-03
112GO:0006402: mRNA catabolic process8.97E-03
113GO:0030091: protein repair8.97E-03
114GO:0009850: auxin metabolic process8.97E-03
115GO:0043068: positive regulation of programmed cell death8.97E-03
116GO:0006605: protein targeting8.97E-03
117GO:0019375: galactolipid biosynthetic process8.97E-03
118GO:0042255: ribosome assembly8.97E-03
119GO:0009231: riboflavin biosynthetic process8.97E-03
120GO:0009699: phenylpropanoid biosynthetic process1.03E-02
121GO:0009932: cell tip growth1.03E-02
122GO:0006002: fructose 6-phosphate metabolic process1.03E-02
123GO:0071482: cellular response to light stimulus1.03E-02
124GO:0009808: lignin metabolic process1.03E-02
125GO:0009733: response to auxin1.06E-02
126GO:0009051: pentose-phosphate shunt, oxidative branch1.17E-02
127GO:0051865: protein autoubiquitination1.17E-02
128GO:0080144: amino acid homeostasis1.17E-02
129GO:0000373: Group II intron splicing1.17E-02
130GO:0009734: auxin-activated signaling pathway1.19E-02
131GO:0080167: response to karrikin1.23E-02
132GO:0010411: xyloglucan metabolic process1.26E-02
133GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.30E-02
134GO:0010205: photoinhibition1.32E-02
135GO:0009638: phototropism1.32E-02
136GO:0009299: mRNA transcription1.47E-02
137GO:0009870: defense response signaling pathway, resistance gene-dependent1.47E-02
138GO:0006535: cysteine biosynthetic process from serine1.47E-02
139GO:0042744: hydrogen peroxide catabolic process1.51E-02
140GO:0045454: cell redox homeostasis1.62E-02
141GO:0010119: regulation of stomatal movement1.62E-02
142GO:0009631: cold acclimation1.62E-02
143GO:0010015: root morphogenesis1.63E-02
144GO:0000038: very long-chain fatty acid metabolic process1.63E-02
145GO:0019684: photosynthesis, light reaction1.63E-02
146GO:0009089: lysine biosynthetic process via diaminopimelate1.63E-02
147GO:0009698: phenylpropanoid metabolic process1.63E-02
148GO:0043085: positive regulation of catalytic activity1.63E-02
149GO:0006352: DNA-templated transcription, initiation1.63E-02
150GO:0000272: polysaccharide catabolic process1.63E-02
151GO:0009750: response to fructose1.63E-02
152GO:0055114: oxidation-reduction process1.65E-02
153GO:0009637: response to blue light1.77E-02
154GO:0016024: CDP-diacylglycerol biosynthetic process1.80E-02
155GO:0034599: cellular response to oxidative stress1.86E-02
156GO:0045490: pectin catabolic process1.93E-02
157GO:0005986: sucrose biosynthetic process1.97E-02
158GO:0010628: positive regulation of gene expression1.97E-02
159GO:0006006: glucose metabolic process1.97E-02
160GO:2000028: regulation of photoperiodism, flowering1.97E-02
161GO:0050826: response to freezing1.97E-02
162GO:0006094: gluconeogenesis1.97E-02
163GO:0019253: reductive pentose-phosphate cycle2.14E-02
164GO:0009739: response to gibberellin2.23E-02
165GO:0042742: defense response to bacterium2.24E-02
166GO:0009926: auxin polar transport2.29E-02
167GO:0005985: sucrose metabolic process2.33E-02
168GO:0010030: positive regulation of seed germination2.33E-02
169GO:0010025: wax biosynthetic process2.51E-02
170GO:0019762: glucosinolate catabolic process2.51E-02
171GO:0019344: cysteine biosynthetic process2.71E-02
172GO:0000027: ribosomal large subunit assembly2.71E-02
173GO:0005992: trehalose biosynthetic process2.71E-02
174GO:0006487: protein N-linked glycosylation2.71E-02
175GO:0007017: microtubule-based process2.90E-02
176GO:0006364: rRNA processing3.09E-02
177GO:0061077: chaperone-mediated protein folding3.11E-02
178GO:0031408: oxylipin biosynthetic process3.11E-02
179GO:0048511: rhythmic process3.11E-02
180GO:0009814: defense response, incompatible interaction3.31E-02
181GO:2000022: regulation of jasmonic acid mediated signaling pathway3.31E-02
182GO:0019748: secondary metabolic process3.31E-02
183GO:0006417: regulation of translation3.42E-02
184GO:0006284: base-excision repair3.74E-02
185GO:0009306: protein secretion3.74E-02
186GO:0009626: plant-type hypersensitive response3.89E-02
187GO:0016117: carotenoid biosynthetic process3.96E-02
188GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.96E-02
189GO:0080022: primary root development4.19E-02
190GO:0010087: phloem or xylem histogenesis4.19E-02
191GO:0010305: leaf vascular tissue pattern formation4.42E-02
192GO:0006396: RNA processing4.52E-02
193GO:0009742: brassinosteroid mediated signaling pathway4.65E-02
194GO:0042752: regulation of circadian rhythm4.65E-02
195GO:0009651: response to salt stress4.65E-02
196GO:0009749: response to glucose4.88E-02
197GO:0019252: starch biosynthetic process4.88E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
10GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
11GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
12GO:0046905: phytoene synthase activity0.00E+00
13GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
16GO:0019843: rRNA binding7.26E-19
17GO:0003735: structural constituent of ribosome1.29E-10
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.68E-08
19GO:0005528: FK506 binding6.05E-07
20GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.08E-05
21GO:0016851: magnesium chelatase activity7.86E-05
22GO:0015250: water channel activity2.19E-04
23GO:0004130: cytochrome-c peroxidase activity2.95E-04
24GO:0051920: peroxiredoxin activity3.95E-04
25GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.95E-04
26GO:0046906: tetrapyrrole binding4.95E-04
27GO:0052638: indole-3-butyrate beta-glucosyltransferase activity4.95E-04
28GO:0004655: porphobilinogen synthase activity4.95E-04
29GO:0015200: methylammonium transmembrane transporter activity4.95E-04
30GO:0009671: nitrate:proton symporter activity4.95E-04
31GO:0004853: uroporphyrinogen decarboxylase activity4.95E-04
32GO:0051996: squalene synthase activity4.95E-04
33GO:0000248: C-5 sterol desaturase activity4.95E-04
34GO:0000170: sphingosine hydroxylase activity4.95E-04
35GO:0016209: antioxidant activity6.32E-04
36GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.70E-04
37GO:0004047: aminomethyltransferase activity1.07E-03
38GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.07E-03
39GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.07E-03
40GO:0042284: sphingolipid delta-4 desaturase activity1.07E-03
41GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.07E-03
42GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.07E-03
43GO:0008967: phosphoglycolate phosphatase activity1.07E-03
44GO:0047746: chlorophyllase activity1.07E-03
45GO:0042389: omega-3 fatty acid desaturase activity1.07E-03
46GO:0010297: heteropolysaccharide binding1.07E-03
47GO:0043425: bHLH transcription factor binding1.07E-03
48GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity1.07E-03
49GO:0016168: chlorophyll binding1.70E-03
50GO:0010277: chlorophyllide a oxygenase [overall] activity1.74E-03
51GO:0050734: hydroxycinnamoyltransferase activity1.74E-03
52GO:0045548: phenylalanine ammonia-lyase activity1.74E-03
53GO:0004148: dihydrolipoyl dehydrogenase activity1.74E-03
54GO:0003935: GTP cyclohydrolase II activity1.74E-03
55GO:0004089: carbonate dehydratase activity1.90E-03
56GO:0008266: poly(U) RNA binding2.14E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity2.52E-03
58GO:0035250: UDP-galactosyltransferase activity2.52E-03
59GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity2.52E-03
60GO:0031409: pigment binding2.68E-03
61GO:0016987: sigma factor activity3.40E-03
62GO:0009044: xylan 1,4-beta-xylosidase activity3.40E-03
63GO:0005253: anion channel activity3.40E-03
64GO:0046556: alpha-L-arabinofuranosidase activity3.40E-03
65GO:0015204: urea transmembrane transporter activity3.40E-03
66GO:0004659: prenyltransferase activity3.40E-03
67GO:0001053: plastid sigma factor activity3.40E-03
68GO:0004345: glucose-6-phosphate dehydrogenase activity3.40E-03
69GO:0030570: pectate lyase activity4.32E-03
70GO:0009922: fatty acid elongase activity4.36E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor4.36E-03
72GO:0004356: glutamate-ammonia ligase activity4.36E-03
73GO:0008725: DNA-3-methyladenine glycosylase activity4.36E-03
74GO:0051537: 2 iron, 2 sulfur cluster binding4.62E-03
75GO:0003727: single-stranded RNA binding4.70E-03
76GO:0016208: AMP binding5.40E-03
77GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.40E-03
78GO:0016688: L-ascorbate peroxidase activity5.40E-03
79GO:0042578: phosphoric ester hydrolase activity5.40E-03
80GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.40E-03
81GO:0008519: ammonium transmembrane transporter activity5.40E-03
82GO:0005247: voltage-gated chloride channel activity5.40E-03
83GO:0050662: coenzyme binding6.39E-03
84GO:0004017: adenylate kinase activity6.52E-03
85GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.52E-03
86GO:0004559: alpha-mannosidase activity6.52E-03
87GO:0004124: cysteine synthase activity6.52E-03
88GO:0019899: enzyme binding7.71E-03
89GO:0004601: peroxidase activity8.91E-03
90GO:0004564: beta-fructofuranosidase activity8.97E-03
91GO:0016722: oxidoreductase activity, oxidizing metal ions9.48E-03
92GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.84E-03
93GO:0016597: amino acid binding1.01E-02
94GO:0102483: scopolin beta-glucosidase activity1.26E-02
95GO:0004575: sucrose alpha-glucosidase activity1.32E-02
96GO:0015112: nitrate transmembrane transporter activity1.32E-02
97GO:0004805: trehalose-phosphatase activity1.47E-02
98GO:0003993: acid phosphatase activity1.86E-02
99GO:0008422: beta-glucosidase activity1.94E-02
100GO:0031072: heat shock protein binding1.97E-02
101GO:0004185: serine-type carboxypeptidase activity2.29E-02
102GO:0008146: sulfotransferase activity2.33E-02
103GO:0043621: protein self-association2.48E-02
104GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.51E-02
105GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.51E-02
106GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.51E-02
107GO:0003690: double-stranded DNA binding3.20E-02
108GO:0016788: hydrolase activity, acting on ester bonds3.42E-02
109GO:0022891: substrate-specific transmembrane transporter activity3.53E-02
110GO:0003756: protein disulfide isomerase activity3.74E-02
111GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.77E-02
112GO:0004650: polygalacturonase activity4.01E-02
113GO:0016746: transferase activity, transferring acyl groups4.52E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast2.71E-50
5GO:0009535: chloroplast thylakoid membrane1.37E-35
6GO:0009941: chloroplast envelope3.00E-32
7GO:0009570: chloroplast stroma3.30E-30
8GO:0009534: chloroplast thylakoid6.64E-28
9GO:0009543: chloroplast thylakoid lumen1.42E-23
10GO:0009579: thylakoid4.54E-19
11GO:0031977: thylakoid lumen9.52E-13
12GO:0005840: ribosome2.93E-10
13GO:0030095: chloroplast photosystem II4.09E-09
14GO:0009505: plant-type cell wall4.18E-07
15GO:0048046: apoplast6.22E-07
16GO:0010287: plastoglobule1.02E-05
17GO:0009533: chloroplast stromal thylakoid1.84E-05
18GO:0009654: photosystem II oxygen evolving complex2.34E-05
19GO:0031969: chloroplast membrane3.46E-05
20GO:0010007: magnesium chelatase complex3.66E-05
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.22E-05
22GO:0016020: membrane5.53E-05
23GO:0009523: photosystem II1.00E-04
24GO:0019898: extrinsic component of membrane1.00E-04
25GO:0000312: plastid small ribosomal subunit1.96E-04
26GO:0009706: chloroplast inner membrane3.92E-04
27GO:0015935: small ribosomal subunit4.03E-04
28GO:0009782: photosystem I antenna complex4.95E-04
29GO:0043674: columella4.95E-04
30GO:0042807: central vacuole5.07E-04
31GO:0005618: cell wall5.23E-04
32GO:0009538: photosystem I reaction center6.32E-04
33GO:0000427: plastid-encoded plastid RNA polymerase complex1.07E-03
34GO:0042170: plastid membrane1.07E-03
35GO:0080085: signal recognition particle, chloroplast targeting1.07E-03
36GO:0030529: intracellular ribonucleoprotein complex1.59E-03
37GO:0000311: plastid large ribosomal subunit1.67E-03
38GO:0009509: chromoplast1.74E-03
39GO:0030076: light-harvesting complex2.40E-03
40GO:0005775: vacuolar lumen2.52E-03
41GO:0042646: plastid nucleoid2.52E-03
42GO:0005960: glycine cleavage complex2.52E-03
43GO:0009531: secondary cell wall2.52E-03
44GO:0031225: anchored component of membrane4.72E-03
45GO:0034707: chloride channel complex5.40E-03
46GO:0009522: photosystem I6.39E-03
47GO:0016363: nuclear matrix6.52E-03
48GO:0010319: stromule9.48E-03
49GO:0009295: nucleoid9.48E-03
50GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.03E-02
51GO:0000326: protein storage vacuole1.03E-02
52GO:0005774: vacuolar membrane1.05E-02
53GO:0008180: COP9 signalosome1.17E-02
54GO:0045298: tubulin complex1.17E-02
55GO:0005763: mitochondrial small ribosomal subunit1.17E-02
56GO:0005576: extracellular region1.28E-02
57GO:0009705: plant-type vacuole membrane1.93E-02
58GO:0022627: cytosolic small ribosomal subunit2.75E-02
59GO:0046658: anchored component of plasma membrane2.75E-02
60GO:0042651: thylakoid membrane2.90E-02
61GO:0005887: integral component of plasma membrane3.47E-02
62GO:0022626: cytosolic ribosome4.79E-02
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Gene type



Gene DE type