co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0006412: translation	1.52E-114
3	GO:0042254: ribosome biogenesis	8.98E-34
4	GO:0000027: ribosomal large subunit assembly	2.52E-13
5	GO:0009735: response to cytokinin	4.56E-09
6	GO:0009955: adaxial/abaxial pattern specification	4.67E-07
7	GO:0000028: ribosomal small subunit assembly	1.18E-06
8	GO:0002181: cytoplasmic translation	3.63E-06
9	GO:0009793: embryo development ending in seed dormancy	8.12E-06
10	GO:0042274: ribosomal small subunit biogenesis	1.59E-05
11	GO:0006364: rRNA processing	5.55E-05
12	GO:0006407: rRNA export from nucleus	1.40E-04
13	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.40E-04
14	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.40E-04
15	GO:0010162: seed dormancy process	2.09E-04
16	GO:0048569: post-embryonic animal organ development	3.20E-04
17	GO:0006626: protein targeting to mitochondrion	3.21E-04
18	GO:0008283: cell proliferation	4.14E-04
19	GO:0009965: leaf morphogenesis	4.81E-04
20	GO:0009944: polarity specification of adaxial/abaxial axis	5.03E-04
21	GO:1902626: assembly of large subunit precursor of preribosome	5.26E-04
22	GO:0042256: mature ribosome assembly	5.26E-04
23	GO:0090506: axillary shoot meristem initiation	5.26E-04
24	GO:0009294: DNA mediated transformation	7.22E-04
25	GO:0040007: growth	7.22E-04
26	GO:0070301: cellular response to hydrogen peroxide	7.53E-04
27	GO:0006241: CTP biosynthetic process	7.53E-04
28	GO:0006165: nucleoside diphosphate phosphorylation	7.53E-04
29	GO:0006228: UTP biosynthetic process	7.53E-04
30	GO:0044205: 'de novo' UMP biosynthetic process	9.98E-04
31	GO:2000032: regulation of secondary shoot formation	9.98E-04
32	GO:0006183: GTP biosynthetic process	9.98E-04
33	GO:0071493: cellular response to UV-B	1.26E-03
34	GO:0000470: maturation of LSU-rRNA	1.55E-03
35	GO:0016444: somatic cell DNA recombination	1.86E-03
36	GO:0000911: cytokinesis by cell plate formation	1.86E-03
37	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.18E-03
38	GO:0001558: regulation of cell growth	2.88E-03
39	GO:0006526: arginine biosynthetic process	2.88E-03
40	GO:0000387: spliceosomal snRNP assembly	3.65E-03
41	GO:0010015: root morphogenesis	4.48E-03
42	GO:0006913: nucleocytoplasmic transport	4.48E-03
43	GO:0006820: anion transport	4.92E-03
44	GO:0010229: inflorescence development	5.37E-03
45	GO:0010102: lateral root morphogenesis	5.37E-03
46	GO:0048467: gynoecium development	5.84E-03
47	GO:0006541: glutamine metabolic process	5.84E-03
48	GO:0030150: protein import into mitochondrial matrix	7.32E-03
49	GO:0051302: regulation of cell division	7.84E-03
50	GO:0006334: nucleosome assembly	8.38E-03
51	GO:0007005: mitochondrion organization	8.92E-03
52	GO:0006413: translational initiation	1.11E-02
53	GO:0000413: protein peptidyl-prolyl isomerization	1.12E-02
54	GO:0009791: post-embryonic development	1.31E-02
55	GO:0032502: developmental process	1.44E-02
56	GO:0009409: response to cold	1.48E-02
57	GO:0010090: trichome morphogenesis	1.51E-02
58	GO:0010252: auxin homeostasis	1.58E-02
59	GO:0046686: response to cadmium ion	1.83E-02
60	GO:0006811: ion transport	2.31E-02
61	GO:0006414: translational elongation	2.38E-02
62	GO:0010043: response to zinc ion	2.39E-02
63	GO:0000724: double-strand break repair via homologous recombination	2.47E-02
64	GO:0009644: response to high light intensity	3.23E-02
65	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.50E-02
66	GO:0009620: response to fungus	4.55E-02
67	GO:0016569: covalent chromatin modification	4.65E-02
68	GO:0009734: auxin-activated signaling pathway	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0016018: cyclosporin A binding	0.00E+00
2	GO:0003735: structural constituent of ribosome	3.47E-134
3	GO:0003729: mRNA binding	3.94E-36
4	GO:0019843: rRNA binding	5.79E-07
5	GO:0008097: 5S rRNA binding	8.48E-06
6	GO:0003723: RNA binding	4.56E-05
7	GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	1.40E-04
8	GO:0004407: histone deacetylase activity	5.03E-04
9	GO:0070181: small ribosomal subunit rRNA binding	5.26E-04
10	GO:0004550: nucleoside diphosphate kinase activity	7.53E-04
11	GO:0008235: metalloexopeptidase activity	2.18E-03
12	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.22E-03
13	GO:0015288: porin activity	2.52E-03
14	GO:0008308: voltage-gated anion channel activity	2.88E-03
15	GO:0001055: RNA polymerase II activity	3.65E-03
16	GO:0001054: RNA polymerase I activity	4.48E-03
17	GO:0001056: RNA polymerase III activity	4.92E-03
18	GO:0015266: protein channel activity	5.37E-03
19	GO:0003746: translation elongation factor activity	2.55E-02
20	GO:0042393: histone binding	2.80E-02
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.41E-02
22	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.78E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0022626: cytosolic ribosome	9.32E-95
3	GO:0022625: cytosolic large ribosomal subunit	3.25E-84
4	GO:0005840: ribosome	4.38E-76
5	GO:0022627: cytosolic small ribosomal subunit	1.55E-53
6	GO:0005730: nucleolus	2.04E-43
7	GO:0005829: cytosol	2.49E-34
8	GO:0009506: plasmodesma	2.00E-30
9	GO:0005737: cytoplasm	7.90E-25
10	GO:0015934: large ribosomal subunit	3.84E-24
11	GO:0005774: vacuolar membrane	3.72E-16
12	GO:0016020: membrane	8.76E-14
13	GO:0015935: small ribosomal subunit	7.16E-11
14	GO:0005773: vacuole	2.98E-10
15	GO:0005618: cell wall	3.50E-10
16	GO:0005886: plasma membrane	4.14E-08
17	GO:0009507: chloroplast	8.06E-05
18	GO:0005742: mitochondrial outer membrane translocase complex	1.20E-04
19	GO:0005951: carbamoyl-phosphate synthase complex	1.40E-04
20	GO:0030686: 90S preribosome	1.40E-04
21	GO:0034719: SMN-Sm protein complex	5.26E-04
22	GO:0005853: eukaryotic translation elongation factor 1 complex	5.26E-04
23	GO:0005682: U5 snRNP	9.98E-04
24	GO:0005687: U4 snRNP	1.26E-03
25	GO:0097526: spliceosomal tri-snRNP complex	1.26E-03
26	GO:0005689: U12-type spliceosomal complex	1.86E-03
27	GO:0071004: U2-type prespliceosome	2.52E-03
28	GO:0046930: pore complex	2.88E-03
29	GO:0005763: mitochondrial small ribosomal subunit	3.26E-03
30	GO:0005736: DNA-directed RNA polymerase I complex	3.26E-03
31	GO:0005685: U1 snRNP	3.26E-03
32	GO:0005666: DNA-directed RNA polymerase III complex	3.65E-03
33	GO:0071011: precatalytic spliceosome	3.65E-03
34	GO:0005686: U2 snRNP	4.06E-03
35	GO:0000418: DNA-directed RNA polymerase IV complex	4.06E-03
36	GO:0071013: catalytic step 2 spliceosome	4.48E-03
37	GO:0005665: DNA-directed RNA polymerase II, core complex	4.92E-03
38	GO:0019013: viral nucleocapsid	5.37E-03
39	GO:0005758: mitochondrial intermembrane space	7.32E-03
40	GO:0005622: intracellular	7.68E-03
41	GO:0005741: mitochondrial outer membrane	8.38E-03
42	GO:0030529: intracellular ribonucleoprotein complex	1.79E-02
43	GO:0005743: mitochondrial inner membrane	3.16E-02
44	GO:0005681: spliceosomal complex	4.26E-02