Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G09390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901799: negative regulation of proteasomal protein catabolic process0.00E+00
2GO:0032780: negative regulation of ATPase activity0.00E+00
3GO:0010111: glyoxysome organization0.00E+00
4GO:0006481: C-terminal protein methylation1.30E-05
5GO:0019483: beta-alanine biosynthetic process3.42E-05
6GO:0019395: fatty acid oxidation3.42E-05
7GO:0006212: uracil catabolic process3.42E-05
8GO:0080055: low-affinity nitrate transport6.16E-05
9GO:0006624: vacuolar protein processing9.36E-05
10GO:0098719: sodium ion import across plasma membrane1.68E-04
11GO:0070814: hydrogen sulfide biosynthetic process2.10E-04
12GO:0051603: proteolysis involved in cellular protein catabolic process2.55E-04
13GO:0006333: chromatin assembly or disassembly2.99E-04
14GO:0010038: response to metal ion2.99E-04
15GO:0006955: immune response2.99E-04
16GO:0043562: cellular response to nitrogen levels3.94E-04
17GO:0051453: regulation of intracellular pH4.96E-04
18GO:0000103: sulfate assimilation5.49E-04
19GO:0015706: nitrate transport6.58E-04
20GO:0071365: cellular response to auxin stimulus6.58E-04
21GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process7.14E-04
22GO:0009695: jasmonic acid biosynthetic process1.01E-03
23GO:0009723: response to ethylene1.04E-03
24GO:0031408: oxylipin biosynthetic process1.08E-03
25GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.34E-03
26GO:0006814: sodium ion transport1.56E-03
27GO:0006635: fatty acid beta-oxidation1.70E-03
28GO:0006464: cellular protein modification process1.94E-03
29GO:0071805: potassium ion transmembrane transport2.02E-03
30GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.26E-03
31GO:0042128: nitrate assimilation2.35E-03
32GO:0006950: response to stress2.43E-03
33GO:0007568: aging2.87E-03
34GO:0009611: response to wounding2.89E-03
35GO:0006508: proteolysis2.90E-03
36GO:0000209: protein polyubiquitination3.73E-03
37GO:0006511: ubiquitin-dependent protein catabolic process3.82E-03
38GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.13E-03
39GO:0006857: oligopeptide transport4.65E-03
40GO:0048367: shoot system development5.09E-03
41GO:0010150: leaf senescence8.26E-03
42GO:0009751: response to salicylic acid1.70E-02
43GO:0009753: response to jasmonic acid1.81E-02
44GO:0009908: flower development2.41E-02
45GO:0006979: response to oxidative stress4.31E-02
RankGO TermAdjusted P value
1GO:0004157: dihydropyrimidinase activity0.00E+00
2GO:0042030: ATPase inhibitor activity0.00E+00
3GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity1.30E-05
4GO:0003988: acetyl-CoA C-acyltransferase activity3.42E-05
5GO:0004197: cysteine-type endopeptidase activity5.56E-05
6GO:0004781: sulfate adenylyltransferase (ATP) activity6.16E-05
7GO:0080054: low-affinity nitrate transmembrane transporter activity6.16E-05
8GO:0030527: structural constituent of chromatin9.36E-05
9GO:0008113: peptide-methionine (S)-S-oxide reductase activity2.53E-04
10GO:0008234: cysteine-type peptidase activity2.73E-04
11GO:0015386: potassium:proton antiporter activity6.03E-04
12GO:0031624: ubiquitin conjugating enzyme binding7.72E-04
13GO:0004175: endopeptidase activity7.72E-04
14GO:0015385: sodium:proton antiporter activity1.86E-03
15GO:0015293: symporter activity3.93E-03
16GO:0005509: calcium ion binding5.24E-03
17GO:0003682: chromatin binding1.17E-02
18GO:0061630: ubiquitin protein ligase activity1.35E-02
19GO:0004871: signal transducer activity1.53E-02
20GO:0003924: GTPase activity1.72E-02
21GO:0005507: copper ion binding3.33E-02
22GO:0005525: GTP binding3.70E-02
23GO:0005215: transporter activity4.60E-02
RankGO TermAdjusted P value
1GO:0000323: lytic vacuole1.46E-07
2GO:0031972: chloroplast intermembrane space1.30E-05
3GO:0030139: endocytic vesicle6.16E-05
4GO:0032585: multivesicular body membrane9.36E-05
5GO:0009514: glyoxysome3.94E-04
6GO:0031901: early endosome membrane4.45E-04
7GO:0005768: endosome6.30E-04
8GO:0005764: lysosome7.72E-04
9GO:0005769: early endosome8.91E-04
10GO:0005773: vacuole1.05E-03
11GO:0005783: endoplasmic reticulum1.57E-03
12GO:0000785: chromatin1.78E-03
13GO:0032580: Golgi cisterna membrane1.94E-03
14GO:0000151: ubiquitin ligase complex2.61E-03
15GO:0000502: proteasome complex4.44E-03
16GO:0010008: endosome membrane5.09E-03
17GO:0012505: endomembrane system5.54E-03
18GO:0005615: extracellular space8.93E-03
19GO:0009507: chloroplast1.61E-02
20GO:0005777: peroxisome2.86E-02
21GO:0005802: trans-Golgi network3.63E-02
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Gene type



Gene DE type